#include <itkMembershipSample.h>

Inheritance diagram for itk::Statistics::MembershipSample< TSample >:

Collaboration diagram for itk::Statistics::MembershipSample< TSample >:

Detailed Description

template<typename TSample>
class itk::Statistics::MembershipSample< TSample >

Container for storing the instance-identifiers of other sample with their associated class labels.

This class does not store any measurement data. In a sense, you can think it as an additional information to basic samples (such as Histogram, PointSetListSampleAdaptor, and ImageToListSampleAdaptor). The additional information is a class label for a measurement vector. Obviously without such basic types of sample, this one is meaningless. You can call any basic methods that has been defined in the Sample class such as GetMeasurementVector and GetFrequency. You can query the class label for an instance using an instance-identifier. Another new and important method is the GetClassSample method. With a given class label, it returns a pointer to the Subsample object that has all the instance-identifiers of instances that belong to the class.

This class is templated over the type of the basic sample. To use all the method, you should first plug in a basic type sample using the SetSample method

Wiki Examples:

Examples:: Statistics/MembershipSample.cxx, Statistics/MembershipSampleGenerator.cxx, and Statistics/SelectiveSubsampleGenerator.cxx.

Definition at line 56 of file itkMembershipSample.h.

Classes
class	ConstIterator

class	Iterator

Public Types
typedef SampleType::AbsoluteFrequencyType	AbsoluteFrequencyType

typedef itksys::hash_map < InstanceIdentifier, ClassLabelType >	ClassLabelHolderType

typedef IdentifierType	ClassLabelType

typedef ClassSampleType::ConstPointer	ClassSampleConstPointer

typedef ClassSampleType::Pointer	ClassSamplePointer

typedef Subsample< SampleType >	ClassSampleType

typedef SmartPointer< const Self >	ConstPointer

typedef SampleType::InstanceIdentifier	InstanceIdentifier

typedef SampleType::MeasurementType	MeasurementType

typedef SampleType::MeasurementVectorType	MeasurementVectorType

typedef SmartPointer< Self >	Pointer

typedef SampleType::ConstPointer	SampleConstPointer

typedef TSample	SampleType

typedef MembershipSample	Self

typedef DataObject	Superclass

typedef SampleType::TotalAbsoluteFrequencyType	TotalAbsoluteFrequencyType

typedef std::vector < ClassLabelType >	UniqueClassLabelsType

Public Types inherited from itk::DataObject
typedef SmartPointer< const Self >	ConstPointer

typedef std::string	DataObjectIdentifierType

typedef std::vector< Pointer > ::size_type	DataObjectPointerArraySizeType

typedef SmartPointer< Self >	Pointer

typedef DataObject	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
void	AddInstance (const ClassLabelType &classLabel, const InstanceIdentifier &id)

Iterator	Begin ()

ConstIterator	Begin () const

Iterator	End ()

ConstIterator	End () const

unsigned int	GetClassLabel (const InstanceIdentifier &id) const

const ClassLabelHolderType	GetClassLabelHolder () const

const ClassSampleType *	GetClassSample (const ClassLabelType &classLabel) const

AbsoluteFrequencyType	GetFrequency (const InstanceIdentifier &id) const

MeasurementType	GetMeasurement (const InstanceIdentifier &id, const unsigned int &dimension)

const MeasurementVectorType &	GetMeasurementVector (const InstanceIdentifier &id) const

virtual unsigned int	GetNumberOfClasses () const

TotalAbsoluteFrequencyType	GetTotalFrequency () const

virtual void	Graft (const DataObject *thatObject) ITK_OVERRIDE

void	SetNumberOfClasses (unsigned int numberOfClasses)


virtual void	SetSample (const SampleType *_arg)

virtual const SampleType *	GetSample () const

Public Member Functions inherited from itk::DataObject
virtual void	CopyInformation (const DataObject *)

virtual void	DataHasBeenGenerated ()

void	DisconnectPipeline ()

bool	GetDataReleased () const

virtual const bool &	GetReleaseDataFlag () const

SmartPointerForwardReference < ProcessObject >	GetSource () const

DataObjectPointerArraySizeType	GetSourceOutputIndex () const

const DataObjectIdentifierType &	GetSourceOutputName () const

virtual ModifiedTimeType	GetUpdateMTime () const

virtual void	Initialize ()

virtual void	PrepareForNewData ()

virtual void	PropagateRequestedRegion ()

void	ReleaseData ()

virtual void	ReleaseDataFlagOff ()

virtual void	ReleaseDataFlagOn ()

virtual bool	RequestedRegionIsOutsideOfTheBufferedRegion ()

virtual void	ResetPipeline ()

void	SetReleaseDataFlag (bool flag)

virtual void	SetRequestedRegion (const DataObject *)

virtual void	SetRequestedRegionToLargestPossibleRegion ()

bool	ShouldIReleaseData () const

virtual void	Update ()

virtual void	UpdateOutputData ()

virtual void	UpdateOutputInformation ()

virtual bool	VerifyRequestedRegion ()

void	SetPipelineMTime (ModifiedTimeType time)

virtual const ModifiedTimeType &	GetPipelineMTime () const

virtual void	SetRealTimeStamp (RealTimeStamp _arg)

virtual const RealTimeStamp &	GetRealTimeStamp () const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary (void)

const MetaDataDictionary &	GetMetaDataDictionary (void) const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const ITK_OVERRIDE

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) ITK_OVERRIDE

virtual void	UnRegister () const ITK_OVERRIDE

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Protected Member Functions
	MembershipSample ()

virtual void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE

virtual	~MembershipSample ()

Protected Member Functions inherited from itk::DataObject
	DataObject ()

virtual void	PropagateResetPipeline ()

	~DataObject ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Member Functions
int	GetInternalClassLabel (const ClassLabelType classLabel) const

	MembershipSample (const Self &)

void	operator= (const Self &)

Private Attributes
ClassLabelHolderType	m_ClassLabelHolder

std::vector< ClassSamplePointer >	m_ClassSamples

unsigned int	m_NumberOfClasses

SampleConstPointer	m_Sample

UniqueClassLabelsType	m_UniqueClassLabels

virtual const char *	GetNameOfClass () const

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

static Pointer	New ()

Additional Inherited Members
Static Public Member Functions inherited from itk::DataObject
static bool	GetGlobalReleaseDataFlag ()

static void	GlobalReleaseDataFlagOff ()

static void	GlobalReleaseDataFlagOn ()

static void	SetGlobalReleaseDataFlag (bool val)

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType

Protected Attributes inherited from itk::LightObject
InternalReferenceCountType	m_ReferenceCount

SimpleFastMutexLock	m_ReferenceCountLock

Member Typedef Documentation

template<typename TSample >

typedef SampleType::AbsoluteFrequencyType itk::Statistics::MembershipSample< TSample >::AbsoluteFrequencyType

Definition at line 78 of file itkMembershipSample.h.

template<typename TSample >

typedef itksys::hash_map< InstanceIdentifier, ClassLabelType > itk::Statistics::MembershipSample< TSample >::ClassLabelHolderType

Typedef for the storage that holds a class label for each instance. The relationship between instances and class label is one-to-one

Definition at line 88 of file itkMembershipSample.h.

template<typename TSample >

typedef IdentifierType itk::Statistics::MembershipSample< TSample >::ClassLabelType

Definition at line 81 of file itkMembershipSample.h.

template<typename TSample >

typedef ClassSampleType::ConstPointer itk::Statistics::MembershipSample< TSample >::ClassSampleConstPointer

Definition at line 94 of file itkMembershipSample.h.

template<typename TSample >

typedef ClassSampleType::Pointer itk::Statistics::MembershipSample< TSample >::ClassSamplePointer

Definition at line 93 of file itkMembershipSample.h.

template<typename TSample >

typedef Subsample< SampleType > itk::Statistics::MembershipSample< TSample >::ClassSampleType

Typedef for each subsample that stores instance identifiers of instances that belong to a class

Definition at line 92 of file itkMembershipSample.h.

template<typename TSample >

typedef SmartPointer< const Self > itk::Statistics::MembershipSample< TSample >::ConstPointer

Definition at line 63 of file itkMembershipSample.h.

template<typename TSample >

typedef SampleType::InstanceIdentifier itk::Statistics::MembershipSample< TSample >::InstanceIdentifier

Definition at line 75 of file itkMembershipSample.h.

template<typename TSample >

typedef SampleType::MeasurementType itk::Statistics::MembershipSample< TSample >::MeasurementType

Definition at line 74 of file itkMembershipSample.h.

template<typename TSample >

typedef SampleType::MeasurementVectorType itk::Statistics::MembershipSample< TSample >::MeasurementVectorType

Definition at line 73 of file itkMembershipSample.h.

template<typename TSample >

typedef SmartPointer< Self > itk::Statistics::MembershipSample< TSample >::Pointer

Definition at line 62 of file itkMembershipSample.h.

template<typename TSample >

typedef SampleType::ConstPointer itk::Statistics::MembershipSample< TSample >::SampleConstPointer

Definition at line 76 of file itkMembershipSample.h.

template<typename TSample >

typedef TSample itk::Statistics::MembershipSample< TSample >::SampleType

Typedefs for Measurement vector, measurement, Instance Identifier, frequency, size, size element value from the template argument TSample

Definition at line 67 of file itkMembershipSample.h.

template<typename TSample >

typedef MembershipSample itk::Statistics::MembershipSample< TSample >::Self

Standard class typedefs.

Definition at line 60 of file itkMembershipSample.h.

template<typename TSample >

typedef DataObject itk::Statistics::MembershipSample< TSample >::Superclass

Definition at line 61 of file itkMembershipSample.h.

template<typename TSample >

typedef SampleType::TotalAbsoluteFrequencyType itk::Statistics::MembershipSample< TSample >::TotalAbsoluteFrequencyType

Definition at line 79 of file itkMembershipSample.h.

template<typename TSample >

typedef std::vector< ClassLabelType > itk::Statistics::MembershipSample< TSample >::UniqueClassLabelsType

vector of unique class labels that will be used for mapping internal continuous class label with real class labels

Definition at line 84 of file itkMembershipSample.h.

Constructor & Destructor Documentation

template<typename TSample >

itk::Statistics::MembershipSample< TSample >::MembershipSample ( )

protected

template<typename TSample >

virtual itk::Statistics::MembershipSample< TSample >::~MembershipSample ( )

inlineprotectedvirtual

Definition at line 292 of file itkMembershipSample.h.

template<typename TSample >

itk::Statistics::MembershipSample< TSample >::MembershipSample ( const Self & )

private

Member Function Documentation

template<typename TSample >

void itk::Statistics::MembershipSample< TSample >::AddInstance	(	const ClassLabelType &	classLabel,
		const InstanceIdentifier &	id
	)

Adds an instance from the source sample to this container. The first argument is the class label for that instance. The second argument is the instance identifier from the source identifier that is going to be included this container.

template<typename TSample >

Iterator itk::Statistics::MembershipSample< TSample >::Begin ( void )

inline

This method returns an iterator to the beginning of the measurement vectors

Definition at line 260 of file itkMembershipSample.h.

template<typename TSample >

ConstIterator itk::Statistics::MembershipSample< TSample >::Begin ( void ) const

inline

Definition at line 276 of file itkMembershipSample.h.

template<typename TSample >

virtual::itk::LightObject::Pointer itk::Statistics::MembershipSample< TSample >::CreateAnother ( void ) const

virtual

Standard macros

Reimplemented from itk::Object.

template<typename TSample >

Iterator itk::Statistics::MembershipSample< TSample >::End ( void )

inline

This method returns an iterator to the beginning of the measurement vectors

Definition at line 269 of file itkMembershipSample.h.

References itk::Statistics::MembershipSample< TSample >::m_Sample.

template<typename TSample >

ConstIterator itk::Statistics::MembershipSample< TSample >::End ( void ) const

inline

Definition at line 283 of file itkMembershipSample.h.

References itk::Statistics::MembershipSample< TSample >::m_Sample.

template<typename TSample >

unsigned int itk::Statistics::MembershipSample< TSample >::GetClassLabel ( const InstanceIdentifier & id ) const

Gets the class label for the instance that has the instance identifier, id.

Referenced by itk::Statistics::MembershipSample< TSample >::ConstIterator::GetClassLabel().

template<typename TSample >

const ClassLabelHolderType itk::Statistics::MembershipSample< TSample >::GetClassLabelHolder ( ) const

Gets the class labels that corresponding to the each instance in this container.

template<typename TSample >

const ClassSampleType* itk::Statistics::MembershipSample< TSample >::GetClassSample ( const ClassLabelType & classLabel ) const

Gets the Subsample that includes only the instances that belong to the classLabel. If classLabel does not exist, NULL is returned.

template<typename TSample >

AbsoluteFrequencyType itk::Statistics::MembershipSample< TSample >::GetFrequency ( const InstanceIdentifier & id ) const

returns the frequency of the instance which is identified by the 'id'

template<typename TSample >

int itk::Statistics::MembershipSample< TSample >::GetInternalClassLabel ( const ClassLabelType classLabel ) const

private

Gets the internal continuous class label from the class labels that are used for AddInstance method.

template<typename TSample >

MeasurementType itk::Statistics::MembershipSample< TSample >::GetMeasurement	(	const InstanceIdentifier &	id,
		const unsigned int &	dimension
	)

returns the measurement element which is the 'n'-th element in the 'd' dimension of the measurement vector

template<typename TSample >

const MeasurementVectorType& itk::Statistics::MembershipSample< TSample >::GetMeasurementVector ( const InstanceIdentifier & id ) const

retunrs the measurement of the instance which is identified by the 'id'

template<typename TSample >

virtual const char* itk::Statistics::MembershipSample< TSample >::GetNameOfClass ( ) const

virtual

Standard macros

Reimplemented from itk::DataObject.

template<typename TSample >

virtual unsigned int itk::Statistics::MembershipSample< TSample >::GetNumberOfClasses ( ) const

virtual

Gets the number of classes (class labels)

template<typename TSample >

virtual const SampleType* itk::Statistics::MembershipSample< TSample >::GetSample ( ) const

virtual

Set/Get the actual sample data

template<typename TSample >

TotalAbsoluteFrequencyType itk::Statistics::MembershipSample< TSample >::GetTotalFrequency ( ) const

returns the total frequency for the 'd' dimension

template<typename TSample >

virtual void itk::Statistics::MembershipSample< TSample >::Graft ( const DataObject * thatObject )

virtual

Method to graft another sample

Reimplemented from itk::DataObject.

template<typename TSample >

static Pointer itk::Statistics::MembershipSample< TSample >::New ( )

static

Standard macros

template<typename TSample >

void itk::Statistics::MembershipSample< TSample >::operator= ( const Self & )

private

template<typename TSample >

virtual void itk::Statistics::MembershipSample< TSample >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::DataObject.

template<typename TSample >

void itk::Statistics::MembershipSample< TSample >::SetNumberOfClasses ( unsigned int numberOfClasses )

Sets the number of classes (class labels)

template<typename TSample >

virtual void itk::Statistics::MembershipSample< TSample >::SetSample ( const SampleType * _arg )

virtual

Set/Get the actual sample data

Member Data Documentation

template<typename TSample >

ClassLabelHolderType itk::Statistics::MembershipSample< TSample >::m_ClassLabelHolder

private

Definition at line 304 of file itkMembershipSample.h.

template<typename TSample >

std::vector< ClassSamplePointer > itk::Statistics::MembershipSample< TSample >::m_ClassSamples

private

Definition at line 305 of file itkMembershipSample.h.

template<typename TSample >

unsigned int itk::Statistics::MembershipSample< TSample >::m_NumberOfClasses

private

Definition at line 307 of file itkMembershipSample.h.

template<typename TSample >

SampleConstPointer itk::Statistics::MembershipSample< TSample >::m_Sample

private

Definition at line 306 of file itkMembershipSample.h.

Referenced by itk::Statistics::MembershipSample< TSample >::End().

template<typename TSample >

UniqueClassLabelsType itk::Statistics::MembershipSample< TSample >::m_UniqueClassLabels

private

Definition at line 303 of file itkMembershipSample.h.

The documentation for this class was generated from the following file:

itkMembershipSample.h

Detailed Description

template<typename TSample> class itk::Statistics::MembershipSample< TSample >

Classes

Public Types

Public Member Functions

Protected Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<typename TSample>
class itk::Statistics::MembershipSample< TSample >