itkSparseFieldLevelSetImageFilter.h

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkSparseFieldLevelSetImageFilter_h
#define itkSparseFieldLevelSetImageFilter_h

#include "itkFiniteDifferenceImageFilter.h"
#include "itkMultiThreader.h"
#include "itkSparseFieldLayer.h"
#include "itkObjectStore.h"
#include <vector>
#include "itkNeighborhoodIterator.h"

namespace itk
{
template< typename TValue >
class SparseFieldLevelSetNode
{
public:
  TValue               m_Value;
  SparseFieldLevelSetNode *Next;
  SparseFieldLevelSetNode *Previous;
};

template< typename TNeighborhoodType >
class SparseFieldCityBlockNeighborList
{
public:
  typedef TNeighborhoodType                     NeighborhoodType;
  typedef typename NeighborhoodType::OffsetType OffsetType;
  typedef typename NeighborhoodType::RadiusType RadiusType;
  itkStaticConstMacro(Dimension, unsigned int,
                      NeighborhoodType::Dimension);

  const RadiusType & GetRadius() const
  { return m_Radius; }

  const unsigned int & GetArrayIndex(unsigned int i) const
  { return m_ArrayIndex[i]; }

  const OffsetType & GetNeighborhoodOffset(unsigned int i) const
  { return m_NeighborhoodOffset[i]; }

  const unsigned int & GetSize() const
  { return m_Size; }

  int GetStride(unsigned int i)
  { return m_StrideTable[i]; }

  SparseFieldCityBlockNeighborList();
  ~SparseFieldCityBlockNeighborList() {}

  void Print(std::ostream & os) const;

private:
  unsigned int                m_Size;
  RadiusType                  m_Radius;
  std::vector< unsigned int > m_ArrayIndex;
  std::vector< OffsetType >   m_NeighborhoodOffset;

  unsigned m_StrideTable[Dimension];
};

template< typename TInputImage, typename TOutputImage >
class SparseFieldLevelSetImageFilter:
  public FiniteDifferenceImageFilter< TInputImage, TOutputImage >
{
public:

  typedef SparseFieldLevelSetImageFilter                           Self;
  typedef FiniteDifferenceImageFilter< TInputImage, TOutputImage > Superclass;
  typedef SmartPointer< Self >                                     Pointer;
  typedef SmartPointer< const Self >                               ConstPointer;

  typedef typename Superclass::TimeStepType           TimeStepType;
  typedef typename Superclass::RadiusType             RadiusType;
  typedef typename Superclass::NeighborhoodScalesType NeighborhoodScalesType;

  itkNewMacro(Self);

  itkTypeMacro(SparseFieldLevelSetImageFilter, FiniteDifferenceImageFilter);

  typedef TInputImage                         InputImageType;
  typedef TOutputImage                        OutputImageType;
  typedef typename OutputImageType::IndexType IndexType;
  itkStaticConstMacro(ImageDimension, unsigned int,
                      TOutputImage::ImageDimension);

  typedef typename OutputImageType::ValueType ValueType;

  typedef SparseFieldLevelSetNode< IndexType > LayerNodeType;

  typedef SparseFieldLayer< LayerNodeType > LayerType;
  typedef typename LayerType::Pointer       LayerPointerType;

  typedef std::vector< LayerPointerType > LayerListType;

  typedef signed char StatusType;

  typedef Image< StatusType, itkGetStaticConstMacro(ImageDimension) >
  StatusImageType;

  typedef ObjectStore< LayerNodeType > LayerNodeStorageType;

  typedef std::vector< ValueType > UpdateBufferType;

  itkSetMacro(NumberOfLayers, unsigned int);
  itkGetConstMacro(NumberOfLayers, unsigned int);

  itkSetMacro(IsoSurfaceValue, ValueType);
  itkGetConstMacro(IsoSurfaceValue, ValueType);

  //  itkGetConstMacro(RMSChange, ValueType);

  itkSetMacro(InterpolateSurfaceLocation, bool);
  itkGetConstMacro(InterpolateSurfaceLocation, bool);

  void InterpolateSurfaceLocationOn()
  { this->SetInterpolateSurfaceLocation(true); }
  void InterpolateSurfaceLocationOff()
  { this->SetInterpolateSurfaceLocation(false); }

#ifdef ITK_USE_CONCEPT_CHECKING
  // Begin concept checking
  itkConceptMacro( OutputEqualityComparableCheck,
                   ( Concept::EqualityComparable< typename TOutputImage::PixelType > ) );
  itkConceptMacro( DoubleConvertibleToOutputCheck,
                   ( Concept::Convertible< double, typename TOutputImage::PixelType > ) );
  itkConceptMacro( OutputOStreamWritableCheck,
                   ( Concept::OStreamWritable< typename TOutputImage::PixelType > ) );
  // End concept checking
#endif

protected:
  SparseFieldLevelSetImageFilter();
  ~SparseFieldLevelSetImageFilter();
  virtual void PrintSelf(std::ostream & os, Indent indent) const ITK_OVERRIDE;

  inline virtual ValueType CalculateUpdateValue(
    const IndexType & itkNotUsed(idx),
    const TimeStepType & dt,
    const ValueType & value,
    const ValueType & change)
  { return ( value + dt * change ); }

  virtual void PostProcessOutput() ITK_OVERRIDE;

  virtual void InitializeBackgroundPixels();

  void Initialize() ITK_OVERRIDE;

  void CopyInputToOutput() ITK_OVERRIDE;

  void AllocateUpdateBuffer() ITK_OVERRIDE;

  void ApplyUpdate(const TimeStepType& dt) ITK_OVERRIDE;

  TimeStepType CalculateChange() ITK_OVERRIDE;

  void ConstructLayer(StatusType from, StatusType to);

  void ConstructActiveLayer();

  void InitializeActiveLayerValues();

  void PropagateLayerValues(StatusType from, StatusType to,
                            StatusType promote, int InOrOut);

  void PropagateAllLayerValues();

  void UpdateActiveLayerValues(TimeStepType dt, LayerType *StatusUpList,
                               LayerType *StatusDownList);

  void ProcessStatusList(LayerType *InputList, LayerType *OutputList,
                         StatusType ChangeToStatus, StatusType SearchForStatus);

  void ProcessOutsideList(LayerType *OutsideList, StatusType ChangeToStatus);

  itkGetConstMacro(ValueZero, ValueType);
  itkGetConstMacro(ValueOne, ValueType);

  SparseFieldCityBlockNeighborList< NeighborhoodIterator< OutputImageType > >
  m_NeighborList;

  double m_ConstantGradientValue;

  static ValueType m_ValueOne;

  static ValueType m_ValueZero;

  static StatusType m_StatusChanging;

  static StatusType m_StatusActiveChangingUp;

  static StatusType m_StatusActiveChangingDown;

  static StatusType m_StatusBoundaryPixel;

  static StatusType m_StatusNull;

  typename OutputImageType::Pointer m_ShiftedImage;

  LayerListType m_Layers;

  unsigned int m_NumberOfLayers;

  typename StatusImageType::Pointer m_StatusImage;

  typename LayerNodeStorageType::Pointer m_LayerNodeStore;

  ValueType m_IsoSurfaceValue;

  UpdateBufferType m_UpdateBuffer;

  //  ValueType m_RMSChange;

  bool m_InterpolateSurfaceLocation;

  const InputImageType *m_InputImage;
  OutputImageType      *m_OutputImage;

private:
  SparseFieldLevelSetImageFilter(const Self &); //purposely not implemented
  void operator=(const Self &);                 //purposely not implemented

  bool m_BoundsCheckingActive;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkSparseFieldLevelSetImageFilter.hxx"
#endif

#endif