ITK
4.3.0
Insight Segmentation and Registration Toolkit
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#include <itkBioGene.h>
This class implements the abstraction of a biological gene.
The gene has a name and a specification of promoter and represor binding sites. Promoters and represors encode a boolean expression that controls the expression of the gene. These boolean expressions will result in a polynome in a finite different equation determining the rate at which protein is syntethizied by this gene.
Definition at line 42 of file itkBioGene.h.
Classes | |
struct | ControlDomainType |
Public Types | |
typedef double | AffinityType |
typedef std::string | DomainType |
typedef std::vector < ControlDomainType > | GeneControlDomainsType |
typedef std::string | NameType |
typedef std::map< DomainType, AffinityType > | ProteinDomainsType |
Public Member Functions | |
void | AddGeneControlDomain (const DomainType &domain, bool type) |
void | AddProteinDomain (const DomainType &domain, AffinityType affinity) |
void | Copy (const Gene &genome) |
Gene () | |
const char * | GetName () const |
void | SetName (const NameType &name) |
void | SetName (const char *name) |
virtual | ~Gene () |
Private Attributes | |
GeneControlDomainsType | m_ControlDomains |
NameType | m_Name |
ProteinDomainsType | m_ProteinDomains |
typedef double itk::bio::Gene::AffinityType |
Definition at line 47 of file itkBioGene.h.
typedef std::string itk::bio::Gene::DomainType |
Definition at line 46 of file itkBioGene.h.
typedef std::vector< ControlDomainType > itk::bio::Gene::GeneControlDomainsType |
Definition at line 55 of file itkBioGene.h.
typedef std::string itk::bio::Gene::NameType |
Definition at line 45 of file itkBioGene.h.
typedef std::map< DomainType, AffinityType > itk::bio::Gene::ProteinDomainsType |
Definition at line 48 of file itkBioGene.h.
itk::bio::Gene::Gene | ( | ) |
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virtual |
void itk::bio::Gene::AddGeneControlDomain | ( | const DomainType & | domain, |
bool | type | ||
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Add a control domain to the gene. A control domain is an enhancer or silencer. A gene can have any number of them. The type will indicate if they are enhancers or silencers.
void itk::bio::Gene::AddProteinDomain | ( | const DomainType & | domain, |
AffinityType | affinity | ||
) |
Add a protein domain along with an affinity. The name of the domain here actually refers to the one for which this protein will have binding affinity. For example, adding "SH2" with affinity 0.05 will mean that this gene will synthetize a proteing with a domain that has 0.05 affinity for a standard SH2 domain.
void itk::bio::Gene::Copy | ( | const Gene & | genome | ) |
const char* itk::bio::Gene::GetName | ( | ) | const |
void itk::bio::Gene::SetName | ( | const NameType & | name | ) |
Set/Get the name of the gene. This uses a std::string type.
void itk::bio::Gene::SetName | ( | const char * | name | ) |
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private |
Definition at line 84 of file itkBioGene.h.
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private |
Definition at line 83 of file itkBioGene.h.
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private |
Definition at line 85 of file itkBioGene.h.