#include <itkMultiphaseFiniteDifferenceImageFilter.h>

Inheritance diagram for itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >:

Collaboration diagram for itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >:

Detailed Description

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>
class itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >

The Finite Difference Solver Hierarchy

This is an alternate version of the ITK finite difference solver (FDS) framework, supporting the solution of multiple functions, simultaneously. The FDS framework is a set of classes for creating filters to solve partial differential equations on images using an iterative, finite difference update scheme.

: The high-level algorithm implemented by the framework can be described by the following pseudocode.

*  WHILE NOT convergence:
*     FOR ALL pixels i
*      FOR ALL functions f
*      min_time_step = min(min_time_step, calculate_change(f, i))
*      FOR ALL functions f
*          update(f, i, time_step)
* 

: The following equation describes update at pixel on discrete image :

: $u_{\mathbf{i}}^{n+1}=u^n_{\mathbf{i}}+\Delta u^n_{\mathbf{i}}\Delta t$

Component objects: The FDS hierarchy is comprised of two component object types, variations of which are designed to be plugged together to create filters for different applications. At the process level are the ``solver'' objects, which are subclasses of MultiphaseFiniteDifferenceImageFilter. Solver objects are filters that take image inputs and produce image outputs. Solver objects require a ``finite difference function'' object to perform the calculation at each image pixel during iteration. These specialized function objects are subclasses of FiniteDifferenceFunction. FiniteDifferenceFunctions take a neighborhood of pixels as input (in the form of an itk::NeighborhoodIterator) and produce a scalar valued result.

: Filters for different applications are created by defining a function object to handle the numerical calculations and choosing (or creating) a solver object that reflects the requirements and constraints of the application. For example, anisotropic diffusion filters are created by plugging anisotropic diffusion functions into the DenseFiniteDifferenceImageFilter2. The separation between function object and solver object allows us to create, for example, sparse-field, dense-field, and narrow-band implementations of a level-set surface evolution filter can all be constructed by plugging the same function object into three different, specialized solvers.

Creating new filters in this hierarchy: The procedure for creating a filter within the FDS hierarchy is to identify all the virtual methods that need to be defined for your particular application. In the simplest case, a filter needs only to instantiate a specific function object and define some halting criteria. For more complicated applications, you may need to define a specialized type of iteration scheme or updating procedure in a higher-level solver object.

: Some simple examples are the specific subclasses of AnisotropicDiffusionImageFilter. The leaves of the anisotropic diffusion filter tree only define the function object they use for their particular flavor of diffusion. See CurvatureAnisotropicDiffusionImageFilter and GradientAnisotropicDiffusionImageFilter for details.

FiniteDifferenceImageFilter2: This class defines the generic solver API at the top level of the FDS framework. FiniteDifferenceImageFilter2 is an abstract class that implements the generic, high-level algorithm (described above).

Inputs and Outputs: This filter is an Image to Image filter. Depending on the specific subclass implementation, finite difference image filters may process a variety of image types. The input to the filter is the initial value of and the output of the filter is the solution to the p.d.e.

How to use this class: GenerateData() relies on several virtual methods that must be defined by a subclass. Specifically: AllocateUpdateBuffer ApplyUpdate CalculateChange and Halt. To create a finite difference solver, implement a subclass to define these methods.

: Note that there is no fixed container type for the buffer used to hold the update $\Delta$ . The container might be another image, or simply a list of values. AllocateUpdateBuffer is responsible for creating the $\Delta$ container. CalculateChange populates this buffer and ApplyUpdate adds the buffer values to the output image (solution). The boolean Halt() (or ThreadedHalt) method returns a true value to stop iteration.

Based on the paper:

   "An active contour model without edges"
    T. Chan and L. Vese.
    In Scale-Space Theories in Computer Vision, pages 141-151, 1999.

Author: Mosaliganti K., Smith B., Gelas A., Gouaillard A., Megason S.

This code was taken from the Insight Journal paper:

"Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes"
http://www.insight-journal.org/browse/publication/642
http://hdl.handle.net/10380/3055

That is based on the papers:

"Level Set Segmentation: Active Contours without edge"
http://www.insight-journal.org/browse/publication/322
http://hdl.handle.net/1926/1532

and

"Level set segmentation using coupled active surfaces"
http://www.insight-journal.org/browse/publication/323
http://hdl.handle.net/1926/1533

See Also: DenseFiniteDifferenceImageFilter2

Definition at line 165 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Public Types
typedef Vector< float, itkGetStaticConstMacro(ImageDimension) >	CentroidVectorType

typedef SmartPointer< const Self >	ConstPointer

typedef FeatureImageType::Pointer	FeatureImagePointer

typedef TFeatureImage	FeatureImageType

typedef FeatureImageType::PixelType	FeaturePixelType

typedef FeatureImageType::PointType	FeaturePointType

typedef FeatureImageType::RegionType	FeatureRegionType

typedef FeatureImageType::SizeType	FeatureSizeType

typedef FeatureImageType::SpacingType	FeatureSpacingType

typedef FiniteDifferenceFunctionType::Pointer	FiniteDifferenceFunctionPointer

typedef TFiniteDifferenceFunction	FiniteDifferenceFunctionType

typedef TIdCell	IdCellType

typedef InputPointType::CoordRepType	InputCoordRepType

typedef InputImageType::Pointer	InputImagePointer

typedef TInputImage	InputImageType

typedef InputImageType::IndexType	InputIndexType

typedef InputIndexType::IndexValueType	InputIndexValueType

typedef InputImageType::OffsetValueType	InputOffsetValueType

typedef InputImageType::PixelType	InputPixelType

typedef InputImageType::PointType	InputPointType

typedef InputImageType::RegionType	InputRegionType

typedef InputImageType::SizeType	InputSizeType

typedef InputSizeType::SizeValueType	InputSizeValueType

typedef InputImageType::SpacingType	InputSpacingType

typedef KdTreeGeneratorType::Pointer	KdTreeGeneratorPointer

typedef Statistics::KdTreeGenerator < SampleType >	KdTreeGeneratorType

typedef KdTreeType::Pointer	KdTreePointer

typedef KdTreeGeneratorType::KdTreeType	KdTreeType

typedef OutputImageType::Pointer	OutputImagePointer

typedef TOutputImage	OutputImageType

typedef OutputImageType::IndexType	OutputIndexType

typedef OutputImageType::IndexValueType	OutputIndexValueType

typedef OutputImageType::PixelType	OutputPixelType

typedef OutputImageType::RegionType	OutputRegionType

typedef OutputImageType::SizeType	OutputSizeType

typedef OutputImageType::SizeValueType	OutputSizeValueType

typedef SmartPointer< Self >	Pointer

typedef FiniteDifferenceFunctionType::RadiusType	RadiusType

typedef Statistics::ListSample < CentroidVectorType >	SampleType

typedef MultiphaseFiniteDifferenceImageFilter	Self

typedef InPlaceImageFilter < TFeatureImage, TOutputImage >	Superclass

typedef FiniteDifferenceFunctionType::TimeStepType	TimeStepType

typedef std::vector< TimeStepType >	TimeStepVectorType

typedef std::vector< IdCellType >	VectorIdCellType

Public Types inherited from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef TFeatureImage	InputImageType

typedef Superclass::OutputImagePixelType	OutputImagePixelType

typedef Superclass::OutputImagePointer	OutputImagePointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef Superclass::OutputImageType	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef InPlaceImageFilter	Self

typedef ImageToImageFilter < TFeatureImage, TOutputImage >	Superclass

Public Types inherited from itk::ImageToImageFilter< TFeatureImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef TFeatureImage	InputImageType

typedef Superclass::OutputImagePixelType	OutputImagePixelType

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef SmartPointer< Self >	Pointer

typedef ImageToImageFilter	Self

typedef ImageSource< TOutputImage >	Superclass

Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType

typedef OutputImageType::PixelType	OutputImagePixelType

typedef OutputImageType::Pointer	OutputImagePointer

typedef OutputImageType::RegionType	OutputImageRegionType

typedef TOutputImage	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef ImageSource	Self

typedef ProcessObject	Superclass

Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer

typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef std::vector < DataObjectPointer >	DataObjectPointerArray

typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType

typedef std::vector < DataObjectIdentifierType >	NameArray

typedef SmartPointer< Self >	Pointer

typedef ProcessObject	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual const unsigned int &	GetElapsedIterations () const

InputImagePointer	GetLevelSet (const IdCellType &i)

virtual const char *	GetNameOfClass () const

virtual void	SetElapsedIterations (unsigned int _arg)

void	SetFunctionCount (const IdCellType &n)

void	SetKdTree (KdTreeType *kdtree)

void	SetLevelSet (const IdCellType &i, const InputImageType *levelSet)

void	SetLookup (VectorIdCellType lookup)


virtual const FiniteDifferenceFunctionPointer	GetDifferenceFunction (const IdCellType &functionIndex) const


virtual void	SetDifferenceFunction (const IdCellType &functionIndex, FiniteDifferenceFunctionPointer function)


virtual void	SetNumberOfIterations (unsigned int _arg)

virtual const unsigned int &	GetNumberOfIterations () const


virtual void	SetUseImageSpacing (bool _arg)

virtual void	UseImageSpacingOn ()

virtual void	UseImageSpacingOff ()

virtual const bool &	GetUseImageSpacing () const


virtual void	SetMaximumRMSError (double _arg)

virtual const double &	GetMaximumRMSError () const


virtual void	SetRMSChange (double _arg)

virtual const double &	GetRMSChange () const


virtual void	SetInitializedState (bool _arg)

virtual const bool &	GetInitializedState () const

virtual void	InitializedStateOn ()

virtual void	InitializedStateOff ()


virtual void	SetManualReinitialization (bool _arg)

virtual const bool &	GetManualReinitialization () const

virtual void	ManualReinitializationOn ()

virtual void	ManualReinitializationOff ()

Public Member Functions inherited from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >
virtual bool	CanRunInPlace () const

virtual void	SetInPlace (bool _arg)

virtual bool	GetInPlace () const

virtual void	InPlaceOn ()

virtual void	InPlaceOff ()

Public Member Functions inherited from itk::ImageToImageFilter< TFeatureImage, TOutputImage >
const InputImageType *	GetInput () const

const InputImageType *	GetInput (unsigned int idx) const

virtual void	PopBackInput () override

virtual void	PopFrontInput () override

virtual void	PushBackInput (const InputImageType *image)

virtual void	PushFrontInput (const InputImageType *image)

virtual void	SetInput (const InputImageType *image)

virtual void	SetInput (unsigned int, const TFeatureImage *image)

virtual void	SetCoordinateTolerance (double _arg)

virtual double	GetCoordinateTolerance () const

virtual void	SetDirectionTolerance (double _arg)

virtual double	GetDirectionTolerance () const

Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)

virtual void	GraftNthOutput (unsigned int idx, DataObject *output)

virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)

OutputImageType *	GetOutput ()

const OutputImageType *	GetOutput () const

virtual void	GraftOutput (DataObject *output)

virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override

virtual ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual void	EnlargeOutputRequestedRegion (DataObject *)

virtual const bool &	GetAbortGenerateData () const

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

NameArray	GetInputNames () const

DataObjectPointerArray	GetInputs ()

MultiThreader *	GetMultiThreader () const

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

DataObjectPointerArray	GetOutputs ()

virtual const float &	GetProgress () const

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float progress)

void	SetProgress (float progress)

virtual void	SetReleaseDataFlag (bool flag)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag () const

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	SetNumberOfThreads (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfThreads () const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual LightObject::Pointer	CreateAnother () const override

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) override

virtual void	UnRegister () const noexceptoverride

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Attributes
static const unsigned int	ImageDimension = TOutputImage::ImageDimension

Static Public Attributes inherited from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >
static const unsigned int	InputImageDimension

static const unsigned int	OutputImageDimension

Static Public Attributes inherited from itk::ImageToImageFilter< TFeatureImage, TOutputImage >
static const unsigned int	InputImageDimension

static const unsigned int	OutputImageDimension

Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Member Functions
virtual void	AllocateUpdateBuffer ()=0

virtual void	ApplyUpdate (TimeStepType dt)=0

virtual TimeStepType	CalculateChange ()=0

virtual void	CopyInputToOutput ()=0

virtual void	GenerateData () override

virtual void	GenerateInputRequestedRegion () override

virtual bool	Halt ()

virtual void	Initialize ()

	MultiphaseFiniteDifferenceImageFilter ()

virtual void	PostProcessOutput ()

void	PrintSelf (std::ostream &os, Indent indent) const override

TimeStepType	ResolveTimeStep (const TimeStepVectorType &timeStepList, const std::vector< bool > &valid)

virtual bool	ThreadedHalt (void *)

	~MultiphaseFiniteDifferenceImageFilter ()


virtual void	InitializeIteration ()

Protected Member Functions inherited from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >
virtual void	AllocateOutputs () override

virtual bool	GetRunningInPlace () const

	InPlaceImageFilter ()

virtual void	ReleaseInputs () override

	~InPlaceImageFilter ()

Protected Member Functions inherited from itk::ImageToImageFilter< TFeatureImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)

virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)

	ImageToImageFilter ()

virtual void	VerifyInputInformation () override

	~ImageToImageFilter ()

void	PushBackInput (const DataObject *input) override

void	PushFrontInput (const DataObject *input) override

Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()

virtual void	BeforeThreadedGenerateData ()

virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const

	ImageSource ()

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)

virtual	~ImageSource ()

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

virtual void	AddOutput (DataObject *output)

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateOutputInformation ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))

	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))

	itkLegacyMacro (virtual void RemoveInput(DataObject *input))

	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)

virtual void	SetPrimaryInput (DataObject *input)

virtual void	SetPrimaryOutput (DataObject *output)

void	SetRequiredInputNames (const NameArray &)

virtual void	VerifyPreconditions ()

	~ProcessObject ()

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName (void) const

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName (void) const

DataObject *	GetOutput (DataObjectPointerArraySizeType idx)

const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
std::vector < FiniteDifferenceFunctionPointer >	m_DifferenceFunctions

unsigned int	m_ElapsedIterations

IdCellType	m_FunctionCount

KdTreePointer	m_KdTree

std::vector< InputImagePointer >	m_LevelSet

VectorIdCellType	m_Lookup

double	m_MaximumRMSError

unsigned int	m_NumberOfIterations

double	m_RMSChange

bool	m_UseImageSpacing

Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime

bool	m_Updating

Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Private Member Functions
	MultiphaseFiniteDifferenceImageFilter (const Self &)

void	operator= (const Self &)

Private Attributes
bool	m_InitializedState

bool	m_ManualReinitialization

Additional Inherited Members
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Protected Types inherited from itk::ImageToImageFilter< TFeatureImage, TOutputImage >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType

typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType

Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()

static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)

Member Typedef Documentation

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef Vector< float, itkGetStaticConstMacro(ImageDimension) > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::CentroidVectorType

Definition at line 226 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef SmartPointer< const Self > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::ConstPointer

Definition at line 174 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef FeatureImageType::Pointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::FeatureImagePointer

Definition at line 197 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef TFeatureImage itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::FeatureImageType

Definition at line 196 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef FeatureImageType::PixelType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::FeaturePixelType

Definition at line 202 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef FeatureImageType::PointType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::FeaturePointType

Definition at line 201 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef FeatureImageType::RegionType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::FeatureRegionType

Definition at line 198 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef FeatureImageType::SizeType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::FeatureSizeType

Definition at line 199 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef FeatureImageType::SpacingType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::FeatureSpacingType

Definition at line 200 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef FiniteDifferenceFunctionType::Pointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::FiniteDifferenceFunctionPointer

Definition at line 220 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef TFiniteDifferenceFunction itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::FiniteDifferenceFunctionType

The value type of the time step. This is distinct from PixelType because PixelType may often be a vector value, while the TimeStep is a scalar value.

Definition at line 219 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef TIdCell itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::IdCellType

Definition at line 213 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputPointType::CoordRepType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputCoordRepType

Definition at line 186 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputImageType::Pointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputImagePointer

Definition at line 184 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef TInputImage itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputImageType

Input and output image types.

Definition at line 183 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputImageType::IndexType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputIndexType

Definition at line 187 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputIndexType::IndexValueType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputIndexValueType

Definition at line 188 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputImageType::OffsetValueType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputOffsetValueType

Definition at line 194 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputImageType::PixelType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputPixelType

Definition at line 192 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputImageType::PointType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputPointType

Definition at line 185 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputImageType::RegionType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputRegionType

Definition at line 191 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputImageType::SizeType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputSizeType

Definition at line 189 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputSizeType::SizeValueType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputSizeValueType

Definition at line 190 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InputImageType::SpacingType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InputSpacingType

Definition at line 193 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef KdTreeGeneratorType::Pointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::KdTreeGeneratorPointer

Definition at line 229 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef Statistics::KdTreeGenerator< SampleType > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::KdTreeGeneratorType

Definition at line 228 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef KdTreeType::Pointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::KdTreePointer

Definition at line 231 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef KdTreeGeneratorType::KdTreeType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::KdTreeType

Definition at line 230 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef OutputImageType::Pointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::OutputImagePointer

Definition at line 205 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef TOutputImage itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::OutputImageType

Definition at line 204 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef OutputImageType::IndexType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::OutputIndexType

Definition at line 210 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef OutputImageType::IndexValueType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::OutputIndexValueType

Definition at line 211 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef OutputImageType::PixelType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::OutputPixelType

Definition at line 206 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef OutputImageType::RegionType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::OutputRegionType

Definition at line 207 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef OutputImageType::SizeType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::OutputSizeType

Definition at line 208 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef OutputImageType::SizeValueType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::OutputSizeValueType

Definition at line 209 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef SmartPointer< Self > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::Pointer

Definition at line 173 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef FiniteDifferenceFunctionType::RadiusType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::RadiusType

Definition at line 223 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef Statistics::ListSample< CentroidVectorType > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SampleType

Definition at line 227 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef MultiphaseFiniteDifferenceImageFilter itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::Self

Standard class typedefs.

Definition at line 171 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef InPlaceImageFilter< TFeatureImage, TOutputImage > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::Superclass

Definition at line 172 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef FiniteDifferenceFunctionType::TimeStepType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::TimeStepType

Definition at line 221 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef std::vector< TimeStepType > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::TimeStepVectorType

Definition at line 222 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

typedef std::vector< IdCellType > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::VectorIdCellType

Definition at line 214 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Constructor & Destructor Documentation

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::MultiphaseFiniteDifferenceImageFilter ( )

inlineprotected

Definition at line 390 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::~MultiphaseFiniteDifferenceImageFilter ( )

inlineprotected

Definition at line 404 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::MultiphaseFiniteDifferenceImageFilter ( const Self & )

private

Member Function Documentation

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::AllocateUpdateBuffer ( )

protectedpure virtual

This method allocates a temporary update container in the subclass.

Implemented in itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, and itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction >.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::ApplyUpdate ( TimeStepType dt )

protectedpure virtual

This method is defined by a subclass to apply changes to the output from an update buffer and a time step value "dt".

Parameters

dt	Time step value.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual TimeStepType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::CalculateChange ( )

protectedpure virtual

This method is defined by a subclass to populate an update buffer with changes for the pixels in the output. It returns a time step value to be used for the update.

Returns: A time step to use in updating the output with the changes calculated from this method.

Implemented in itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, and itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction >.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::CopyInputToOutput ( )

protectedpure virtual

This method can be defined in subclasses as needed to copy the input to the output. See DenseFiniteDifferenceImageFilter2 for an implementation.

Implemented in itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, and itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction >.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GenerateData ( )

overrideprotectedvirtual

This is the default, high-level algorithm for calculating finite difference solutions. It calls virtual methods in its subclasses to implement the major steps of the algorithm.

Reimplemented from itk::ImageSource< TOutputImage >.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GenerateInputRequestedRegion ( )

overrideprotectedvirtual

FiniteDifferenceImageFilter2 needs a larger input requested region than the output requested region. As such, we need to provide an implementation for GenerateInputRequestedRegion() in order to inform the pipeline execution model.

: The filter will ask for a padded region to perform its neighborhood calculations. If no such region is available, the boundaries will be handled as described in the FiniteDifferenceFunction defined by the subclass.

See Also: ProcessObject::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TFeatureImage, TOutputImage >.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual const FiniteDifferenceFunctionPointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GetDifferenceFunction ( const IdCellType & functionIndex ) const

inlinevirtual

This method returns a pointer to a FiniteDifferenceFunction object that will be used by the filter to calculate updates at image pixels.

Parameters

functionIndex Index of difference function to return.

Returns: A FiniteDifferenceObject pointer.

Definition at line 237 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual const unsigned int& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GetElapsedIterations ( ) const

virtual

Get the number of elapsed iterations of the filter.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual const bool& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GetInitializedState ( ) const

virtual

Set/Get the state of the filter.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

InputImagePointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GetLevelSet ( const IdCellType & i )

inline

Definition at line 331 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual const bool& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GetManualReinitialization ( ) const

virtual

Require the filter to be manually reinitialized (by calling SetInitializedStateOff()

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual const double& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GetMaximumRMSError ( ) const

virtual

Set/Get the maximum error allowed in the solution. This may not be defined for all solvers and its meaning may change with the application.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual const char* itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >.

Reimplemented in itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction >, itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >, and itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual const unsigned int& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GetNumberOfIterations ( ) const

virtual

Set/Get the number of iterations that the filter will run.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual const double& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GetRMSChange ( ) const

virtual

Set/Get the root mean squared change of the previous iteration. May not be used by all solvers.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual const bool& itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::GetUseImageSpacing ( ) const

virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOn.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual bool itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::Halt ( )

protectedvirtual

This method returns true when the current iterative solution of the equation has met the criteria to stop solving. Defined by a subclass.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::ThreadedHalt().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::Initialize ( void )

inlineprotectedvirtual

This method is optionally defined by a subclass and is called before the loop of iterations of calculate_change & upate. It does the global initialization, i.e. in the SparseFieldLevelSetImageFilter, initialize the list of layers.

Reimplemented in itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >, and itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >.

Definition at line 486 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InitializedStateOff ( )

virtual

Set/Get the state of the filter.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InitializedStateOn ( )

virtual

Set/Get the state of the filter.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::InitializeIteration ( )

inlineprotectedvirtual

This method is optionally defined by a subclass and is called immediately prior to each iterative CalculateChange-ApplyUpdate cycle. It can be used to set global variables needed for the next iteration (ie. average gradient magnitude of the image in anisotropic diffusion functions), or otherwise prepare for the next iteration.

Reimplemented in itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, itk::ScalarChanAndVeseSparseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData, TIdCell >, and itk::ScalarChanAndVeseDenseLevelSetImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TSharedData >.

Definition at line 494 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::ManualReinitializationOff ( )

virtual

Require the filter to be manually reinitialized (by calling SetInitializedStateOff()

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::ManualReinitializationOn ( )

virtual

Require the filter to be manually reinitialized (by calling SetInitializedStateOff()

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::operator= ( const Self & )

private

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::PostProcessOutput ( )

inlineprotectedvirtual

This method is called after the solution has been generated to allow subclasses to apply some further processing to the output.

Reimplemented in itk::MultiphaseSparseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, TIdCell >, and itk::MultiphaseDenseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction >.

Definition at line 520 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::InPlaceImageFilter< TFeatureImage, TOutputImage >.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

TimeStepType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::ResolveTimeStep	(	const TimeStepVectorType &	timeStepList,
		const std::vector< bool > &	valid
	)

inlineprotected

Virtual method for resolving a single time step from a set of time steps returned from processing threads.

Returns: Time step (dt) for the iteration update based on a list of time steps generated from the threaded calculated change method (one for each region processed).

Parameters

timeStepList	The set of time changes compiled from all the threaded calls to ThreadedGenerateData.
valid	The set of flags indicating which of "list" elements are valid

The default is to return the minimum value in the list.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetDifferenceFunction	(	const IdCellType &	functionIndex,
		FiniteDifferenceFunctionPointer	function
	)

inlinevirtual

This method sets the pointer to a FiniteDifferenceFunction object that will be used by the filter to calculate updates at image pixels.

Parameters

functionIndex	Index of difference function to set.
function	Pointer to difference function to set.

Definition at line 255 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetElapsedIterations ( unsigned int _arg )

virtual

Set the number of elapsed iterations of the filter.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetFunctionCount ( const IdCellType & n )

inline

Definition at line 354 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetInitializedState ( bool _arg )

virtual

Set/Get the state of the filter.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetKdTree ( KdTreeType * kdtree )

inline

Definition at line 349 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetLevelSet	(	const IdCellType &	i,
		const InputImageType *	levelSet
	)

inline

Definition at line 308 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetLookup ( VectorIdCellType lookup )

inline

Definition at line 344 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetManualReinitialization ( bool _arg )

virtual

Require the filter to be manually reinitialized (by calling SetInitializedStateOff()

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetMaximumRMSError ( double _arg )

virtual

Set/Get the maximum error allowed in the solution. This may not be defined for all solvers and its meaning may change with the application.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetNumberOfIterations ( unsigned int _arg )

virtual

Set/Get the number of iterations that the filter will run.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetRMSChange ( double _arg )

virtual

Set/Get the root mean squared change of the previous iteration. May not be used by all solvers.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::SetUseImageSpacing ( bool _arg )

virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOn.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual bool itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::ThreadedHalt ( void * )

inlineprotectedvirtual

This method is similar to Halt(), and its default implementation in this class is simply to call Halt(). However, this method takes as a parameter a void pointer to the MultiThreader::ThreadInfoStruct structure. If you override this method instead of overriding Halt, you will be able to get the current thread ID and handle the Halt method accordingly. This is useful if you are doing a lot of processing in Halt that you don't want parallelized. Notice that ThreadedHalt is only called by the multithreaded filters, so you still should implement Halt, just in case a non-threaded filter is used.

Definition at line 476 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::UseImageSpacingOff ( )

virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOn.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

virtual void itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::UseImageSpacingOn ( )

virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOn.

Member Data Documentation

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

const unsigned int itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::ImageDimension = TOutputImage::ImageDimension

static

Dimensionality of input and output data is assumed to be the same.

Definition at line 180 of file itkMultiphaseFiniteDifferenceImageFilter.h.

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

std::vector< FiniteDifferenceFunctionPointer > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_DifferenceFunctions

protected

The function that will be used in calculating updates for each pixel.

Definition at line 417 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::GetDifferenceFunction(), itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::InitializeIteration(), itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::SetDifferenceFunction(), and itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::SetFunctionCount().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

unsigned int itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_ElapsedIterations

protected

Definition at line 411 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::MultiphaseFiniteDifferenceImageFilter().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

IdCellType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_FunctionCount

protected

Definition at line 406 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::GetDifferenceFunction(), itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::GetLevelSet(), itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::InitializeIteration(), itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::MultiphaseFiniteDifferenceImageFilter(), itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::SetDifferenceFunction(), and itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::SetFunctionCount().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

bool itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_InitializedState

private

State that the filter is in, i.e. UNINITIALIZED or INITIALIZED

Definition at line 532 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::MultiphaseFiniteDifferenceImageFilter().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

KdTreePointer itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_KdTree

protected

Definition at line 409 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::MultiphaseFiniteDifferenceImageFilter(), and itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::SetKdTree().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

std::vector< InputImagePointer > itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_LevelSet

protected

Definition at line 407 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::GetLevelSet(), itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::SetFunctionCount(), and itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::SetLevelSet().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

VectorIdCellType itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_Lookup

protected

Definition at line 408 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::SetFunctionCount(), and itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::SetLookup().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

bool itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_ManualReinitialization

private

Indicates whether the filter automatically resets to UNINITIALIZED state after completing, or whether filter must be manually reset

Definition at line 529 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::MultiphaseFiniteDifferenceImageFilter().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

double itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_MaximumRMSError

protected

Definition at line 412 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::MultiphaseFiniteDifferenceImageFilter().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

unsigned int itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_NumberOfIterations

protected

Definition at line 414 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::MultiphaseFiniteDifferenceImageFilter().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

double itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_RMSChange

protected

Definition at line 413 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::MultiphaseFiniteDifferenceImageFilter().

template<typename TInputImage, typename TFeatureImage, typename TOutputImage, typename TFiniteDifferenceFunction = FiniteDifferenceFunction< TOutputImage >, typename TIdCell = unsigned int>

bool itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFiniteDifferenceFunction, TIdCell >::m_UseImageSpacing

protected

Control whether derivatives use spacing of the input image in its calculation.

Definition at line 421 of file itkMultiphaseFiniteDifferenceImageFilter.h.

Referenced by itk::MultiphaseFiniteDifferenceImageFilter< TInputImage, TFeatureImage, TOutputImage, TFunction, unsigned int >::MultiphaseFiniteDifferenceImageFilter().

The documentation for this class was generated from the following file: