ITK  4.6.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Protected Attributes | Static Protected Attributes | Private Member Functions | Private Attributes | List of all members
itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage > Class Template Reference

#include <itkSparseFieldLevelSetImageFilter.h>

+ Inheritance diagram for itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >:
+ Collaboration diagram for itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >:

Detailed Description

template<typename TInputImage, typename TOutputImage>
class itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >

This class implements a finite difference partial differential equation solver for evolving surfaces embedded in volumes as level-sets.

The ``sparse field'' approach to the level-set model is a logical extension of the classical narrow band technique, which seeks to minimize computational effort by restricting calculations to those pixels in a region of interest around the moving surface (the $k$-level curve). The sparse field method uses a narrow band that is exactly the width needed to calculate changes on the level curve for the next time step. Because the band of grid points under consideration is so sparse, this approach has several advantages: the algorithm does exactly the number of calculations needed to determine the next position of the $k$-level curve, and the distance transform around the level curve can be recomputed at each iteration.
The sparse field algorithm works by constructing a linked list of indices that are adjacent to the $k$-level set. These indices are called the ``active set''. The values at these active set indices define the position of the $k$-level curve. The active set indices are shifted to follow the distance transform embedding of the $k$-level curve as their values move in and out of a fixed numerical range about $k$. In this way, the active set is maintained as only those pixels adjacent to the evolving surface. Calculations are then done only at indices contained in the active set.
The city-block neighborhoods of the active set indices are maintained as separate lists called ``layers''. At each iteration, the values at the layers are reinitialized as the distance transform from the active set. The number of layers can be adjusted according to the footprint needed for the calculations on the level curve.
Briefly, the sparse field solver algorithm is as follows:
  1. For each active layer index $x_j$: Compute the change at $u_{x_j}$, the grid point in the embedding, based on local geometry and external forces and using a stable numerical scheme.
  2. For each active layer index $x_j$, add the change to the grid point value and redefine the active set indices and those of its layers based on any value changes which have moved outside of the numerical range allowed for the active set.
  3. Starting with the first layers adjacent to the active set and moving outwards, reconstruct the distance transform by setting values in the layers according to their neighbors. At the very outer layers, add or remove indices which have come into or moved out of the sparse field.
HOW TO USE THIS CLASS
Typically, this class should be subclassed with additional functionality for specific applications. It is possible, however to use this solver as a filter directly by instantiating it and supplying it with an appropriate LevelSetFunction object via the SetDifferenceFunction method. See the subclasses and their associated documentation for more information on using this class. Also see the FiniteDifferenceImageFilter documentation for a general overview of this class of solvers.
INPUTS
This filter takes an itk::Image as input. The appropriate type of input image is entirely determined by the application. As a rule, however, the input type is immediately converted to the output type before processing. This is because the input is not assumed to be a real value type and must be converted to signed, real values for the calculations. The input values will also be shifted by the $k$ isosurface value so that the algorithm only needs to consider the zero level set.
OUTPUTS
The output of the filter is the distance transform embedding of the isosurface as the zero level set. Values INSIDE the surface will be NEGATIVE and values OUTSIDE the surface will be POSITIVE. The distance transform only holds for those indices in layers around the active layer. Elsewhere, the values are a fixed positive or negative that is one greater than the layer of greatest magnitude. In other words, if there are three layers, then inside values reach a minimum of -4.0 and outside values a maximum of 4.0.
PARAMETERS
The NumberOfLayers parameter controls the number of layers inside and outside of the active set (see description above). The sparse field will contain 2*NumberOfLayers+1 lists of indices: the active set and city block neighbors inside and outside the active set. It is important to specify enough layers to cover the footprint of your calculations. Curvature calculations require a minimum of 2 layers. Higher order derivatives and other geometrical measures may require more layers. If too few layers are specified, then the calculations will pull values from the background, which may consist of arbitrary or random values.
The IsoSurfaceValue indicates which value in the input represents the interface of interest. By default, this value is zero. When the solver initializes, it will subtract the IsoSurfaceValue from all values, in the input, shifting the isosurface of interest to zero in the output.
IMPORTANT!
Read the documentation for FiniteDifferenceImageFilter before attempting to use this filter. The solver requires that you specify a FiniteDifferenceFunction to use for calculations. This is set using the method SetDifferenceFunction in the parent class.
REFERENCES
Whitaker, Ross. A Level-Set Approach to 3D Reconstruction from Range Data. International Journal of Computer Vision. V. 29 No. 3, 203-231. 1998.
Sethian, J.A. Level Set Methods. Cambridge University Press. 1996.

Definition at line 230 of file itkSparseFieldLevelSetImageFilter.h.

Public Types

typedef SmartPointer< const SelfConstPointer
 
typedef OutputImageType::IndexType IndexType
 
typedef TInputImage InputImageType
 
typedef std::vector
< LayerPointerType
LayerListType
 
typedef ObjectStore
< LayerNodeType
LayerNodeStorageType
 
typedef
SparseFieldLevelSetNode
< IndexType
LayerNodeType
 
typedef LayerType::Pointer LayerPointerType
 
typedef SparseFieldLayer
< LayerNodeType
LayerType
 
typedef
Superclass::NeighborhoodScalesType 
NeighborhoodScalesType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RadiusType RadiusType
 
typedef
SparseFieldLevelSetImageFilter 
Self
 
typedef Image< StatusType,
itkGetStaticConstMacro(ImageDimension) > 
StatusImageType
 
typedef signed char StatusType
 
typedef
FiniteDifferenceImageFilter
< TInputImage, TOutputImage > 
Superclass
 
typedef Superclass::TimeStepType TimeStepType
 
typedef std::vector< ValueTypeUpdateBufferType
 
typedef OutputImageType::ValueType ValueType
 
- Public Types inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
FiniteDifferenceFunction
< TOutputImage > 
FiniteDifferenceFunctionType
 
typedef TInputImage InputImageType
 
typedef TInputImage::PixelType InputPixelType
 
typedef NumericTraits
< InputPixelType >::ValueType 
InputPixelValueType
 
typedef
FiniteDifferenceFunctionType::NeighborhoodScalesType 
NeighborhoodScalesType
 
typedef TOutputImage OutputImageType
 
typedef TOutputImage::PixelType OutputPixelType
 
typedef NumericTraits
< OutputPixelType >::ValueType 
OutputPixelValueType
 
typedef OutputPixelType PixelType
 
typedef SmartPointer< SelfPointer
 
typedef
FiniteDifferenceFunctionType::RadiusType 
RadiusType
 
typedef FiniteDifferenceImageFilter Self
 
typedef InPlaceImageFilter
< TInputImage, TOutputImage > 
Superclass
 
typedef
FiniteDifferenceFunctionType::TimeStepType 
TimeStepType
 
- Public Types inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImagePointer 
OutputImagePointer
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef Superclass::OutputImageType OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef InPlaceImageFilter Self
 
typedef ImageToImageFilter
< TInputImage, TOutputImage > 
Superclass
 
- Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TInputImage InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource< TOutputImage > Superclass
 
- Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual const char * GetNameOfClass () const
 
 typedef (Concept::EqualityComparable< typename TOutputImage::PixelType >) OutputEqualityComparableCheck
 
 typedef (Concept::Convertible< double, typename TOutputImage::PixelType >) DoubleConvertibleToOutputCheck
 
 typedef (Concept::OStreamWritable< typename TOutputImage::PixelType >) OutputOStreamWritableCheck
 
virtual void SetNumberOfLayers (unsigned int _arg)
 
virtual unsigned int GetNumberOfLayers () const
 
virtual void SetIsoSurfaceValue (ValueType _arg)
 
virtual ValueType GetIsoSurfaceValue () const
 
virtual void SetInterpolateSurfaceLocation (bool _arg)
 
virtual bool GetInterpolateSurfaceLocation () const
 
void InterpolateSurfaceLocationOn ()
 
void InterpolateSurfaceLocationOff ()
 
- Public Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
virtual const
FiniteDifferenceFunctionType::Pointer
GetDifferenceFunction () const
 
virtual const IdentifierTypeGetElapsedIterations () const
 
virtual bool GetIsInitialized ()
 
virtual void SetDifferenceFunction (FiniteDifferenceFunctionType *_arg)
 
virtual void SetIsInitialized (bool _arg)
 
void SetStateToInitialized ()
 
void SetStateToUninitialized ()
 
virtual void SetNumberOfIterations (IdentifierType _arg)
 
virtual const IdentifierTypeGetNumberOfIterations () const
 
virtual void SetUseImageSpacing (bool _arg)
 
virtual void UseImageSpacingOn ()
 
virtual void UseImageSpacingOff ()
 
virtual const bool & GetUseImageSpacing () const
 
virtual void SetMaximumRMSError (double _arg)
 
virtual const double & GetMaximumRMSError () const
 
virtual void SetRMSChange (double _arg)
 
virtual const double & GetRMSChange () const
 
virtual void SetManualReinitialization (bool _arg)
 
virtual const bool & GetManualReinitialization () const
 
virtual void ManualReinitializationOn ()
 
virtual void ManualReinitializationOff ()
 
- Public Member Functions inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
virtual bool CanRunInPlace () const
 
virtual void SetInPlace (bool _arg)
 
virtual bool GetInPlace () const
 
virtual void InPlaceOn ()
 
virtual void InPlaceOff ()
 
- Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageTypeGetInput (void) const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput ()
 
virtual void PopFrontInput ()
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TInputImage *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput (void)
 
const OutputImageTypeGetOutput (void) const
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) ITK_OVERRIDE
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
NameArray GetInputNames () const
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
DataObjectPointerArray GetInputs ()
 
DataObjectPointerArray GetOutputs ()
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary (void)
 
const MetaDataDictionaryGetMetaDataDictionary (void) const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const ITK_OVERRIDE
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) ITK_OVERRIDE
 
virtual void UnRegister () const ITK_OVERRIDE
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static const unsigned int ImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
static const unsigned int ImageDimension = OutputImageType::ImageDimension
 
- Static Public Attributes inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
 
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
 

Protected Member Functions

void AllocateUpdateBuffer ()
 
void ApplyUpdate (const TimeStepType &dt)
 
TimeStepType CalculateChange ()
 
virtual ValueType CalculateUpdateValue (const IndexType &, const TimeStepType &dt, const ValueType &value, const ValueType &change)
 
void ConstructActiveLayer ()
 
void ConstructLayer (StatusType from, StatusType to)
 
void CopyInputToOutput ()
 
virtual ValueType GetValueOne () const
 
virtual ValueType GetValueZero () const
 
void Initialize ()
 
void InitializeActiveLayerValues ()
 
virtual void InitializeBackgroundPixels ()
 
virtual void PostProcessOutput ()
 
virtual void PrintSelf (std::ostream &os, Indent indent) const
 
void ProcessOutsideList (LayerType *OutsideList, StatusType ChangeToStatus)
 
void ProcessStatusList (LayerType *InputList, LayerType *OutputList, StatusType ChangeToStatus, StatusType SearchForStatus)
 
void PropagateAllLayerValues ()
 
void PropagateLayerValues (StatusType from, StatusType to, StatusType promote, int InOrOut)
 
 SparseFieldLevelSetImageFilter ()
 
void UpdateActiveLayerValues (TimeStepType dt, LayerType *StatusUpList, LayerType *StatusDownList)
 
 ~SparseFieldLevelSetImageFilter ()
 
- Protected Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
 FiniteDifferenceImageFilter ()
 
virtual void GenerateData ()
 
virtual void GenerateInputRequestedRegion ()
 
virtual bool Halt ()
 
virtual void InitializeIteration ()
 
virtual TimeStepType ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const
 
virtual void SetElapsedIterations (IdentifierType _arg)
 
virtual bool ThreadedHalt (void *)
 
virtual ~FiniteDifferenceImageFilter ()
 
- Protected Member Functions inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
virtual void AllocateOutputs ()
 
virtual bool GetRunningInPlace () const
 
 InPlaceImageFilter ()
 
virtual void ReleaseInputs ()
 
 ~InPlaceImageFilter ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
 ImageToImageFilter ()
 
virtual void VerifyInputInformation ()
 
 ~ImageToImageFilter ()
 
void PushBackInput (const DataObject *input)
 
void PushFrontInput (const DataObject *input)
 
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AfterThreadedGenerateData ()
 
virtual void BeforeThreadedGenerateData ()
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter (void) const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
void SetRequiredInputNames (const NameArray &)
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Protected Attributes

double m_ConstantGradientValue
 
const InputImageTypem_InputImage
 
bool m_InterpolateSurfaceLocation
 
ValueType m_IsoSurfaceValue
 
LayerNodeStorageType::Pointer m_LayerNodeStore
 
LayerListType m_Layers
 
SparseFieldCityBlockNeighborList
< NeighborhoodIterator
< OutputImageType > > 
m_NeighborList
 
unsigned int m_NumberOfLayers
 
OutputImageTypem_OutputImage
 
OutputImageType::Pointer m_ShiftedImage
 
StatusImageType::Pointer m_StatusImage
 
UpdateBufferType m_UpdateBuffer
 
- Protected Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
IdentifierType m_ElapsedIterations
 
bool m_IsInitialized
 
bool m_ManualReinitialization
 
double m_MaximumRMSError
 
IdentifierType m_NumberOfIterations
 
double m_RMSChange
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
InternalReferenceCountType m_ReferenceCount
 
SimpleFastMutexLock m_ReferenceCountLock
 

Static Protected Attributes

static StatusType m_StatusActiveChangingDown
 
static StatusType m_StatusActiveChangingUp
 
static StatusType m_StatusBoundaryPixel
 
static StatusType m_StatusChanging
 
static StatusType m_StatusNull
 
static ValueType m_ValueOne
 
static ValueType m_ValueZero
 

Private Member Functions

void operator= (const Self &)
 
 SparseFieldLevelSetImageFilter (const Self &)
 

Private Attributes

bool m_BoundsCheckingActive
 

Additional Inherited Members

- Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 
- Protected Types inherited from itk::LightObject
typedef int InternalReferenceCountType
 
- Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 

Member Typedef Documentation

template<typename TInputImage, typename TOutputImage>
typedef SmartPointer< const Self > itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::ConstPointer

Definition at line 239 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef OutputImageType::IndexType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::IndexType

Definition at line 255 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef TInputImage itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::InputImageType

Information derived from the image types.

Definition at line 250 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef std::vector< LayerPointerType > itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::LayerListType

A type for a list of LayerPointerTypes

Definition at line 271 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef ObjectStore< LayerNodeType > itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::LayerNodeStorageType

Memory pre-allocator used to manage layer nodes in a multi-threaded environment.

Definition at line 283 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef SparseFieldLevelSetNode< IndexType > itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::LayerNodeType

Node type used in sparse field layer lists.

Definition at line 264 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef LayerType::Pointer itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::LayerPointerType

Definition at line 268 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef SparseFieldLayer< LayerNodeType > itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::LayerType

A list type used in the algorithm.

Definition at line 267 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef Superclass::NeighborhoodScalesType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::NeighborhoodScalesType

Definition at line 244 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef TOutputImage itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::OutputImageType

Definition at line 254 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef SmartPointer< Self > itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::Pointer

Definition at line 238 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef Superclass::RadiusType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::RadiusType

Definition at line 243 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef SparseFieldLevelSetImageFilter itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs

Definition at line 236 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef Image< StatusType, itkGetStaticConstMacro(ImageDimension) > itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::StatusImageType

The type of the image used to index status information. Necessary for the internals of the algorithm.

Definition at line 279 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef signed char itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::StatusType

Type used for storing status information

Definition at line 274 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef FiniteDifferenceImageFilter< TInputImage, TOutputImage > itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::Superclass

Definition at line 237 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef Superclass::TimeStepType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::TimeStepType

Typedefs from the superclass

Definition at line 242 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef std::vector< ValueType > itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::UpdateBufferType

Container type used to store updates to the active layer.

Definition at line 286 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
typedef OutputImageType::ValueType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::ValueType

The data type used in numerical computations. Derived from the output image type.

Definition at line 261 of file itkSparseFieldLevelSetImageFilter.h.

Constructor & Destructor Documentation

template<typename TInputImage, typename TOutputImage>
itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::SparseFieldLevelSetImageFilter ( )
protected
template<typename TInputImage, typename TOutputImage>
itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::~SparseFieldLevelSetImageFilter ( )
protected
template<typename TInputImage, typename TOutputImage>
itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::SparseFieldLevelSetImageFilter ( const Self )
private

Member Function Documentation

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::AllocateUpdateBuffer ( )
protectedvirtual

Reserves memory in the update buffer. Called before each iteration.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::ApplyUpdate ( const TimeStepType dt)
protectedvirtual

Applies the update buffer values to the active layer and reconstructs the sparse field layers for the next iteration.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
TimeStepType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::CalculateChange ( )
protectedvirtual

Traverses the active layer list and calculates the change at these indices to be applied in the current iteration.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
virtual ValueType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::CalculateUpdateValue ( const IndexType ,
const TimeStepType dt,
const ValueType value,
const ValueType change 
)
inlineprotectedvirtual

This function allows a subclass to override the way in which updates to output values are applied during each iteration. The default simply follows the standard finite difference scheme of scaling the change by the timestep and adding to the value of the previous iteration.

Reimplemented in itk::AntiAliasBinaryImageFilter< TInputImage, TOutputImage >.

Definition at line 341 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::ConstructActiveLayer ( )
protected

Constructs the active layer and initialize the first layers inside and outside of the active layer. The active layer defines the position of the zero level set by its values, which are constrained within a range around zero.

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::ConstructLayer ( StatusType  from,
StatusType  to 
)
protected

Initializes a layer of the sparse field using a previously initialized layer. Builds the list of nodes in m_Layer[to] using m_Layer[from]. Marks values in the m_StatusImage.

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::CopyInputToOutput ( )
protectedvirtual

Copies the input to the output image. Processing occurs on the output image, so the data type of the output image determines the precision of the calculations (i.e. double or float). This method overrides the parent class method to do some additional processing.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
virtual::itk::LightObject::Pointer itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::CreateAnother ( void  ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

Reimplemented in itk::AntiAliasBinaryImageFilter< TInputImage, TOutputImage >, and itk::UnsharpMaskLevelSetImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
virtual bool itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::GetInterpolateSurfaceLocation ( ) const
virtual

Get the RMS change calculated in the PREVIOUS iteration. This value is the square root of the average square of the change value of all pixels updated during the previous iteration. Get/Set the value of the InterpolateSurfaceLocation flag. This flag tells the solver whether or not to interpolate for the surface location when calculating change at a voxel location. Turned on by default. Some applications may not use this value and can safely turn the flag off.

template<typename TInputImage, typename TOutputImage>
virtual ValueType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::GetIsoSurfaceValue ( ) const
virtual

Set/Get the value of the isosurface to use in the input image.

template<typename TInputImage, typename TOutputImage>
virtual const char* itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const
virtual
template<typename TInputImage, typename TOutputImage>
virtual unsigned int itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::GetNumberOfLayers ( ) const
virtual

Set/Get the number of layers to use in the sparse field. Argument is the number of layers on ONE side of the active layer, so the total layers in the sparse field is 2 * NumberOfLayers +1

Referenced by itk::SparseFieldFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >::SetNumberOfLayers().

template<typename TInputImage, typename TOutputImage>
virtual ValueType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::GetValueOne ( ) const
protectedvirtual
template<typename TInputImage, typename TOutputImage>
virtual ValueType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::GetValueZero ( ) const
protectedvirtual
template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::Initialize ( )
protectedvirtual

Constructs the sparse field layers and initializes their values.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::InitializeActiveLayerValues ( )
protected

Initializes the values of the active layer set.

template<typename TInputImage, typename TOutputImage>
virtual void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::InitializeBackgroundPixels ( )
protectedvirtual

This method pre-processes pixels inside and outside the sparse field layers. The default is to set them to positive and negative values, respectively. This is not necessary as part of the calculations, but produces a more intuitive output for the user.

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::InterpolateSurfaceLocationOff ( )
inline

See Get/SetInterpolateSurfaceLocation

Definition at line 317 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::InterpolateSurfaceLocationOn ( )
inline

See Get/SetInterpolateSurfaceLocation

Definition at line 315 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
static Pointer itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::New ( )
static

Method for creation through the object factory.

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::operator= ( const Self )
private
template<typename TInputImage, typename TOutputImage>
virtual void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::PostProcessOutput ( )
protectedvirtual

This method packages the output(s) into a consistent format. The default implementation produces a volume with the final solution values in the sparse field, and inside and outside values elsewhere as appropriate.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
virtual void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, itk::SparseFieldFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >, itk::ThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, itk::AntiAliasBinaryImageFilter< TInputImage, TOutputImage >, itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, itk::GeodesicActiveContourLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, itk::CurvesLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, itk::ShapeDetectionLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, itk::LaplacianSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, itk::AnisotropicFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >, itk::IsotropicFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >, and itk::UnsharpMaskLevelSetImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::ProcessOutsideList ( LayerType OutsideList,
StatusType  ChangeToStatus 
)
protected
template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::ProcessStatusList ( LayerType InputList,
LayerType OutputList,
StatusType  ChangeToStatus,
StatusType  SearchForStatus 
)
protected
template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::PropagateAllLayerValues ( )
protected

Adjusts the values associated with all the index layers of the sparse field by propagating out one layer at a time from the active set. This method also takes care of deleting nodes from the layers which have been marked in the status image as having been moved to other layers.

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::PropagateLayerValues ( StatusType  from,
StatusType  to,
StatusType  promote,
int  InOrOut 
)
protected

Adjusts the values in a single layer "to" using values in a neighboring layer "from". The list of indices in "to" are traversed and assigned new values appropriately. Any indices in "to" without neighbors in "from" are moved into the "promote" layer (or deleted if "promote" is greater than the number of layers). "InOrOut" == 1 indicates this propagation is inwards (more negative). "InOrOut" == 2 indicates this propagation is outwards (more positive).

template<typename TInputImage, typename TOutputImage>
virtual void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::SetInterpolateSurfaceLocation ( bool  _arg)
virtual

Get the RMS change calculated in the PREVIOUS iteration. This value is the square root of the average square of the change value of all pixels updated during the previous iteration. Get/Set the value of the InterpolateSurfaceLocation flag. This flag tells the solver whether or not to interpolate for the surface location when calculating change at a voxel location. Turned on by default. Some applications may not use this value and can safely turn the flag off.

Referenced by itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::InterpolateSurfaceLocationOff(), and itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >::InterpolateSurfaceLocationOn().

template<typename TInputImage, typename TOutputImage>
virtual void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::SetIsoSurfaceValue ( ValueType  _arg)
virtual

Set/Get the value of the isosurface to use in the input image.

template<typename TInputImage, typename TOutputImage>
virtual void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::SetNumberOfLayers ( unsigned int  _arg)
virtual

Set/Get the number of layers to use in the sparse field. Argument is the number of layers on ONE side of the active layer, so the total layers in the sparse field is 2 * NumberOfLayers +1

Reimplemented in itk::SparseFieldFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >.

Referenced by itk::SparseFieldFourthOrderLevelSetImageFilter< TInputImage, TOutputImage >::SetNumberOfLayers().

template<typename TInputImage, typename TOutputImage>
itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::typedef ( Concept::EqualityComparable< typename TOutputImage::PixelType >  )

This class requires OutputEqualityComparableCheck in the form of ( Concept::EqualityComparable< typename TOutputImage::PixelType > )

template<typename TInputImage, typename TOutputImage>
itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::typedef ( Concept::Convertible< double, typename TOutputImage::PixelType >  )

This class requires DoubleConvertibleToOutputCheck in the form of ( Concept::Convertible< double, typename TOutputImage::PixelType > )

template<typename TInputImage, typename TOutputImage>
itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::typedef ( Concept::OStreamWritable< typename TOutputImage::PixelType >  )

This class requires OutputOStreamWritableCheck in the form of ( Concept::OStreamWritable< typename TOutputImage::PixelType > )

template<typename TInputImage, typename TOutputImage>
void itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::UpdateActiveLayerValues ( TimeStepType  dt,
LayerType StatusUpList,
LayerType StatusDownList 
)
protected

Updates the active layer values using m_UpdateBuffer. Also creates an "up" and "down" list for promotion/demotion of indices leaving the active set.

Member Data Documentation

template<typename TInputImage, typename TOutputImage>
const unsigned int itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::ImageDimension = TOutputImage::ImageDimension
static

Definition at line 257 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
bool itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_BoundsCheckingActive
private

This flag is true when methods need to check boundary conditions and false when methods do not need to check for boundary conditions.

Definition at line 509 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
double itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_ConstantGradientValue
protected

The constant gradient to maintain between isosurfaces in the sparse-field of the level-set image. This value defaults to 1.0

Definition at line 431 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
const InputImageType* itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_InputImage
protected

Definition at line 500 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
bool itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_InterpolateSurfaceLocation
protected

The RMS change calculated from each update. Can be used by a subclass to determine halting criteria. Valid only for the previous iteration, not during the current iteration. Calculated in ApplyUpdate. This flag tells the solver whether or not to interpolate for the actual surface location when calculating change at each active layer node. By default this is turned on. Subclasses which do not sample propagation (speed), advection, or curvature terms should turn this flag off.

Definition at line 498 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
ValueType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_IsoSurfaceValue
protected

The value in the input which represents the isosurface of interest.

Definition at line 483 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
LayerNodeStorageType::Pointer itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_LayerNodeStore
protected

Storage for layer node objects.

Definition at line 480 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
LayerListType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_Layers
protected

An array which contains all of the layers needed in the sparse field. Layers are organized as follows: m_Layer[0] = active layer, m_Layer[i:odd] = inside layer (i+1)/2, m_Layer[i:even] = outside layer i/2

Definition at line 468 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
SparseFieldCityBlockNeighborList< NeighborhoodIterator< OutputImageType > > itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_NeighborList
protected

Connectivity information for examining neighbor pixels.

Definition at line 423 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
unsigned int itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_NumberOfLayers
protected

The number of layers to use in the sparse field. Sparse field will consist of m_NumberOfLayers layers on both sides of a single active layer. This active layer is the interface of interest, i.e. the zero level set.

Definition at line 474 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
OutputImageType* itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_OutputImage
protected

Definition at line 501 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
OutputImageType::Pointer itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_ShiftedImage
protected

This image is a copy of the input with m_IsoSurfaceValue subtracted from each pixel. This way we only need to consider the zero level set in our calculations. Makes the implementation easier and more efficient.

Definition at line 462 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
StatusType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_StatusActiveChangingDown
staticprotected

Special status value which indicates a pending change to a more negative sparse field.

Definition at line 449 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
StatusType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_StatusActiveChangingUp
staticprotected

Special status value which indicates a pending change to a more positive sparse field.

Definition at line 445 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
StatusType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_StatusBoundaryPixel
staticprotected

Special status value which indicates a pixel is on the boundary of the image

Definition at line 453 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
StatusType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_StatusChanging
staticprotected

Special status value which indicates pending change to another sparse field layer.

Definition at line 441 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
StatusImageType::Pointer itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_StatusImage
protected

An image of status values used internally by the algorithm.

Definition at line 477 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
StatusType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_StatusNull
staticprotected

Special status value used as a default for indices which have no meaningful status.

Definition at line 457 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
UpdateBufferType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_UpdateBuffer
protected

The update buffer used to store change values computed in CalculateChange.

Definition at line 487 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
ValueType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_ValueOne
staticprotected

Multiplicative identity of the ValueType.

Definition at line 434 of file itkSparseFieldLevelSetImageFilter.h.

template<typename TInputImage, typename TOutputImage>
ValueType itk::SparseFieldLevelSetImageFilter< TInputImage, TOutputImage >::m_ValueZero
staticprotected

Additive identity of the ValueType.

Definition at line 437 of file itkSparseFieldLevelSetImageFilter.h.


The documentation for this class was generated from the following file: