#include <itkNarrowBandImageFilterBase.h>

Inheritance diagram for itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >:

Collaboration diagram for itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >:

Detailed Description

template<typename TInputImage, typename TOutputImage>
class itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >

This class implements a multi-threaded finite difference image to image solver that can be applied to an arbitrary list of pixels.

: This class is intended as a common base class for classical narrowband solvers and manifold solvers. This base class implements a common memory management and multi-threaded architecture for applying a finite difference function to a list of pixels in an image. The specifics of narrowband solvers such as re-initialization and the use of land-mines are not implemented.

INPUTS: This filter takes an itk::Image as input. The appropriate type of input image is entirely determined by the application. As a rule, however, the input type is immediately converted to the output type before processing. This is because the input is not assumed to be a real value type and must be converted to signed, real values for the calculations.

OUTPUTS: The output is an itk::Image and is the solution of the pde. The embedding of the interface may vary with the application, but the usual ITK convention is that it is the zero level set in the output image.

IMPORTANT!: Read the documentation for FiniteDifferenceImageFilter before attempting to use this filter. The solver requires that you specify a FiniteDifferenceFunction to use for calculations. This is set using the method SetDifferenceFunction in the parent class.

REFERENCES: Sethian, J.A. Level Set Methods. Cambridge University Press. 1996.

Definition at line 70 of file itkNarrowBandImageFilterBase.h.

Classes
struct	ThreadRegionType

Public Types
using	BandNodeType = BandNode< IndexType, PixelType >

using	ConstPointer = SmartPointer< const Self >

using	FiniteDifferenceFunctionType = typename Superclass::FiniteDifferenceFunctionType

using	IndexType = typename OutputImageType::IndexType

using	InputImageType = typename Superclass::InputImageType

using	NarrowBandIterator = typename NarrowBandType::Iterator

using	NarrowBandPointer = typename NarrowBandType::Pointer

using	NarrowBandType = NarrowBand< BandNodeType >

using	OutputImageType = typename Superclass::OutputImageType

using	PixelType = typename Superclass::PixelType

using	Pointer = SmartPointer< Self >

using	RegionType = typename NarrowBandType::RegionType

using	Self = NarrowBandImageFilterBase

using	Superclass = FiniteDifferenceImageFilter< TInputImage, TOutputImage >

using	TimeStepType = typename Superclass::TimeStepType

using	ValueType = typename OutputImageType::ValueType

Public Types inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
using	ConstPointer = SmartPointer< const Self >

using	FiniteDifferenceFunctionType = FiniteDifferenceFunction< TOutputImage >

using	InputImageType = TInputImage

using	InputPixelType = typename TInputImage::PixelType

using	InputPixelValueType = typename NumericTraits< InputPixelType >::ValueType

using	NeighborhoodScalesType = typename FiniteDifferenceFunctionType::NeighborhoodScalesType

using	OutputImageType = TOutputImage

using	OutputPixelType = typename TOutputImage::PixelType

using	OutputPixelValueType = typename NumericTraits< OutputPixelType >::ValueType

using	PixelType = OutputPixelType

using	Pointer = SmartPointer< Self >

using	RadiusType = typename FiniteDifferenceFunctionType::RadiusType

using	Self = FiniteDifferenceImageFilter

using	Superclass = InPlaceImageFilter< TInputImage, TOutputImage >

using	TimeStepType = typename FiniteDifferenceFunctionType::TimeStepType

Public Types inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
using	ConstPointer = SmartPointer< const Self >

using	InputImageConstPointer = typename InputImageType::ConstPointer

using	InputImagePixelType = typename InputImageType::PixelType

using	InputImagePointer = typename InputImageType::Pointer

using	InputImageRegionType = typename InputImageType::RegionType

using	InputImageType = TInputImage

using	OutputImagePixelType = typename Superclass::OutputImagePixelType

using	OutputImagePointer = typename Superclass::OutputImagePointer

using	OutputImageRegionType = typename Superclass::OutputImageRegionType

using	OutputImageType = typename Superclass::OutputImageType

using	Pointer = SmartPointer< Self >

using	Self = InPlaceImageFilter

using	Superclass = ImageToImageFilter< TInputImage, TOutputImage >

Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
using	ConstPointer = SmartPointer< const Self >

using	InputImageConstPointer = typename InputImageType::ConstPointer

using	InputImagePixelType = typename InputImageType::PixelType

using	InputImagePointer = typename InputImageType::Pointer

using	InputImageRegionType = typename InputImageType::RegionType

using	InputImageType = TInputImage

using	OutputImagePixelType = typename Superclass::OutputImagePixelType

using	OutputImageRegionType = typename Superclass::OutputImageRegionType

using	Pointer = SmartPointer< Self >

using	Self = ImageToImageFilter

using	Superclass = ImageSource< TOutputImage >

Public Types inherited from itk::ImageSource< TOutputImage >
using	ConstPointer = SmartPointer< const Self >

using	DataObjectIdentifierType = Superclass::DataObjectIdentifierType

using	DataObjectPointer = DataObject::Pointer

using	DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType

using	OutputImagePixelType = typename OutputImageType::PixelType

using	OutputImagePointer = typename OutputImageType::Pointer

using	OutputImageRegionType = typename OutputImageType::RegionType

using	OutputImageType = TOutputImage

using	Pointer = SmartPointer< Self >

using	Self = ImageSource

using	Superclass = ProcessObject

Public Types inherited from itk::ProcessObject
using	ConstPointer = SmartPointer< const Self >

using	DataObjectIdentifierType = DataObject::DataObjectIdentifierType

using	DataObjectPointer = DataObject::Pointer

using	DataObjectPointerArray = std::vector< DataObjectPointer >

using	DataObjectPointerArraySizeType = DataObjectPointerArray::size_type

using	MultiThreaderType = MultiThreaderBase

using	NameArray = std::vector< DataObjectIdentifierType >

using	Pointer = SmartPointer< Self >

using	Self = ProcessObject

using	Superclass = Object

Public Types inherited from itk::Object
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = Object

using	Superclass = LightObject

Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = LightObject

Public Member Functions
void	CopyInputToOutput () override

virtual void	CreateNarrowBand ()

virtual const char *	GetNameOfClass () const

float	GetNarrowBandInnerRadius () const

float	GetNarrowBandTotalRadius () const

void	InsertNarrowBandNode (const IndexType &index)

void	InsertNarrowBandNode (const IndexType &index, const PixelType &value, const signed char &nodestate)

virtual void	SetNarrowBand (NarrowBandType *ptr)


virtual void	SetIsoSurfaceValue (ValueType _arg)

virtual ValueType	GetIsoSurfaceValue () const


void	InsertNarrowBandNode (const BandNodeType &node)


void	SetNarrowBandTotalRadius (const float &val)


void	SetNarrowBandInnerRadius (const float &val)

Public Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
virtual const FiniteDifferenceFunctionType::Pointer &	GetDifferenceFunction () const

virtual const IdentifierType &	GetElapsedIterations () const

virtual bool	GetIsInitialized ()

virtual void	SetDifferenceFunction (FiniteDifferenceFunctionType *_arg)

virtual void	SetIsInitialized (bool _arg)

void	SetStateToInitialized ()

void	SetStateToUninitialized ()

virtual void	SetNumberOfIterations (IdentifierType _arg)

virtual const IdentifierType &	GetNumberOfIterations () const

virtual void	SetUseImageSpacing (bool _arg)

virtual void	UseImageSpacingOn ()

virtual void	UseImageSpacingOff ()

virtual const bool &	GetUseImageSpacing () const

virtual void	SetMaximumRMSError (double _arg)

virtual const double &	GetMaximumRMSError () const

virtual void	SetRMSChange (double _arg)

virtual const double &	GetRMSChange () const

virtual void	SetManualReinitialization (bool _arg)

virtual const bool &	GetManualReinitialization () const

virtual void	ManualReinitializationOn ()

virtual void	ManualReinitializationOff ()

Public Member Functions inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
virtual bool	CanRunInPlace () const

virtual void	SetInPlace (bool _arg)

virtual bool	GetInPlace () const

virtual void	InPlaceOn ()

virtual void	InPlaceOff ()

Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput () const

const InputImageType *	GetInput (unsigned int idx) const

void	PopBackInput () override

void	PopFrontInput () override

virtual void	PushBackInput (const InputImageType *image)

virtual void	PushFrontInput (const InputImageType *image)

virtual void	SetInput (const InputImageType *image)

virtual void	SetInput (unsigned int, const TInputImage *image)

virtual void	SetCoordinateTolerance (double _arg)

virtual double	GetCoordinateTolerance () const

virtual void	SetDirectionTolerance (double _arg)

virtual double	GetDirectionTolerance () const

Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)

OutputImageType *	GetOutput ()

const OutputImageType *	GetOutput () const

virtual void	GraftOutput (DataObject *output)

virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)

virtual void	GraftNthOutput (unsigned int idx, DataObject *output)

ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override

ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual void	EnlargeOutputRequestedRegion (DataObject *)

virtual const bool &	GetAbortGenerateData () const

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

NameArray	GetInputNames () const

DataObjectPointerArray	GetInputs ()

MultiThreaderType *	GetMultiThreader () const

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

DataObjectPointerArray	GetOutputs ()

virtual const float &	GetProgress () const

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

void	SetMultiThreader (MultiThreaderType *threader)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float progress)

virtual void	SetReleaseDataFlag (bool flag)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag () const

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	SetNumberOfWorkUnits (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfWorkUnits () const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

LightObject::Pointer	CreateAnother () const override

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetReferenceCount (int) override

void	UnRegister () const noexceptoverride

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Attributes
static constexpr unsigned int	ImageDimension = Superclass::ImageDimension

Static Public Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
static constexpr unsigned int	ImageDimension = OutputImageType::ImageDimension

Static Public Attributes inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
static constexpr unsigned int	InputImageDimension = TInputImage::ImageDimension

static constexpr unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static constexpr unsigned int	InputImageDimension = TInputImage::ImageDimension

static constexpr unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static constexpr unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Member Functions
void	ClearNarrowBand ()

void	GenerateData () override

void	GetSplitRegion (const vcl_size_t &i, ThreadRegionType &splitRegion)

void	Initialize () override

void	InitializeIteration () override

	NarrowBandImageFilterBase ()

void	PostProcessOutput () override

void	PrintSelf (std::ostream &os, Indent indent) const override

	~NarrowBandImageFilterBase () override=default

Protected Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
	FiniteDifferenceImageFilter ()

void	GenerateInputRequestedRegion () override

virtual bool	Halt ()

virtual TimeStepType	ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const

virtual void	SetElapsedIterations (IdentifierType _arg)

virtual bool	ThreadedHalt (void *)

	~FiniteDifferenceImageFilter () override=default

Protected Member Functions inherited from itk::InPlaceImageFilter< TInputImage, TOutputImage >
void	AllocateOutputs () override

virtual bool	GetRunningInPlace () const

	InPlaceImageFilter ()=default

void	ReleaseInputs () override

	~InPlaceImageFilter () override=default

Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)

virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)

	ImageToImageFilter ()

void	VerifyInputInformation () ITKv5_CONST override

	~ImageToImageFilter () override

void	PushBackInput (const DataObject *input) override

void	PushFrontInput (const DataObject *input) override

Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()

virtual void	BeforeThreadedGenerateData ()

void	ClassicMultiThread (ThreadFunctionType callbackFunction)

virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const

	ImageSource ()

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)

	~ImageSource () override=default

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)

virtual void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread)

virtual bool	GetDynamicMultiThreading () const

virtual void	SetDynamicMultiThreading (bool _arg)

virtual void	DynamicMultiThreadingOn ()

virtual void	DynamicMultiThreadingOff ()

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

void	AddOptionalInputName (const DataObjectIdentifierType &)

void	AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

virtual void	AddOutput (DataObject *output)

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateOutputInformation ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)

virtual void	SetPrimaryInput (DataObject *input)

virtual void	SetPrimaryOutput (DataObject *output)

void	SetRequiredInputNames (const NameArray &)

virtual void	VerifyPreconditions () ITKv5_CONST

	~ProcessObject () override

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName () const

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName () const

DataObject *	GetOutput (DataObjectPointerArraySizeType idx)

const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

	~Object () override

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
ValueType	m_IsoSurfaceValue

NarrowBandPointer	m_NarrowBand

std::vector< RegionType >	m_RegionList

IdentifierType	m_ReinitializationFrequency

IdentifierType	m_Step

bool	m_Touched

std::vector< bool >	m_TouchedForThread

Protected Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >
IdentifierType	m_ElapsedIterations

bool	m_IsInitialized

bool	m_ManualReinitialization

double	m_MaximumRMSError

IdentifierType	m_NumberOfIterations

double	m_RMSChange

Protected Attributes inherited from itk::ImageSource< TOutputImage >
bool	m_DynamicMultiThreading

Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime

bool	m_Updating

Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount

Private Member Functions
void	AllocateUpdateBuffer () override

void	ApplyUpdate (const TimeStepType &) override

TimeStepType	CalculateChange () override

virtual void	ThreadedApplyUpdate (const TimeStepType &dt, const ThreadRegionType &regionToProcess, ThreadIdType threadId)

virtual TimeStepType	ThreadedCalculateChange (const ThreadRegionType &regionToProcess)

Additional Inherited Members
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
using	InputToOutputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::OutputImageDimension, Self::InputImageDimension >

using	OutputToInputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::InputImageDimension, Self::OutputImageDimension >

Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderCallback (void *arg)

Member Typedef Documentation

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::BandNodeType = BandNode< IndexType, PixelType >

This is the storage type for the nodes on the narrow band.

Definition at line 109 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ConstPointer = SmartPointer< const Self >

Definition at line 80 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::FiniteDifferenceFunctionType = typename Superclass::FiniteDifferenceFunctionType

Definition at line 88 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::IndexType = typename OutputImageType::IndexType

The index type for the output image.

Definition at line 102 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InputImageType = typename Superclass::InputImageType

Typedefs from the superclass

Definition at line 86 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::NarrowBandIterator = typename NarrowBandType::Iterator

Definition at line 115 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::NarrowBandPointer = typename NarrowBandType::Pointer

Definition at line 113 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::NarrowBandType = NarrowBand< BandNodeType >

The list type for storing the narrow band.

Definition at line 112 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::OutputImageType = typename Superclass::OutputImageType

Definition at line 87 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::PixelType = typename Superclass::PixelType

The pixel type of the output image will be used in computations. Inherited from the superclass.

Definition at line 96 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::Pointer = SmartPointer< Self >

Definition at line 79 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::RegionType = typename NarrowBandType::RegionType

Definition at line 114 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::Self = NarrowBandImageFilterBase

Standard class type aliases

Definition at line 77 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::Superclass = FiniteDifferenceImageFilter< TInputImage, TOutputImage >

Definition at line 78 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::TimeStepType = typename Superclass::TimeStepType

The value type of a time step. Inherited from the superclass.

Definition at line 99 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

using itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ValueType = typename OutputImageType::ValueType

The data type used in numerical computations. Derived from the output image type.

Definition at line 106 of file itkNarrowBandImageFilterBase.h.

Constructor & Destructor Documentation

template<typename TInputImage, typename TOutputImage>

itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::NarrowBandImageFilterBase ( )

inlineprotected

Definition at line 215 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::~NarrowBandImageFilterBase ( )

overrideprotecteddefault

Member Function Documentation

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::AllocateUpdateBuffer ( )

inlineoverrideprivatevirtual

This method allocates a temporary update container in the subclass.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Definition at line 296 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ApplyUpdate ( const TimeStepType & dt )

inlineoverrideprivatevirtual

This method is defined by a subclass to apply changes to the output from an update buffer and a time step value "dt".

Parameters

dt	Time step value.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Definition at line 305 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

TimeStepType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::CalculateChange ( )

inlineoverrideprivatevirtual

This method is defined by a subclass to populate an update buffer with changes for the pixels in the output. It returns a time step value to be used for the update.

Returns: A time step to use in updating the output with the changes calculated from this method.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Definition at line 312 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ClearNarrowBand ( )

protected

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::CopyInputToOutput ( )

overridevirtual

This method can be defined in subclasses as needed to copy the input to the output. See DenseFiniteDifferenceImageFilter for an implementation.

Implements itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>

virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::CreateNarrowBand ( )

inlinevirtual

This is the virtual method called by Initialize to set the band of operation. It is left to the subclasses to define this functionality. This function can make use of above InsertNarrowBandNode function to create a band.

Reimplemented in itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, TOutputImage >, and itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType, TInputImage::ImageDimension > >.

Definition at line 201 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GenerateData ( )

overrideprotectedvirtual

This is the default, high-level algorithm for calculating finite difference solutions. It calls virtual methods in its subclasses to implement the major steps of the algorithm.

This method is a thread implementation of the iterative scheme implemented in itkFiniteDifferenceImageFilter::GenerateData. It relies on ThreadedApplyUpdate and ThreadedCalculateChange to update the solution at every iteration.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, TOutputImage >, and itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType, TInputImage::ImageDimension > >.

template<typename TInputImage, typename TOutputImage>

virtual ValueType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GetIsoSurfaceValue ( ) const

virtual

Set/Get IsoSurfaceValue to use in the input image

template<typename TInputImage, typename TOutputImage>

virtual const char* itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, TOutputImage >, itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType, TInputImage::ImageDimension > >, itk::NarrowBandCurvesLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >, and itk::NarrowBandThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

template<typename TInputImage, typename TOutputImage>

float itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GetNarrowBandInnerRadius ( ) const

inline

Get the narrow band inner radius.

Definition at line 191 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

float itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GetNarrowBandTotalRadius ( ) const

inline

Get the narrow band total radius.

Definition at line 173 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::GetSplitRegion	(	const vcl_size_t &	i,
		ThreadRegionType &	splitRegion
	)

protected

This function returns a single region (of the narrow band list) for use in multi-threading

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::Initialize ( )

overrideprotectedvirtual

This function clears the existing narrow band, calls CreateNarrowBand to create a band, and calls the SplitRegions function of NarrowBand to pre-partition the band for multi-threading.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InitializeIteration ( )

overrideprotectedvirtual

This method check the narrow band state each iteration and reinitialize the narrow band if it is appropriate calling CreateNarrowBand and SplitRegions to pre-partion the band for multi-threading.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, TOutputImage >, and itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType, TInputImage::ImageDimension > >.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InsertNarrowBandNode ( const BandNodeType & node )

inline

Root Mean Square Change between successive iterations This function is used to insert a pixel index into the narrow band The entire narrow band can be constructed using this method. Usually, however, the narrow band is initialized and reinitialized automatically by the subclass.

Definition at line 129 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InsertNarrowBandNode ( const IndexType & index )

inline

Definition at line 136 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InsertNarrowBandNode	(	const IndexType &	index,
		const PixelType &	value,
		const signed char &	nodestate
	)

inline

Definition at line 145 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::PostProcessOutput ( )

overrideprotectedvirtual

This method allows deallocation of data and further post processing

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, TOutputImage >, and itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, Image< TOutputPixelType, TInputImage::ImageDimension > >.

template<typename TInputImage, typename TOutputImage>

virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetIsoSurfaceValue ( ValueType _arg )

virtual

Set/Get IsoSurfaceValue to use in the input image

template<typename TInputImage, typename TOutputImage>

virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetNarrowBand ( NarrowBandType * ptr )

inlinevirtual

Definition at line 203 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetNarrowBandInnerRadius ( const float & val )

inline

Set the narrow band inner radius. The inner radius is the safe are where the level set can be computed. The default value is 1.

Definition at line 180 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetNarrowBandTotalRadius ( const float & val )

inline

Set the narrow band total radius. The narrow band width will be twice this value (positive and negative distance to the zero level set). The default value is 3.

Definition at line 162 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

virtual void itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ThreadedApplyUpdate	(	const TimeStepType &	dt,
		const ThreadRegionType &	regionToProcess,
		ThreadIdType	threadId
	)

privatevirtual

This method applies changes from the m_NarrowBand to the output using the ThreadedApplyUpdate() method and a multithreading mechanism. "dt" is the time step to use for the update of each pixel.

template<typename TInputImage, typename TOutputImage>

virtual TimeStepType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ThreadedCalculateChange ( const ThreadRegionType & regionToProcess )

privatevirtual

This method populates m_NarrowBand with changes for each pixel in the output using the ThreadedCalculateChange() method and a multithreading mechanism. Returns value is a time step to be used for the update.

Member Data Documentation

template<typename TInputImage, typename TOutputImage>

constexpr unsigned int itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::ImageDimension = Superclass::ImageDimension

static

Dimensionality of input and output data is assumed to be the same. It is inherited from the superclass.

Definition at line 92 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

ValueType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_IsoSurfaceValue

protected

Definition at line 287 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

NarrowBandPointer itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_NarrowBand

protected

Definition at line 229 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

std::vector< RegionType > itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_RegionList

protected

A list of subregions of the narrowband which are passed to each thread for parallel processing.

Definition at line 245 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

IdentifierType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_ReinitializationFrequency

protected

Definition at line 280 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

IdentifierType itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_Step

protected

Definition at line 281 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

bool itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_Touched

protected

Definition at line 283 of file itkNarrowBandImageFilterBase.h.

template<typename TInputImage, typename TOutputImage>

std::vector< bool > itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::m_TouchedForThread

protected

Definition at line 285 of file itkNarrowBandImageFilterBase.h.

The documentation for this class was generated from the following file:

itkNarrowBandImageFilterBase.h

Detailed Description

template<typename TInputImage, typename TOutputImage> class itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >

Classes

Public Types

Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Private Member Functions

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<typename TInputImage, typename TOutputImage>
class itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >