itk::Statistics::SampleClassifierFilter< TSample > Class Template Reference

#include <itkSampleClassifierFilter.h>

Inheritance diagram for itk::Statistics::SampleClassifierFilter< TSample >:

Collaboration diagram for itk::Statistics::SampleClassifierFilter< TSample >:

Detailed Description

template<typename TSample>
class itk::Statistics::SampleClassifierFilter< TSample >

Sample classification class.

This filter takes as input a Sample and produces as output a classification in the form of a MembershipSample object.

Examples:

Statistics/BayesianPluginClassifier.cxx, and Statistics/KdTreeBasedKMeansClustering.cxx.

Definition at line 44 of file itkSampleClassifierFilter.h.

Public Types
typedef IdentifierType	ClassLabelType
typedef ClassLabelVectorObjectType::Pointer	ClassLabelVectorObjectPointer
typedef SimpleDataObjectDecorator < ClassLabelVectorType >	ClassLabelVectorObjectType
typedef std::vector < ClassLabelType >	ClassLabelVectorType
typedef SmartPointer< const Self >	ConstPointer
typedef DecisionRuleType::ConstPointer	DecisionRulePointer
typedef DecisionRule	DecisionRuleType
typedef SampleType::MeasurementType	MeasurementType
typedef SampleType::MeasurementVectorType	MeasurementVectorType
typedef MembershipFunctionType::ConstPointer	MembershipFunctionPointer
typedef SimpleDataObjectDecorator < MembershipFunctionsWeightsArrayType >	MembershipFunctionsWeightsArrayObjectType
typedef MembershipFunctionsWeightsArrayObjectType::Pointer	MembershipFunctionsWeightsArrayPointer
typedef Array< double >	MembershipFunctionsWeightsArrayType
typedef MembershipFunctionBase < MeasurementVectorType >	MembershipFunctionType
typedef MembershipFunctionVectorObjectType::Pointer	MembershipFunctionVectorObjectPointer
typedef SimpleDataObjectDecorator < MembershipFunctionVectorType >	MembershipFunctionVectorObjectType
typedef std::vector < MembershipFunctionPointer >	MembershipFunctionVectorType
typedef MembershipSampleType::Pointer	MembershipSampleObjectPointer
typedef MembershipSample < SampleType >	MembershipSampleType
typedef SmartPointer< Self >	Pointer
typedef TSample	SampleType
typedef SampleClassifierFilter	Self
typedef ProcessObject	Superclass
Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer
typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType
typedef std::vector < DataObjectIdentifierType >	NameArray
typedef SmartPointer< Self >	Pointer
typedef ProcessObject	Self
typedef Object	Superclass
Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef Object	Self
typedef LightObject	Superclass
Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightObject	Self

Public Member Functions
const SampleType *	GetInput () const
const MembershipSampleType *	GetOutput () const
void	SetClassLabels (const ClassLabelVectorObjectType *classLabels)
void	SetInput (const SampleType *sample)
void	SetMembershipFunctions (const MembershipFunctionVectorObjectType *membershipFunctions)
void	SetMembershipFunctionsWeightsArray (const MembershipFunctionsWeightsArrayObjectType *weightsArray)
virtual void	SetNumberOfClasses (unsigned int _arg)
virtual unsigned int	GetNumberOfClasses () const
virtual void	SetDecisionRule (const DecisionRuleType *_arg)
virtual const DecisionRuleType *	GetDecisionRule () const
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData () const
NameArray	GetInputNames () const
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
virtual const float &	GetProgress () const
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float progress)
DataObjectPointerArray	GetInputs ()
DataObjectPointerArray	GetOutputs ()
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
void	SetProgress (float progress)
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag () const
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads () const
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const ITK_OVERRIDE
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int) ITK_OVERRIDE
virtual void	UnRegister () const ITK_OVERRIDE
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Protected Member Functions
virtual void	GenerateData () ITK_OVERRIDE
void	operator= (const Self &)
virtual void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
	SampleClassifierFilter ()
	SampleClassifierFilter (const Self &)
virtual	~SampleClassifierFilter ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateInputRequestedRegion ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const
bool	IsIndexedInputName (const DataObjectIdentifierType &) const
bool	IsIndexedOutputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const
DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
virtual void	VerifyInputInformation ()
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
DataObject *	GetInput (DataObjectPointerArraySizeType idx)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
virtual void	PushBackInput (const DataObject *input)
virtual void	PopBackInput ()
virtual void	PushFrontInput (const DataObject *input)
virtual void	PopFrontInput ()
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryInputName (void) const
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const
bool	AddRequiredInputName (const DataObjectIdentifierType &)
bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
void	SetRequiredInputNames (const NameArray &)
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryOutputName (void) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Attributes
DecisionRulePointer	m_DecisionRule
unsigned int	m_NumberOfClasses
virtual const char *	GetNameOfClass () const
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
static Pointer	New ()
typedef ProcessObject::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
virtual DataObjectPointer	MakeOutput (DataObjectPointerArraySizeType idx) ITK_OVERRIDE

Additional Inherited Members
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()
Protected Types inherited from itk::LightObject
typedef int	InternalReferenceCountType
Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime
bool	m_Updating
Protected Attributes inherited from itk::LightObject
InternalReferenceCountType	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock

Member Typedef Documentation

template<typename TSample >

typedef IdentifierType itk::Statistics::SampleClassifierFilter< TSample >::ClassLabelType

Definition at line 87 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef ClassLabelVectorObjectType::Pointer itk::Statistics::SampleClassifierFilter< TSample >::ClassLabelVectorObjectPointer

Definition at line 91 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef SimpleDataObjectDecorator< ClassLabelVectorType > itk::Statistics::SampleClassifierFilter< TSample >::ClassLabelVectorObjectType

Definition at line 90 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef std::vector< ClassLabelType > itk::Statistics::SampleClassifierFilter< TSample >::ClassLabelVectorType

Definition at line 88 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef SmartPointer< const Self > itk::Statistics::SampleClassifierFilter< TSample >::ConstPointer

Definition at line 52 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef ProcessObject::DataObjectPointerArraySizeType itk::Statistics::SampleClassifierFilter< TSample >::DataObjectPointerArraySizeType

protected

Make a DataObject of the correct type to used as the specified output. This method is automatically called when DataObject::DisconnectPipeline() is called.

See Also

ProcessObject

Definition at line 148 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef DecisionRuleType::ConstPointer itk::Statistics::SampleClassifierFilter< TSample >::DecisionRulePointer

Definition at line 95 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef DecisionRule itk::Statistics::SampleClassifierFilter< TSample >::DecisionRuleType

type of the decision rule

Definition at line 94 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef SampleType::MeasurementType itk::Statistics::SampleClassifierFilter< TSample >::MeasurementType

typedefs from SampleType object

Definition at line 67 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef SampleType::MeasurementVectorType itk::Statistics::SampleClassifierFilter< TSample >::MeasurementVectorType

Definition at line 68 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef MembershipFunctionType::ConstPointer itk::Statistics::SampleClassifierFilter< TSample >::MembershipFunctionPointer

Definition at line 72 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef SimpleDataObjectDecorator< MembershipFunctionsWeightsArrayType > itk::Statistics::SampleClassifierFilter< TSample >::MembershipFunctionsWeightsArrayObjectType

Definition at line 83 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef MembershipFunctionsWeightsArrayObjectType::Pointer itk::Statistics::SampleClassifierFilter< TSample >::MembershipFunctionsWeightsArrayPointer

Definition at line 85 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef Array< double > itk::Statistics::SampleClassifierFilter< TSample >::MembershipFunctionsWeightsArrayType

typedef for membership functions weight proprtion

Definition at line 80 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef MembershipFunctionBase< MeasurementVectorType > itk::Statistics::SampleClassifierFilter< TSample >::MembershipFunctionType

typedef for the MembershipFunction

Definition at line 71 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef MembershipFunctionVectorObjectType::Pointer itk::Statistics::SampleClassifierFilter< TSample >::MembershipFunctionVectorObjectPointer

Definition at line 77 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef SimpleDataObjectDecorator< MembershipFunctionVectorType > itk::Statistics::SampleClassifierFilter< TSample >::MembershipFunctionVectorObjectType

Definition at line 75 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef std::vector< MembershipFunctionPointer > itk::Statistics::SampleClassifierFilter< TSample >::MembershipFunctionVectorType

Definition at line 73 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef MembershipSampleType::Pointer itk::Statistics::SampleClassifierFilter< TSample >::MembershipSampleObjectPointer

Definition at line 64 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef MembershipSample< SampleType > itk::Statistics::SampleClassifierFilter< TSample >::MembershipSampleType

typedefs Output type

Definition at line 63 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef SmartPointer< Self > itk::Statistics::SampleClassifierFilter< TSample >::Pointer

Definition at line 51 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef TSample itk::Statistics::SampleClassifierFilter< TSample >::SampleType

Type of the input Sample

Definition at line 56 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef SampleClassifierFilter itk::Statistics::SampleClassifierFilter< TSample >::Self

Standard class typedef

Definition at line 49 of file itkSampleClassifierFilter.h.

template<typename TSample >

typedef ProcessObject itk::Statistics::SampleClassifierFilter< TSample >::Superclass

Definition at line 50 of file itkSampleClassifierFilter.h.

Constructor & Destructor Documentation

template<typename TSample >

itk::Statistics::SampleClassifierFilter< TSample >::SampleClassifierFilter ( )

protected

template<typename TSample >

virtual itk::Statistics::SampleClassifierFilter< TSample >::~SampleClassifierFilter ( )

inlineprotectedvirtual

Definition at line 133 of file itkSampleClassifierFilter.h.

template<typename TSample >

itk::Statistics::SampleClassifierFilter< TSample >::SampleClassifierFilter ( const Self &  )

protected

Member Function Documentation

template<typename TSample >

virtual::itk::LightObject::Pointer itk::Statistics::SampleClassifierFilter< TSample >::CreateAnother ( void  ) const

virtual

Standard macros

Reimplemented from itk::Object.

template<typename TSample >

virtual void itk::Statistics::SampleClassifierFilter< TSample >::GenerateData ( )

protectedvirtual

Starts the classification process

Reimplemented from itk::ProcessObject.

template<typename TSample >

virtual const DecisionRuleType* itk::Statistics::SampleClassifierFilter< TSample >::GetDecisionRule ( ) const

virtual

Set/Get the decision rule.

template<typename TSample >

const SampleType* itk::Statistics::SampleClassifierFilter< TSample >::GetInput

(

)

const

template<typename TSample >

virtual const char* itk::Statistics::SampleClassifierFilter< TSample >::GetNameOfClass ( ) const

virtual

Standard macros

Reimplemented from itk::ProcessObject.

template<typename TSample >

virtual unsigned int itk::Statistics::SampleClassifierFilter< TSample >::GetNumberOfClasses ( ) const

virtual

Number of classes. This must match the number of labels and membership functions provided by the user, otherwise an exception will be thrown at

template<typename TSample >

const MembershipSampleType* itk::Statistics::SampleClassifierFilter< TSample >::GetOutput

(

)

const

Returns the classification result

template<typename TSample >

virtual DataObjectPointer itk::Statistics::SampleClassifierFilter< TSample >::MakeOutput ( DataObjectPointerArraySizeType  idx )

protectedvirtual

Make a DataObject of the correct type to used as the specified output. This method is automatically called when DataObject::DisconnectPipeline() is called.

See Also

ProcessObject

Reimplemented from itk::ProcessObject.

template<typename TSample >

static Pointer itk::Statistics::SampleClassifierFilter< TSample >::New ( )

static

Standard macros

template<typename TSample >

void itk::Statistics::SampleClassifierFilter< TSample >::operator= ( const Self &  )

protected

template<typename TSample >

virtual void itk::Statistics::SampleClassifierFilter< TSample >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ProcessObject.

template<typename TSample >

void itk::Statistics::SampleClassifierFilter< TSample >::SetClassLabels

(

const ClassLabelVectorObjectType *

classLabels

)

Sets input vector of class labels. The length of this vector must match the number of classes, otherwise an exception will be thrown at run time.

template<typename TSample >

virtual void itk::Statistics::SampleClassifierFilter< TSample >::SetDecisionRule ( const DecisionRuleType *  _arg )

virtual

Set/Get the decision rule.

template<typename TSample >

void itk::Statistics::SampleClassifierFilter< TSample >::SetInput

(

const SampleType *

sample

)

template<typename TSample >

void itk::Statistics::SampleClassifierFilter< TSample >::SetMembershipFunctions

(

const MembershipFunctionVectorObjectType *

membershipFunctions

)

Sets input vector of membership functions. The length of this vector must match the number of classes, otherwise an exception will be thrown at run time.

template<typename TSample >

void itk::Statistics::SampleClassifierFilter< TSample >::SetMembershipFunctionsWeightsArray

(

const MembershipFunctionsWeightsArrayObjectType *

weightsArray

)

Sets array of weights for the membership functions

template<typename TSample >

virtual void itk::Statistics::SampleClassifierFilter< TSample >::SetNumberOfClasses ( unsigned int  _arg )

virtual

Number of classes. This must match the number of labels and membership functions provided by the user, otherwise an exception will be thrown at

Member Data Documentation

template<typename TSample >

DecisionRulePointer itk::Statistics::SampleClassifierFilter< TSample >::m_DecisionRule

private

Decision Rule

Definition at line 158 of file itkSampleClassifierFilter.h.

template<typename TSample >

unsigned int itk::Statistics::SampleClassifierFilter< TSample >::m_NumberOfClasses

private

Definition at line 155 of file itkSampleClassifierFilter.h.

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The documentation for this class was generated from the following file:

• itkSampleClassifierFilter.h