#include <itkLabeledPointSetToPointSetMetricv4.h>

Inheritance diagram for itk::LabeledPointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >:

Collaboration diagram for itk::LabeledPointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >:

Detailed Description

template<class TFixedPointSet, class TMovingPointSet = TFixedPointSet>
class itk::LabeledPointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >

Computes the distance metric and gradient between two labeled point sets.

This class is generic in that it takes an unlabeled point set metric, such as one of the following options

where it is assumed that the point set PixelType associated with each point is a label (i.e. LabelType). This class is used to find the total metric and total derivative based on the matching between the separate fixed and moving labeled point sets. This class first determines the common label set between the fixed and moving point sets. For each common label, the specified unlabeled point set metric is cloned and the fixed and moving point subset associated with that common label is specified as the fixed and moving point set input. Functionality in the base class (PointSetToPointSetMetric) is used to accumulated the value and gradient.

Author: Nick Tustison

Definition at line 53 of file itkLabeledPointSetToPointSetMetricv4.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DerivativeType	DerivativeType

typedef FixedPointSetType::Pointer	FixedPointSetPointer

typedef TFixedPointSet	FixedPointSetType

typedef std::vector< LabelType >	LabelSetType

typedef Superclass::PixelType	LabelType

typedef Superclass::LocalDerivativeType	LocalDerivativeType

typedef Superclass::MeasureType	MeasureType

typedef MovingPointSetType::Pointer	MovingPointSetPointer

typedef TMovingPointSet	MovingPointSetType

typedef SmartPointer< Self >	Pointer

typedef Superclass::PointIdentifier	PointIdentifier

typedef PointSetMetricType::Pointer	PointSetMetricPointer

typedef Superclass	PointSetMetricType

typedef Superclass::PointType	PointType

typedef LabeledPointSetToPointSetMetricv4	Self

typedef PointSetToPointSetMetricv4 < TFixedPointSet, TMovingPointSet >	Superclass

Public Types inherited from itk::PointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >
typedef SmartPointer< const Self >	ConstPointer

typedef PointType::CoordRepType	CoordRepType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeType::ValueType	DerivativeValueType

typedef Superclass::DimensionType	DimensionType

typedef Superclass::MovingDisplacementFieldTransformType	DisplacementFieldTransformType

typedef Superclass::FixedInputPointType	FixedInputPointType

typedef Superclass::FixedOutputPointType	FixedOutputPointType

typedef TFixedPointSet::PixelType	FixedPixelType

typedef TFixedPointSet::PointsContainer	FixedPointsContainer

typedef TFixedPointSet	FixedPointSetType

typedef TFixedPointSet::PointType	FixedPointType

typedef PointSet < FixedPixelType, itkGetStaticConstMacro(PointDimension)>	FixedTransformedPointSetType

typedef Superclass::FixedTransformJacobianType	FixedTransformJacobianType

typedef Superclass::FixedTransformParametersType	FixedTransformParametersType

typedef Superclass::FixedTransformPointer	FixedTransformPointer

typedef Superclass::FixedTransformType	FixedTransformType

typedef Superclass::JacobianType	JacobianType

typedef FixedArray < DerivativeValueType, itkGetStaticConstMacro(PointDimension)>	LocalDerivativeType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingInputPointType	MovingInputPointType

typedef Superclass::MovingOutputPointType	MovingOutputPointType

typedef TMovingPointSet::PixelType	MovingPixelType

typedef TMovingPointSet::PointsContainer	MovingPointsContainer

typedef TMovingPointSet	MovingPointSetType

typedef TMovingPointSet::PointType	MovingPointType

typedef PointSet < MovingPixelType, itkGetStaticConstMacro(PointDimension)>	MovingTransformedPointSetType

typedef Superclass::MovingTransformJacobianType	MovingTransformJacobianType

typedef Superclass::MovingTransformParametersType	MovingTransformParametersType

typedef Superclass::MovingTransformPointer	MovingTransformPointer

typedef Superclass::MovingTransformType	MovingTransformType

typedef PointsLocatorType::NeighborsIdentifierType	NeighborsIdentifierType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef FixedPixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef PointsContainer::ElementIdentifier	PointIdentifier

typedef PointsContainer::ConstIterator	PointsConstIterator

typedef FixedPointsContainer	PointsContainer

typedef PointsLocator < PointsContainer >	PointsLocatorType

typedef FixedPointType	PointType

typedef PointSetToPointSetMetricv4	Self

typedef ObjectToObjectMetric < TFixedPointSet::PointDimension, TMovingPointSet::PointDimension >	Superclass

typedef Superclass::VirtualDirectionType	VirtualDirectionType

typedef Superclass::VirtualImagePointer	VirtualImagePointer

typedef Superclass::VirtualImageType	VirtualImageType

typedef Superclass::VirtualIndexType	VirtualIndexType

typedef Superclass::VirtualPointType	VirtualOriginType

typedef Superclass::VirtualPixelType	VirtualPixelType

typedef Superclass::VirtualPointSetPointer	VirtualPointSetPointer

typedef Superclass::VirtualPointSetType	VirtualPointSetType

typedef Superclass::VirtualPointType	VirtualPointType

typedef Superclass::VirtualSizeType	VirtualRadiusType

typedef Superclass::VirtualRegionType	VirtualRegionType

typedef Superclass::VirtualSizeType	VirtualSizeType

typedef Superclass::VirtualSpacingType	VirtualSpacingType

Public Types inherited from itk::ObjectToObjectMetric< TFixedPointSet::PointDimension, TMovingPointSet::PointDimension >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::ParametersValueType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::DerivativeValueType	DerivativeValueType

typedef SizeValueType	DimensionType

typedef FixedTransformType::InputPointType	FixedInputPointType

typedef FixedTransformType::OutputPointType	FixedOutputPointType

typedef FixedTransformType::JacobianType	FixedTransformJacobianType

typedef FixedTransformType::ParametersType	FixedTransformParametersType

typedef FixedTransformType::Pointer	FixedTransformPointer

typedef Transform < ParametersValueType, Image < typename ObjectToObjectMetricBase::ParametersValueType, TFixedDimension > ::ImageDimension, TFixedDimension >	FixedTransformType

typedef Superclass::InternalComputationValueType	InternalComputationValueType

typedef FixedTransformType::JacobianType	JacobianType

typedef Superclass::MeasureType	MeasureType

typedef DisplacementFieldTransform < CoordinateRepresentationType, itkGetStaticConstMacro(MovingDimension) >	MovingDisplacementFieldTransformType

typedef MovingTransformType::InputPointType	MovingInputPointType

typedef MovingTransformType::OutputPointType	MovingOutputPointType

typedef MovingTransformType::JacobianType	MovingTransformJacobianType

typedef MovingTransformType::ParametersType	MovingTransformParametersType

typedef MovingTransformType::Pointer	MovingTransformPointer

typedef Transform < ParametersValueType, Image < typename ObjectToObjectMetricBase::ParametersValueType, TFixedDimension > ::ImageDimension, TMovingDimension >	MovingTransformType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef ObjectToObjectMetric	Self

typedef ObjectToObjectMetricBase	Superclass

typedef VirtualImageType::DirectionType	VirtualDirectionType

typedef VirtualImageType::ConstPointer	VirtualImageConstPointer

typedef VirtualImageType::Pointer	VirtualImagePointer

typedef Image< typename ObjectToObjectMetricBase::ParametersValueType, TFixedDimension >	VirtualImageType

typedef VirtualImageType::IndexType	VirtualIndexType

typedef VirtualImageType::PointType	VirtualOriginType

typedef VirtualImageType::PixelType	VirtualPixelType

typedef VirtualPointSetType::Pointer	VirtualPointSetPointer

typedef PointSet < VirtualPixelType, itkGetStaticConstMacro(VirtualDimension)>	VirtualPointSetType

typedef VirtualImageType::PointType	VirtualPointType

typedef VirtualImageType::SizeType	VirtualRadiusType

typedef VirtualImageType::RegionType	VirtualRegionType

typedef VirtualRegionType::SizeType	VirtualSizeType

typedef VirtualImageType::SpacingType	VirtualSpacingType

Public Types inherited from itk::ObjectToObjectMetricBase
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::ParametersValueType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef DerivativeType::ValueType	DerivativeValueType

enum	GradientSourceType { GRADIENT_SOURCE_FIXED =0, GRADIENT_SOURCE_MOVING, GRADIENT_SOURCE_BOTH }

typedef double	InternalComputationValueType

typedef Superclass::MeasureType	MeasureType

typedef unsigned int	NumberOfParametersType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef ObjectToObjectMetricBase	Self

typedef SingleValuedCostFunctionv4	Superclass

Public Types inherited from itk::SingleValuedCostFunctionv4
typedef SmartPointer< const Self >	ConstPointer

typedef Array < ParametersValueType >	DerivativeType

typedef double	MeasureType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef SingleValuedCostFunctionv4	Self

typedef CostFunction	Superclass

Public Types inherited from itk::CostFunction
typedef SmartPointer< const Self >	ConstPointer

typedef OptimizerParameters < ParametersValueType >	ParametersType

typedef double	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef CostFunction	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual MeasureType	GetLocalNeighborhoodValue (const PointType &, const LabelType &) const

virtual void	GetLocalNeighborhoodValueAndDerivative (const PointType &, MeasureType &, LocalDerivativeType &, const LabelType &) const

virtual const char *	GetNameOfClass () const

virtual void	Initialize (void) throw ( ExceptionObject )

	typedef (Concept::IsInteger< LabelType >) LabelTypeIsInteger


virtual void	SetPointSetMetric (PointSetMetricType *_arg)

virtual PointSetMetricType *	GetModifiablePointSetMetric ()

virtual const PointSetMetricType *	GetPointSetMetric () const

Public Member Functions inherited from itk::PointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >
virtual void	GetDerivative (DerivativeType &) const

virtual const FixedTransformedPointSetType *	GetFixedTransformedPointSet () const

virtual LocalDerivativeType	GetLocalNeighborhoodDerivative (const PointType &, const PixelType &pixel=0) const

virtual MeasureType	GetLocalNeighborhoodValue (const PointType &, const PixelType &pixel=0) const =0

virtual void	GetLocalNeighborhoodValueAndDerivative (const PointType &, MeasureType &, LocalDerivativeType &, const PixelType &pixel=0) const =0

virtual FixedTransformedPointSetType *	GetModifiableFixedTransformedPointSet ()

virtual MovingTransformedPointSetType *	GetModifiableMovingTransformedPointSet ()

virtual const MovingTransformedPointSetType *	GetMovingTransformedPointSet () const

SizeValueType	GetNumberOfComponents () const

virtual MeasureType	GetValue () const

virtual void	GetValueAndDerivative (MeasureType &, DerivativeType &) const

const VirtualPointSetType *	GetVirtualTransformedPointSet (void) const

virtual void	SetMovingPointSet (const MovingPointSetType *_arg)

virtual bool	SupportsArbitraryVirtualDomainSamples (void) const

virtual void	SetFixedPointSet (const FixedPointSetType *_arg)

virtual const FixedPointSetType *	GetFixedPointSet () const

Public Member Functions inherited from itk::ObjectToObjectMetric< TFixedPointSet::PointDimension, TMovingPointSet::PointDimension >
OffsetValueType	ComputeParameterOffsetFromVirtualIndex (const VirtualIndexType &index, const NumberOfParametersType &numberOfLocalParameters) const

OffsetValueType	ComputeParameterOffsetFromVirtualPoint (const VirtualPointType &point, const NumberOfParametersType &numberOfLocalParameters) const

virtual const FixedTransformType *	GetFixedTransform () const

virtual FixedTransformType *	GetModifiableFixedTransform ()

virtual MovingTransformType *	GetModifiableMovingTransform ()

virtual VirtualImageType *	GetModifiableVirtualImage ()

virtual const MovingTransformType *	GetMovingTransform () const

virtual NumberOfParametersType	GetNumberOfLocalParameters () const

virtual NumberOfParametersType	GetNumberOfParameters () const

virtual SizeValueType	GetNumberOfValidPoints () const

virtual const ParametersType &	GetParameters () const

const MovingTransformType *	GetTransform ()

VirtualDirectionType	GetVirtualDirection (void) const

virtual const TimeStamp &	GetVirtualDomainTimeStamp (void) const

virtual const VirtualImageType *	GetVirtualImage () const

VirtualOriginType	GetVirtualOrigin (void) const

const VirtualRegionType &	GetVirtualRegion (void) const

VirtualSpacingType	GetVirtualSpacing (void) const

virtual bool	HasLocalSupport () const

virtual void	SetFixedTransform (FixedTransformType *_arg)

virtual void	SetMovingTransform (MovingTransformType *_arg)

virtual void	SetParameters (ParametersType &params)

void	SetTransform (MovingTransformType *transform)

void	SetVirtualDomain (const VirtualSpacingType &spacing, const VirtualOriginType &origin, const VirtualDirectionType &direction, const VirtualRegionType &region)

virtual void	UpdateTransformParameters (const DerivativeType &derivative, ParametersValueType factor)

void	SetVirtualDomainFromImage (VirtualImageType *virtualImage)

void	SetVirtualDomainFromImage (const VirtualImageType *virtualImage)

bool	IsInsideVirtualDomain (const VirtualPointType &point) const

bool	IsInsideVirtualDomain (const VirtualIndexType &index) const

Public Member Functions inherited from itk::ObjectToObjectMetricBase
MeasureType	GetCurrentValue () const

virtual GradientSourceType	GetGradientSource () const

bool	GetGradientSourceIncludesFixed () const

bool	GetGradientSourceIncludesMoving () const

virtual void	GetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const =0

virtual void	SetGradientSource (GradientSourceType _arg)

Public Member Functions inherited from itk::SingleValuedCostFunctionv4
virtual void	GetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const =0

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	LabeledPointSetToPointSetMetricv4 ()

void	PrintSelf (std::ostream &os, Indent indent) const

virtual	~LabeledPointSetToPointSetMetricv4 ()

Protected Member Functions inherited from itk::PointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >
virtual SizeValueType	CalculateNumberOfValidFixedPoints (void) const

void	CalculateValueAndDerivative (MeasureType &value, DerivativeType &derivative, bool calculateValue) const

virtual void	InitializeForIteration (void) const

virtual void	InitializePointSets (void) const

void	InitializePointsLocators () const

	PointSetToPointSetMetricv4 ()

void	PrintSelf (std::ostream &os, Indent indent) const

void	StorePointDerivative (const VirtualPointType &, const DerivativeType &, DerivativeType &) const

void	TransformFixedAndCreateVirtualPointSet () const

void	TransformMovingPointSet () const

virtual	~PointSetToPointSetMetricv4 ()

Protected Member Functions inherited from itk::ObjectToObjectMetric< TFixedPointSet::PointDimension, TMovingPointSet::PointDimension >
MovingDisplacementFieldTransformType *	GetMovingDisplacementFieldTransform () const

	ObjectToObjectMetric ()

void	PrintSelf (std::ostream &os, Indent indent) const

bool	TransformPhysicalPointToVirtualIndex (const VirtualPointType &, VirtualIndexType &) const

void	TransformVirtualIndexToPhysicalPoint (const VirtualIndexType &, VirtualPointType &) const

virtual void	VerifyDisplacementFieldSizeAndPhysicalSpace ()

bool	VerifyNumberOfValidPoints (MeasureType &value, DerivativeType &derivative) const

virtual	~ObjectToObjectMetric ()

Protected Member Functions inherited from itk::ObjectToObjectMetricBase
	ObjectToObjectMetricBase ()

virtual	~ObjectToObjectMetricBase ()

Protected Member Functions inherited from itk::SingleValuedCostFunctionv4
	SingleValuedCostFunctionv4 ()

virtual	~SingleValuedCostFunctionv4 ()

Protected Member Functions inherited from itk::CostFunction
	CostFunction ()

virtual	~CostFunction ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Member Functions
void	DetermineCommonPointSetLabels ()

FixedPointSetPointer	GetLabeledFixedPointSet (const LabelType) const

MovingPointSetPointer	GetLabeledMovingPointSet (const LabelType) const

	LabeledPointSetToPointSetMetricv4 (const Self &)

void	operator= (const Self &)

Private Attributes
LabelSetType	m_CommonPointSetLabels

LabelSetType	m_FixedPointSetLabels

LabelSetType	m_MovingPointSetLabels

PointSetMetricPointer	m_PointSetMetric

std::vector < PointSetMetricPointer >	m_PointSetMetricClones

Additional Inherited Members
Static Public Attributes inherited from itk::PointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >
static const DimensionType	FixedPointDimension = Superclass::FixedDimension

static const DimensionType	MovingPointDimension = Superclass::MovingDimension

static const DimensionType	PointDimension = Superclass::FixedDimension

Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType

Protected Attributes inherited from itk::PointSetToPointSetMetricv4< TFixedPointSet, TMovingPointSet >
FixedPointSetType::ConstPointer	m_FixedPointSet

FixedTransformedPointSetType::Pointer	m_FixedTransformedPointSet

PointsLocatorType::Pointer	m_FixedTransformedPointsLocator

MovingPointSetType::ConstPointer	m_MovingPointSet

MovingTransformedPointSetType::Pointer	m_MovingTransformedPointSet

PointsLocatorType::Pointer	m_MovingTransformedPointsLocator

bool	m_UsePointSetData

VirtualPointSetPointer	m_VirtualTransformedPointSet