#include <itkSegmentationLevelSetImageFilter.h>

Inheritance diagram for itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >:

Collaboration diagram for itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >:

Detailed Description

template<typename TInputImage, typename TFeatureImage, typename TOutputPixelType = float>
class itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >

A base class which defines the API for implementing a special class of image segmentation filters using level set methods.

OVERVIEW: This object defines the framework for a class of segmentation filters which use level set methods. These filters work by constructing a ``feature image'' onto which the evolving level set locks as it moves. In the feature image, values that are close to zero are associated with object boundaries. An original (or preprocessed) image is given to the filter as the feature image and a seed for the level set is given as the input of the filter. The seed is converted into a level set embedding which propagates according to the features calculated from the original image.

TEMPLATE PARAMETERS: There are two required and one optional template parameter for these filters.

TInputImage is the image type of the initial model you will input to the filter using SetInput() or SetInitialImage().

TFeatureImage is the image type of the image from which the filter will calculate the speed term for segmentation (see INPUTS).

TOutputPixelType is the data type used for the output image phi, the implicit level set image. This should really only ever be set as float (default) or double.

INPUTS: The input to any subclass of this filter is the seed image for the initial level set embedding. As with other subclasses of the SparseLevelSetImageFilter, the type of the input image is is not important. The (RequestedRegion) size of the seed image must, however, match the (RequestedRegion) size of the feature image.

You must identify the initial front (surface) in the input image. You do this by specifying its isovalue through the method SetIsoSurfaceValue(float f). The algorithm will then initialize its solution using the front represented by value f. Note that the front is always represented by isosurface zero in the output and not the isosurface you specified for the input. This is because, for simplicity, the filter will shift your input image so that the active front has zero values.

: Depending on the particular application and filter that you are using, the feature image should be preprocessed with some type of noise reduction filtering. The feature image input can be of any type, but it will be cast to floating point before calculations are done.

OUTPUTS: The output of any subclass of this filter is a level set embedding as described in SparseFieldLevelSetImageFilter. The zero crossings of the output image give the pixels closest to the level set boundary. By ITK convention, NEGATIVE values are pixels INSIDE the segmented region and POSITIVE values are pixels OUTSIDE the segmented region.

PARAMETERS: The MaximumRMSChange parameter is used to determine when the solution has converged. A lower value will result in a tighter-fitting solution, but will require more computations. Too low a value could put the solver into an infinite loop unless a reasonable NumberOfIterations parameter is set. Values should always be greater than 0.0 and less than 1.0.

: The NumberOfIterations parameter can be used to halt the solution after a specified number of iterations, overriding the MaximumRMSChange halting criteria.

: The standard convention for ITK level-set segmentation filters is that POSITIVE propagation (speed) and advection terms cause the surface to EXPAND while negative terms cause the surface to CONTRACT. When the ReverseExpansionDirection parameter is set to TRUE (on), it tells the function object to reverse the standard ITK convention so that NEGATIVE terms cause EXPANSION and positive terms cause CONTRACTION.

This parameter can be safely changed as appropriate for a particular application or data set to achieve the desired behavior.

: The FeatureScaling parameter controls the magnitude of the features calculated for use in the level set propagation and advection speeds. This value simply sets both parameters to equal values at once. Some filters may only use on of these two terms and this method is a generic way to set either or both without having to know which is in use.

: The CurvatureScaling parameter controls the magnitude of the curvature values which are calculated on the evolving isophote. This is important in controlling the relative effect of curvature in the calculation. Default value is 1.0. Higher values relative to the other level set equation terms (propagation and advection) will give a smoother result.

: The PropagationScaling parameter controls the scaling of the scalar propagation (speed) term relative to other terms in the level set equation. Setting this value will override any value already set by FeatureScaling.

: The AdvectionScaling parameter controls the scaling of the vector advection field term relative to other terms in the level set equation. Setting this value will override any value already set by FeatureScaling.

Warning: This is an abstract class. It is not intended to be instantiated by itself. Instead, you should use the derived classes. This is the reason why the New() operator (itkNewMacro) is missing from the class API.

: See LevelSetFunction for more information.

Definition at line 145 of file itkSegmentationLevelSetImageFilter.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef TFeatureImage	FeatureImageType

typedef Superclass::IndexType	IndexType

typedef Superclass::InputImageType	InputImageType

typedef Image < TOutputPixelType, itkGetStaticConstMacro(InputImageDimension) >	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef SegmentationLevelSetFunction < OutputImageType, FeatureImageType >	SegmentationFunctionType

typedef SegmentationLevelSetImageFilter	Self

typedef SegmentationFunctionType::ImageType	SpeedImageType

typedef SparseFieldLevelSetImageFilter < TInputImage, OutputImageType >	Superclass

typedef Superclass::TimeStepType	TimeStepType

typedef Superclass::ValueType	ValueType

typedef SegmentationFunctionType::VectorImageType	VectorImageType

Public Types inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef OutputImageType::IndexType	IndexType

typedef TInputImage	InputImageType

typedef std::vector < LayerPointerType >	LayerListType

typedef ObjectStore < LayerNodeType >	LayerNodeStorageType

typedef SparseFieldLevelSetNode < IndexType >	LayerNodeType

typedef LayerType::Pointer	LayerPointerType

typedef SparseFieldLayer < LayerNodeType >	LayerType

typedef Superclass::NeighborhoodScalesType	NeighborhoodScalesType

typedef Image < TOutputPixelType, TInputImage::ImageDimension >	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RadiusType	RadiusType

typedef SparseFieldLevelSetImageFilter	Self

typedef Image< StatusType, itkGetStaticConstMacro(ImageDimension) >	StatusImageType

typedef signed char	StatusType

typedef FiniteDifferenceImageFilter < TInputImage, Image < TOutputPixelType, TInputImage::ImageDimension > >	Superclass

typedef Superclass::TimeStepType	TimeStepType

typedef std::vector< ValueType >	UpdateBufferType

typedef OutputImageType::ValueType	ValueType

Public Types inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef FiniteDifferenceFunction < Image< TOutputPixelType, TInputImage::ImageDimension > >	FiniteDifferenceFunctionType

typedef TInputImage	InputImageType

typedef TInputImage::PixelType	InputPixelType

typedef NumericTraits < InputPixelType >::ValueType	InputPixelValueType

typedef FiniteDifferenceFunctionType::NeighborhoodScalesType	NeighborhoodScalesType

typedef Image < TOutputPixelType, TInputImage::ImageDimension >	OutputImageType

typedef Image < TOutputPixelType, TInputImage::ImageDimension > ::PixelType	OutputPixelType

typedef NumericTraits < OutputPixelType >::ValueType	OutputPixelValueType

typedef OutputPixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef FiniteDifferenceFunctionType::RadiusType	RadiusType

typedef FiniteDifferenceImageFilter	Self

typedef InPlaceImageFilter < TInputImage, Image < TOutputPixelType, TInputImage::ImageDimension > >	Superclass

typedef FiniteDifferenceFunctionType::TimeStepType	TimeStepType

Public Types inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef TInputImage	InputImageType

typedef Superclass::OutputImagePixelType	OutputImagePixelType

typedef Superclass::OutputImagePointer	OutputImagePointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef Superclass::OutputImageType	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef InPlaceImageFilter	Self

typedef ImageToImageFilter < TInputImage, Image < TOutputPixelType, TInputImage::ImageDimension > >	Superclass

Public Types inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef TInputImage	InputImageType

typedef Superclass::OutputImagePixelType	OutputImagePixelType

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef SmartPointer< Self >	Pointer

typedef ImageToImageFilter	Self

typedef ImageSource< Image < TOutputPixelType, TInputImage::ImageDimension > >	Superclass

Public Types inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType

typedef OutputImageType::PixelType	OutputImagePixelType

typedef OutputImageType::Pointer	OutputImagePointer

typedef OutputImageType::RegionType	OutputImageRegionType

typedef Image < TOutputPixelType, TInputImage::ImageDimension >	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef ImageSource	Self

typedef ProcessObject	Superclass

Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer

typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef std::vector < DataObjectPointer >	DataObjectPointerArray

typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType

typedef std::vector < DataObjectIdentifierType >	NameArray

typedef SmartPointer< Self >	Pointer

typedef ProcessObject	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
void	GenerateAdvectionImage ()

void	GenerateSpeedImage ()

virtual const VectorImageType *	GetAdvectionImage () const

ValueType	GetAdvectionScaling () const

ValueType	GetCurvatureScaling () const

virtual FeatureImageType *	GetFeatureImage ()

double	GetMaximumCurvatureTimeStep () const

unsigned int	GetMaximumIterations ()

double	GetMaximumPropagationTimeStep () const

virtual const char *	GetNameOfClass () const

ValueType	GetPropagationScaling () const

virtual SegmentationFunctionType *	GetSegmentationFunction ()

virtual const SpeedImageType *	GetSpeedImage () const

bool	GetUseMinimalCurvature () const

bool	GetUseNegativeFeatures () const

void	SetAdvectionImage (VectorImageType *v)

virtual void	SetInitialImage (InputImageType *f)

void	SetInput2 (const FeatureImageType *input)

virtual void	SetSegmentationFunction (SegmentationFunctionType *s)

void	SetSpeedImage (SpeedImageType *s)

void	SetUseNegativeFeaturesOff ()

	typedef (Concept::HasNumericTraits< TOutputPixelType >) OutputHasNumericTraitsCheck

void	UseMinimalCurvatureOff ()

void	UseMinimalCurvatureOn ()


void	SetMaximumIterations (unsigned int i)


virtual void	SetFeatureImage (const FeatureImageType *f)


void	SetUseNegativeFeaturesOn ()


void	SetUseNegativeFeatures (bool u)


virtual void	SetReverseExpansionDirection (bool _arg)

virtual bool	GetReverseExpansionDirection () const

virtual void	ReverseExpansionDirectionOn ()

virtual void	ReverseExpansionDirectionOff ()


virtual void	SetAutoGenerateSpeedAdvection (bool _arg)

virtual bool	GetAutoGenerateSpeedAdvection () const

virtual void	AutoGenerateSpeedAdvectionOn ()

virtual void	AutoGenerateSpeedAdvectionOff ()


void	SetFeatureScaling (ValueType v)


void	SetPropagationScaling (ValueType v)


void	SetAdvectionScaling (ValueType v)


void	SetCurvatureScaling (ValueType v)


void	SetUseMinimalCurvature (bool b)


void	SetMaximumCurvatureTimeStep (double n)


void	SetMaximumPropagationTimeStep (double n)

Public Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

	typedef (Concept::EqualityComparable< typename Image< TOutputPixelType, TInputImage::ImageDimension >::PixelType >) OutputEqualityComparableCheck

	typedef (Concept::Convertible< double, typename Image< TOutputPixelType, TInputImage::ImageDimension >::PixelType >) DoubleConvertibleToOutputCheck

	typedef (Concept::OStreamWritable< typename Image< TOutputPixelType, TInputImage::ImageDimension >::PixelType >) OutputOStreamWritableCheck

virtual void	SetNumberOfLayers (unsigned int _arg)

virtual unsigned int	GetNumberOfLayers () const

virtual void	SetIsoSurfaceValue (ValueType _arg)

virtual ValueType	GetIsoSurfaceValue () const

virtual void	SetInterpolateSurfaceLocation (bool _arg)

virtual bool	GetInterpolateSurfaceLocation () const

void	InterpolateSurfaceLocationOn ()

void	InterpolateSurfaceLocationOff ()

Public Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual const FiniteDifferenceFunctionType::Pointer &	GetDifferenceFunction () const

virtual const IdentifierType &	GetElapsedIterations () const

virtual bool	GetIsInitialized ()

virtual void	SetDifferenceFunction (FiniteDifferenceFunctionType *_arg)

virtual void	SetIsInitialized (bool _arg)

void	SetStateToInitialized ()

void	SetStateToUninitialized ()

virtual void	SetNumberOfIterations (IdentifierType _arg)

virtual const IdentifierType &	GetNumberOfIterations () const

virtual void	SetUseImageSpacing (bool _arg)

virtual void	UseImageSpacingOn ()

virtual void	UseImageSpacingOff ()

virtual const bool &	GetUseImageSpacing () const

virtual void	SetMaximumRMSError (double _arg)

virtual const double &	GetMaximumRMSError () const

virtual void	SetRMSChange (double _arg)

virtual const double &	GetRMSChange () const

virtual void	SetManualReinitialization (bool _arg)

virtual const bool &	GetManualReinitialization () const

virtual void	ManualReinitializationOn ()

virtual void	ManualReinitializationOff ()

Public Member Functions inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual bool	CanRunInPlace () const

virtual void	SetInPlace (bool _arg)

virtual bool	GetInPlace () const

virtual void	InPlaceOn ()

virtual void	InPlaceOff ()

Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
const InputImageType *	GetInput (void) const

const InputImageType *	GetInput (unsigned int idx) const

virtual void	PopBackInput ()

virtual void	PopFrontInput ()

virtual void	PushBackInput (const InputImageType *image)

virtual void	PushFrontInput (const InputImageType *image)

virtual void	SetInput (const InputImageType *image)

virtual void	SetInput (unsigned int, const TInputImage *image)

virtual void	SetCoordinateTolerance (double _arg)

virtual double	GetCoordinateTolerance () const

virtual void	SetDirectionTolerance (double _arg)

virtual double	GetDirectionTolerance () const

Public Member Functions inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
OutputImageType *	GetOutput (unsigned int idx)

virtual void	GraftNthOutput (unsigned int idx, DataObject *output)

virtual void	GraftOutput (DataObject *output)

virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)

OutputImageType *	GetOutput (void)

const OutputImageType *	GetOutput (void) const

virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) ITK_OVERRIDE

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual void	EnlargeOutputRequestedRegion (DataObject *)

virtual const bool &	GetAbortGenerateData () const

NameArray	GetInputNames () const

MultiThreader *	GetMultiThreader () const

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

virtual const float &	GetProgress () const

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float progress)

DataObjectPointerArray	GetInputs ()

DataObjectPointerArray	GetOutputs ()

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

void	SetProgress (float progress)

virtual void	SetReleaseDataFlag (bool flag)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag () const

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	SetNumberOfThreads (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfThreads () const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const ITK_OVERRIDE

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) ITK_OVERRIDE

virtual void	UnRegister () const ITK_OVERRIDE

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Protected Member Functions
void	GenerateData ()

virtual void	PrintSelf (std::ostream &os, Indent indent) const

	SegmentationLevelSetImageFilter ()

virtual	~SegmentationLevelSetImageFilter ()


virtual void	InitializeIteration ()

Protected Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
void	AllocateUpdateBuffer ()

void	ApplyUpdate (const TimeStepType &dt)

TimeStepType	CalculateChange ()

virtual ValueType	CalculateUpdateValue (const IndexType &, const TimeStepType &dt, const ValueType &value, const ValueType &change)

void	ConstructActiveLayer ()

void	ConstructLayer (StatusType from, StatusType to)

void	CopyInputToOutput ()

virtual ValueType	GetValueOne () const

virtual ValueType	GetValueZero () const

void	Initialize ()

void	InitializeActiveLayerValues ()

virtual void	InitializeBackgroundPixels ()

virtual void	PostProcessOutput ()

void	ProcessOutsideList (LayerType *OutsideList, StatusType ChangeToStatus)

void	ProcessStatusList (LayerType InputList, LayerType OutputList, StatusType ChangeToStatus, StatusType SearchForStatus)

void	PropagateAllLayerValues ()

void	PropagateLayerValues (StatusType from, StatusType to, StatusType promote, int InOrOut)

	SparseFieldLevelSetImageFilter ()

void	UpdateActiveLayerValues (TimeStepType dt, LayerType StatusUpList, LayerType StatusDownList)

	~SparseFieldLevelSetImageFilter ()

Protected Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
	FiniteDifferenceImageFilter ()

virtual void	GenerateInputRequestedRegion ()

virtual bool	Halt ()

virtual TimeStepType	ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const

virtual void	SetElapsedIterations (IdentifierType _arg)

virtual bool	ThreadedHalt (void *)

virtual	~FiniteDifferenceImageFilter ()

Protected Member Functions inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual void	AllocateOutputs ()

virtual bool	GetRunningInPlace () const

	InPlaceImageFilter ()

virtual void	ReleaseInputs ()

	~InPlaceImageFilter ()

Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)

virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)

	ImageToImageFilter ()

virtual void	VerifyInputInformation ()

	~ImageToImageFilter ()

void	PushBackInput (const DataObject *input)

void	PushFrontInput (const DataObject *input)

Protected Member Functions inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual void	AfterThreadedGenerateData ()

virtual void	BeforeThreadedGenerateData ()

virtual const ImageRegionSplitterBase *	GetImageRegionSplitter (void) const

	ImageSource ()

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)

virtual	~ImageSource ()

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

virtual void	AddOutput (DataObject *output)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateOutputInformation ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))

	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))

	itkLegacyMacro (virtual void RemoveInput(DataObject *input))

	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)

virtual void	SetPrimaryInput (DataObject *input)

virtual void	SetPrimaryOutput (DataObject *output)

virtual void	VerifyPreconditions ()

	~ProcessObject ()

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName (void) const

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

void	SetRequiredInputNames (const NameArray &)

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName (void) const

DataObject *	GetOutput (DataObjectPointerArraySizeType idx)

const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
bool	m_AutoGenerateSpeedAdvection

bool	m_ReverseExpansionDirection

Protected Attributes inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
double	m_ConstantGradientValue

const InputImageType *	m_InputImage

bool	m_InterpolateSurfaceLocation

ValueType	m_IsoSurfaceValue

LayerNodeStorageType::Pointer	m_LayerNodeStore

LayerListType	m_Layers

SparseFieldCityBlockNeighborList < NeighborhoodIterator < OutputImageType > >	m_NeighborList

unsigned int	m_NumberOfLayers

OutputImageType *	m_OutputImage

OutputImageType::Pointer	m_ShiftedImage

StatusImageType::Pointer	m_StatusImage

UpdateBufferType	m_UpdateBuffer

Protected Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
IdentifierType	m_ElapsedIterations

bool	m_IsInitialized

bool	m_ManualReinitialization

double	m_MaximumRMSError

IdentifierType	m_NumberOfIterations

double	m_RMSChange

Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime

bool	m_Updating

Protected Attributes inherited from itk::LightObject
InternalReferenceCountType	m_ReferenceCount

SimpleFastMutexLock	m_ReferenceCountLock

Private Member Functions
void	operator= (const Self &)

	SegmentationLevelSetImageFilter (const Self &)

Private Attributes
SegmentationFunctionType *	m_SegmentationFunction

Additional Inherited Members
Static Public Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static const unsigned int	ImageDimension

Static Public Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static const unsigned int	ImageDimension

Static Public Attributes inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static const unsigned int	InputImageDimension

static const unsigned int	OutputImageDimension

Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static const unsigned int	InputImageDimension

static const unsigned int	OutputImageDimension

Static Public Attributes inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
static const unsigned int	OutputImageDimension

Protected Types inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType

typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType

Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType

Static Protected Member Functions inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()

static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)

Static Protected Attributes inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static StatusType	m_StatusActiveChangingDown

static StatusType	m_StatusActiveChangingUp

static StatusType	m_StatusBoundaryPixel

static StatusType	m_StatusChanging

static StatusType	m_StatusNull

static ValueType	m_ValueOne

static ValueType	m_ValueZero

Member Typedef Documentation

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef SmartPointer< const Self > itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ConstPointer

Definition at line 162 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef TFeatureImage itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::FeatureImageType

Local image typedefs

Definition at line 171 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef Superclass::IndexType itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::IndexType

Definition at line 166 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef Superclass::InputImageType itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::InputImageType

Definition at line 168 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef Image< TOutputPixelType, itkGetStaticConstMacro(InputImageDimension) > itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OutputImageType

Output image type typedefs

Definition at line 157 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef SmartPointer< Self > itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Pointer

Definition at line 161 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef SegmentationLevelSetFunction< OutputImageType, FeatureImageType > itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SegmentationFunctionType

The generic level set function type

Definition at line 175 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef SegmentationLevelSetImageFilter itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Self

Inherited typedef from the superclass. Needs to be placed before the next macro.

Definition at line 152 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef SegmentationFunctionType::ImageType itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SpeedImageType

Definition at line 179 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef SparseFieldLevelSetImageFilter< TInputImage, OutputImageType > itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Superclass

Standard class typedefs

Definition at line 160 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef Superclass::TimeStepType itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::TimeStepType

Definition at line 167 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef Superclass::ValueType itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ValueType

Inherited typedef from the superclass.

Definition at line 165 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef SegmentationFunctionType::VectorImageType itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::VectorImageType

The type used for the advection field

Definition at line 178 of file itkSegmentationLevelSetImageFilter.h.

Constructor & Destructor Documentation

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::~SegmentationLevelSetImageFilter ( )

inlineprotectedvirtual

Definition at line 488 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SegmentationLevelSetImageFilter ( )

protected

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SegmentationLevelSetImageFilter ( const Self & )

private

Member Function Documentation

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::AutoGenerateSpeedAdvectionOff ( )

virtual

Turn On/Off automatic generation of Speed and Advection terms when Update is called. If set to Off, the Speed and Advection images must be set explicitly using SetSpeedImage, SetAdvectionImage OR the methods GenerateSpeedImage() and GenerateAdvectionImage() should be called prior to updating the filter.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::AutoGenerateSpeedAdvectionOn ( )

virtual

Turn On/Off automatic generation of Speed and Advection terms when Update is called. If set to Off, the Speed and Advection images must be set explicitly using SetSpeedImage, SetAdvectionImage OR the methods GenerateSpeedImage() and GenerateAdvectionImage() should be called prior to updating the filter.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GenerateAdvectionImage ( )

Allocate and calculate the advection term image in the SegmentationFunction object This method is called automatically on filter execution unless AutoGenerateSpeedAdvection is set to Off.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GenerateData ( )

protectedvirtual

Overridden from ProcessObject to set certain values before starting the finite difference solver and then create an appropriate output

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >.

Reimplemented in itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, and itk::ShapeDetectionLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GenerateSpeedImage ( )

Allocate and calculate the speed term image in the SegmentationFunction object. This method is called automatically on filter execution unless AutoGenerateSpeedAdvection is set to Off.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual const VectorImageType* itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetAdvectionImage ( ) const

inlinevirtual

Return a pointer to the image sampled as the advection term of the segmentation algorithm.

Definition at line 243 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetAdvectionImage(), and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

ValueType itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetAdvectionScaling ( ) const

inline

Definition at line 362 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetAdvectionWeight(), and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual bool itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetAutoGenerateSpeedAdvection ( ) const

virtual

Turn On/Off automatic generation of Speed and Advection terms when Update is called. If set to Off, the Speed and Advection images must be set explicitly using SetSpeedImage, SetAdvectionImage OR the methods GenerateSpeedImage() and GenerateAdvectionImage() should be called prior to updating the filter.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

ValueType itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetCurvatureScaling ( ) const

inline

Definition at line 381 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetCurvatureWeight(), and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual FeatureImageType* itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetFeatureImage ( )

inlinevirtual

Definition at line 208 of file itkSegmentationLevelSetImageFilter.h.

References itk::ProcessObject::GetInput().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

double itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetMaximumCurvatureTimeStep ( ) const

inline

Definition at line 446 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetMaximumCurvatureTimeStep(), and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

unsigned int itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetMaximumIterations ( )

inline

Definition at line 193 of file itkSegmentationLevelSetImageFilter.h.

References itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::GetNumberOfIterations().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

double itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetMaximumPropagationTimeStep ( ) const

inline

Definition at line 465 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetMaximumPropagationTimeStep(), and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual const char* itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

ValueType itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetPropagationScaling ( ) const

inline

Definition at line 345 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetPropagationWeight(), and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual bool itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetReverseExpansionDirection ( ) const

virtual

Turn On/Off the flag which determines whether Positive or Negative speed terms will cause surface expansion. If set to TRUE then negative speed terms will cause the surface to expand and positive speed terms will cause the surface to contract. If set to FALSE (default) then positive speed terms will cause the surface to expand and negative speed terms will cause the surface to contract. This method can be safely used to reverse the expansion/contraction as appropriate to a particular application or data set.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual SegmentationFunctionType* itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetSegmentationFunction ( )

inlinevirtual

Definition at line 429 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual const SpeedImageType* itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetSpeedImage ( ) const

inlinevirtual

Return a pointer to the image sampled as the speed term of the segmentation algorithm.

Definition at line 238 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetSpeedImage(), and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

bool itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetUseMinimalCurvature ( ) const

inline

Definition at line 397 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetUseMinimalCurvature(), and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

bool itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetUseNegativeFeatures ( ) const

inline

Definition at line 280 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_ReverseExpansionDirection.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::InitializeIteration ( )

inlineprotectedvirtual

Overrides parent implementation

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >.

Reimplemented in itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

Definition at line 494 of file itkSegmentationLevelSetImageFilter.h.

References itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::GetElapsedIterations(), itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::GetNumberOfIterations(), itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >::InitializeIteration(), and itk::ProcessObject::UpdateProgress().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::operator= ( const Self & )

private

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ReverseExpansionDirectionOff ( )

virtual

Turn On/Off the flag which determines whether Positive or Negative speed terms will cause surface expansion. If set to TRUE then negative speed terms will cause the surface to expand and positive speed terms will cause the surface to contract. If set to FALSE (default) then positive speed terms will cause the surface to expand and negative speed terms will cause the surface to contract. This method can be safely used to reverse the expansion/contraction as appropriate to a particular application or data set.

Referenced by itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseNegativeFeaturesOff().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ReverseExpansionDirectionOn ( )

virtual

Turn On/Off the flag which determines whether Positive or Negative speed terms will cause surface expansion. If set to TRUE then negative speed terms will cause the surface to expand and positive speed terms will cause the surface to contract. If set to FALSE (default) then positive speed terms will cause the surface to expand and negative speed terms will cause the surface to contract. This method can be safely used to reverse the expansion/contraction as appropriate to a particular application or data set.

Referenced by itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseNegativeFeaturesOn().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetAdvectionImage ( VectorImageType * v )

inline

This function is for advanced applications. Set the image sampled as the advection term of this segmentation method. In general, the advection image is generated automatically by a subclass of this filter.

Definition at line 233 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, and itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetAdvectionImage().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetAdvectionScaling ( ValueType v )

inline

Set/Get the scaling of the advection field. Setting the FeatureScaling parameter will override any existing value for AdvectionScaling.

Definition at line 352 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetAdvectionWeight(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, itk::Object::Modified(), and itk::LevelSetFunction< TImageType >::SetAdvectionWeight().

Referenced by itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetFeatureScaling().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetAutoGenerateSpeedAdvection ( bool _arg )

virtual

Turn On/Off automatic generation of Speed and Advection terms when Update is called. If set to Off, the Speed and Advection images must be set explicitly using SetSpeedImage, SetAdvectionImage OR the methods GenerateSpeedImage() and GenerateAdvectionImage() should be called prior to updating the filter.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCurvatureScaling ( ValueType v )

inline

Set/Get the scaling of the curvature. Use this parameter to increase the influence of curvature on the movement of the surface. Higher values relative to Advection and Propagation values will give smoother surfaces.

Definition at line 371 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetCurvatureWeight(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, itk::Object::Modified(), and itk::LevelSetFunction< TImageType >::SetCurvatureWeight().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetFeatureImage ( const FeatureImageType * f )

inlinevirtual

Set/Get the feature image to be used for speed function of the level set equation. Equivalent to calling Set/GetInput(1, ..)

Definition at line 201 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetFeatureImage(), and itk::ProcessObject::SetNthInput().

Referenced by itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetInput2().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetFeatureScaling ( ValueType v )

inline

Combined scaling of the propagation and advection speed terms. You should use either this -or- Get/SetPropagationScaling and Get/SetAdvectionScaling (if appropriate). See subclasses for details on when and whether to set these parameters.

Definition at line 320 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetAdvectionWeight(), itk::LevelSetFunction< TImageType >::GetPropagationWeight(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetAdvectionScaling(), and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetPropagationScaling().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetInitialImage ( InputImageType * f )

inlinevirtual

Set/Get the initial level set model. Equivalent to calling SetInput(..)

Definition at line 213 of file itkSegmentationLevelSetImageFilter.h.

References itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetInput().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetInput2 ( const FeatureImageType * input )

inline

Set the feature image

Definition at line 219 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetFeatureImage().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumCurvatureTimeStep ( double n )

inline

Set/Get the maximum constraint for the curvature term factor in the time step calculation. Changing this value from the default is not recommended or necessary but could be used to speed up the surface evolution at the risk of creating an unstable solution.

Definition at line 436 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetMaximumCurvatureTimeStep(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, itk::Object::Modified(), and itk::LevelSetFunction< TImageType >::SetMaximumCurvatureTimeStep().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumIterations ( unsigned int i )

inline

Set/Get the maximum number of iterations allowed for the solver. This prevents infinite loops if a solution "bounces".

Definition at line 186 of file itkSegmentationLevelSetImageFilter.h.

References itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetNumberOfIterations().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMaximumPropagationTimeStep ( double n )

inline

Set/Get the maximum constraint for the scalar/vector term factor of the time step calculation. Changing this value from the default is not recommended or necessary but could be used to speed up the surface evolution at the risk of creating an unstable solution.

Definition at line 455 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetMaximumPropagationTimeStep(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, itk::Object::Modified(), and itk::LevelSetFunction< TImageType >::SetMaximumPropagationTimeStep().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetPropagationScaling ( ValueType v )

inline

Set/Get the scaling of the propagation speed. Setting the FeatureScaling parameter overrides any previous values set for PropagationScaling.

Definition at line 335 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetPropagationWeight(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, itk::Object::Modified(), and itk::LevelSetFunction< TImageType >::SetPropagationWeight().

Referenced by itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetFeatureScaling().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetReverseExpansionDirection ( bool _arg )

virtual

Turn On/Off the flag which determines whether Positive or Negative speed terms will cause surface expansion. If set to TRUE then negative speed terms will cause the surface to expand and positive speed terms will cause the surface to contract. If set to FALSE (default) then positive speed terms will cause the surface to expand and negative speed terms will cause the surface to contract. This method can be safely used to reverse the expansion/contraction as appropriate to a particular application or data set.

Referenced by itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseNegativeFeatures().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSegmentationFunction ( SegmentationFunctionType * s )

inlinevirtual

Set the segmentation function. In general, this should only be called by a subclass of this object. It is made public to allow itk::Command objects access. The method is inline to avoid a problem with the gcc 2.95 compiler matching the declaration with the definition.

Definition at line 417 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::Initialize(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, itk::Object::Modified(), and itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::SetDifferenceFunction().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetSpeedImage ( SpeedImageType * s )

inline

This function is for advanced applications. Set the image sampled as the speed term of this segmentation method. In general, the speed image is generated automatically by a subclass of this filter.

Definition at line 227 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, and itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetSpeedImage().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseMinimalCurvature ( bool b )

inline

Definition at line 387 of file itkSegmentationLevelSetImageFilter.h.

References itk::LevelSetFunction< TImageType >::GetUseMinimalCurvature(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction, itk::Object::Modified(), and itk::LevelSetFunction< TImageType >::SetUseMinimalCurvature().

Referenced by itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::UseMinimalCurvatureOff(), and itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::UseMinimalCurvatureOn().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseNegativeFeatures ( bool u )

inline

THIS METHOD IS DEPRECATED AND SHOULD NOT BE USED. Set/Get the value of the UseNegativeFeatures flag. This method is deprecated. Use Set/Get ReverseExpansionDirection instead.

Definition at line 266 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetReverseExpansionDirection().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseNegativeFeaturesOff ( )

inline

Definition at line 257 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ReverseExpansionDirectionOff().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseNegativeFeaturesOn ( )

inline

THIS METHOD IS DEPRECATED AND SHOULD NOT BE USED. This method reverses the speed function direction, effectively changing inside feature values to outside feature values and vice versa.

Definition at line 249 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ReverseExpansionDirectionOn().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::typedef ( Concept::HasNumericTraits< TOutputPixelType > )

This class requires OutputHasNumericTraitsCheck in the form of ( Concept::HasNumericTraits< TOutputPixelType > )

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::UseMinimalCurvatureOff ( )

inline

Definition at line 407 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseMinimalCurvature().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::UseMinimalCurvatureOn ( )

inline

Definition at line 402 of file itkSegmentationLevelSetImageFilter.h.

References itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetUseMinimalCurvature().

Member Data Documentation

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

bool itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_AutoGenerateSpeedAdvection

protected

Flag to indicate whether Speed and Advection images are automatically generated when running the filter. Otherwise, a pointer to images must be explicitly set or GenerateSpeedImage() and/or GenerateAdvectionImage() called directly before updating the filter

Definition at line 515 of file itkSegmentationLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

bool itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_ReverseExpansionDirection

protected

Flag which sets the inward/outward direction of propagation speed. See SetReverseExpansionDirection for more information.

Definition at line 509 of file itkSegmentationLevelSetImageFilter.h.

Referenced by itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetUseNegativeFeatures().

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

SegmentationFunctionType* itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_SegmentationFunction

private

Definition at line 521 of file itkSegmentationLevelSetImageFilter.h.

The documentation for this class was generated from the following file:

itkSegmentationLevelSetImageFilter.h

Detailed Description

template<typename TInputImage, typename TFeatureImage, typename TOutputPixelType = float> class itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >

Public Types

Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<typename TInputImage, typename TFeatureImage, typename TOutputPixelType = float>
class itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >