ITK  5.0.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Protected Attributes | Private Attributes | List of all members
itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet > Class Template Reference

#include <itkSyNImageRegistrationMethod.h>

+ Inheritance diagram for itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >:
+ Collaboration diagram for itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >:

Detailed Description

template<typename TFixedImage, typename TMovingImage, typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
class itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >

Interface method for the performing greedy SyN image registration.

For greedy SyN we use m_Transform to map the time-parameterized middle image to the fixed image (and vice versa using m_Transform->GetInverseDisplacementField() ). We employ another ivar, m_InverseTransform, to map the time-parameterized middle image to the moving image.

Output: The output is the updated transform which has been added to the composite transform.

This implementation is based on the source code in Advanced Normalization Tools (ANTs)

Avants, B. B.; Tustison, N. J.; Song, G.; Cook, P. A.; Klein, A. & Gee, J. C. A reproducible evaluation of ANTs similarity metric performance in brain image registration. Neuroimage, Penn Image Computing and Science Laboratory, University of Pennsylvania, 2011, 54, 2033-2044

The original paper discussing the method is here:

Avants, B. B.; Epstein, C. L.; Grossman, M. & Gee, J. C. Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain. Med Image Anal, Department of Radiology, University of Pennsylvania, 2008, 12, 26-41

The method evolved since that time with crucial contributions from Gang Song and Nick Tustison. Though similar in spirit, this implementation is not identical.

Todo:
Need to allow the fixed image to have a composite transform.
Author
Nick Tustison
Brian Avants

Definition at line 70 of file itkSyNImageRegistrationMethod.h.

Public Types

using CompositeTransformType = typename Superclass::CompositeTransformType
 
using ConstPointer = SmartPointer< const Self >
 
using DecoratedOutputTransformPointer = typename DecoratedOutputTransformType::Pointer
 
using DecoratedOutputTransformType = typename Superclass::DecoratedOutputTransformType
 
using DerivativeType = typename OutputTransformType::DerivativeType
 
using DerivativeValueType = typename DerivativeType::ValueType
 
using DisplacementFieldPointer = typename DisplacementFieldType::Pointer
 
using DisplacementFieldTransformPointer = typename DisplacementFieldTransformType::Pointer
 
using DisplacementFieldTransformType = DisplacementFieldTransform< RealType, ImageDimension >
 
using DisplacementFieldType = typename OutputTransformType::DisplacementFieldType
 
using DisplacementVectorType = typename DisplacementFieldType::PixelType
 
using FixedImageMasksContainerType = typename Superclass::FixedImageMasksContainerType
 
using FixedImageMaskType = typename Superclass::FixedImageMaskType
 
using FixedImagePointer = typename FixedImageType::Pointer
 
using FixedImagesContainerType = typename Superclass::FixedImagesContainerType
 
using FixedImageType = TFixedImage
 
using FixedMaskImageType = typename ImageMaskSpatialObjectType::ImageType
 
using ImageMaskSpatialObjectType = ImageMaskSpatialObject< ImageDimension >
 
using ImageMetricPointer = typename ImageMetricType::Pointer
 
using ImageMetricType = typename Superclass::ImageMetricType
 
using InitialTransformType = typename Superclass::InitialTransformType
 
using MeasureType = typename ImageMetricType::MeasureType
 
using MetricPointer = typename MetricType::Pointer
 
using MetricType = typename Superclass::MetricType
 
using MovingImageMasksContainerType = typename Superclass::MovingImageMasksContainerType
 
using MovingImageMaskType = typename Superclass::MovingImageMaskType
 
using MovingImagePointer = typename MovingImageType::Pointer
 
using MovingImagesContainerType = typename Superclass::MovingImagesContainerType
 
using MovingImageType = TMovingImage
 
using MovingMaskImageType = typename ImageMaskSpatialObjectType::ImageType
 
using MultiMetricType = typename Superclass::MultiMetricType
 
using NumberOfIterationsArrayType = Array< SizeValueType >
 
using OutputTransformPointer = typename OutputTransformType::Pointer
 
using OutputTransformType = TOutputTransform
 
using Pointer = SmartPointer< Self >
 
using PointSetMetricType = typename Superclass::PointSetMetricType
 
using PointSetPointer = typename PointSetType::Pointer
 
using PointSetsContainerType = typename Superclass::PointSetsContainerType
 
using PointSetType = typename Superclass::PointSetType
 
using RealType = typename OutputTransformType::ScalarType
 
using Self = SyNImageRegistrationMethod
 
using Superclass = ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
 
using TransformBaseType = typename CompositeTransformType::TransformType
 
using VirtualImageBaseConstPointer = typename Superclass::VirtualImageBaseConstPointer
 
using VirtualImageBaseType = typename Superclass::VirtualImageBaseType
 
using VirtualImageType = typename Superclass::VirtualImageType
 
- Public Types inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
using CompositeTransformPointer = typename CompositeTransformType::Pointer
 
using CompositeTransformType = CompositeTransform< RealType, ImageDimension >
 
using ConstPointer = SmartPointer< const Self >
 
using DataObjectPointerArraySizeType = ProcessObject::DataObjectPointerArraySizeType
 
using DecoratedInitialTransformPointer = typename DecoratedInitialTransformType::Pointer
 
using DecoratedInitialTransformType = DataObjectDecorator< InitialTransformType >
 
using DecoratedOutputTransformPointer = typename DecoratedOutputTransformType::Pointer
 
using DecoratedOutputTransformType = DataObjectDecorator< OutputTransformType >
 
using DerivativeType = typename OutputTransformType::DerivativeType
 
using DerivativeValueType = typename DerivativeType::ValueType
 
using FixedImageConstPointer = typename FixedImageType::ConstPointer
 
using FixedImageMaskConstPointer = typename FixedImageMaskType::ConstPointer
 
using FixedImageMasksContainerType = std::vector< FixedImageMaskConstPointer >
 
using FixedImageMaskType = typename ImageMetricType::FixedImageMaskType
 
using FixedImagePointer = typename FixedImageType::Pointer
 
using FixedImagesContainerType = std::vector< FixedImageConstPointer >
 
using FixedImageType = TFixedImage
 
using ImageMetricType = ImageToImageMetricv4< FixedImageType, MovingImageType, VirtualImageType, RealType >
 
using InitialTransformPointer = typename InitialTransformType::Pointer
 
using InitialTransformType = Transform< RealType, ImageDimension, ImageDimension >
 
using MetricPointer = typename MetricType::Pointer
 
using MetricSamplePointSetType = typename ImageMetricType::FixedSampledPointSetType
 
using MetricSamplingPercentageArrayType = Array< RealType >
 
enum  MetricSamplingStrategyType {
  NONE,
  REGULAR,
  RANDOM
}
 
using MetricType = ObjectToObjectMetricBaseTemplate< RealType >
 
using MovingImageConstPointer = typename MovingImageType::ConstPointer
 
using MovingImageMaskConstPointer = typename MovingImageMaskType::ConstPointer
 
using MovingImageMasksContainerType = std::vector< MovingImageMaskConstPointer >
 
using MovingImageMaskType = typename ImageMetricType::MovingImageMaskType
 
using MovingImagePointer = typename MovingImageType::Pointer
 
using MovingImagesContainerType = std::vector< MovingImageConstPointer >
 
using MovingImageType = TMovingImage
 
using MultiMetricType = ObjectToObjectMultiMetricv4< ImageDimension, ImageDimension, VirtualImageType, RealType >
 
using OptimizerPointer = typename OptimizerType::Pointer
 
using OptimizerType = ObjectToObjectOptimizerBaseTemplate< RealType >
 
using OptimizerWeightsType = typename OptimizerType::ScalesType
 
using OutputTransformPointer = typename OutputTransformType::Pointer
 
using OutputTransformType = TOutputTransform
 
using Pointer = SmartPointer< Self >
 
using PointSetConstPointer = typename PointSetType::ConstPointer
 
using PointSetMetricType = PointSetToPointSetMetricv4< PointSetType, PointSetType, RealType >
 
using PointSetsContainerType = std::vector< PointSetConstPointer >
 
using PointSetType = TPointSet
 
using RealType = typename OutputTransformType::ScalarType
 
using Self = ImageRegistrationMethodv4
 
using ShrinkFactorsArrayType = Array< SizeValueType >
 
using ShrinkFactorsPerDimensionContainerType = typename ShrinkFilterType::ShrinkFactorsType
 
using ShrinkFilterType = ShrinkImageFilter< FixedImageType, VirtualImageType >
 
using SmoothingSigmasArrayType = Array< RealType >
 
using Superclass = ProcessObject
 
using TransformParametersAdaptorPointer = typename TransformParametersAdaptorType::Pointer
 
using TransformParametersAdaptorsContainerType = std::vector< TransformParametersAdaptorPointer >
 
using TransformParametersAdaptorType = TransformParametersAdaptorBase< InitialTransformType >
 
using VectorType = Vector< RealType, ImageDimension >
 
using VirtualImageBaseConstPointer = typename VirtualImageBaseType::ConstPointer
 
using VirtualImageBaseType = ImageBase< ImageDimension >
 
using VirtualImagePointer = typename VirtualImageType::Pointer
 
using VirtualImageType = TVirtualImage
 
- Public Types inherited from itk::ProcessObject
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = DataObject::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArray = std::vector< DataObjectPointer >
 
using DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
 
using MultiThreaderType = MultiThreaderBase
 
using NameArray = std::vector< DataObjectIdentifierType >
 
using Pointer = SmartPointer< Self >
 
using Self = ProcessObject
 
using Superclass = Object
 
- Public Types inherited from itk::Object
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = Object
 
using Superclass = LightObject
 
- Public Types inherited from itk::LightObject
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = LightObject
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
virtual const char * GetNameOfClass () const
 
virtual void SetLearningRate (RealType _arg)
 
virtual RealType GetLearningRate () const
 
virtual void SetNumberOfIterationsPerLevel (NumberOfIterationsArrayType _arg)
 
virtual NumberOfIterationsArrayType GetNumberOfIterationsPerLevel () const
 
virtual void SetConvergenceThreshold (RealType _arg)
 
virtual RealType GetConvergenceThreshold () const
 
virtual void SetConvergenceWindowSize (unsigned int _arg)
 
virtual unsigned int GetConvergenceWindowSize () const
 
virtual void SetDownsampleImagesForMetricDerivatives (bool _arg)
 
virtual bool GetDownsampleImagesForMetricDerivatives () const
 
virtual void SetAverageMidPointGradients (bool _arg)
 
virtual bool GetAverageMidPointGradients () const
 
virtual void SetGaussianSmoothingVarianceForTheUpdateField (RealType _arg)
 
virtual const RealTypeGetGaussianSmoothingVarianceForTheUpdateField () const
 
virtual void SetGaussianSmoothingVarianceForTheTotalField (RealType _arg)
 
virtual const RealTypeGetGaussianSmoothingVarianceForTheTotalField () const
 
virtual OutputTransformTypeGetModifiableFixedToMiddleTransform ()
 
virtual const OutputTransformTypeGetFixedToMiddleTransform () const
 
virtual OutputTransformTypeGetModifiableMovingToMiddleTransform ()
 
virtual const OutputTransformTypeGetMovingToMiddleTransform () const
 
virtual void SetFixedToMiddleTransform (OutputTransformType *_arg)
 
virtual void SetMovingToMiddleTransform (OutputTransformType *_arg)
 
- Public Member Functions inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
virtual const RealTypeGetCurrentConvergenceValue () const
 
virtual const SizeValueTypeGetCurrentIteration () const
 
virtual SizeValueType GetCurrentLevel () const
 
virtual const RealTypeGetCurrentMetricValue () const
 
virtual const
InitialTransformType
GetFixedInitialTransform () const
 
virtual const
DataObjectDecorator
< InitialTransformType > * 
GetFixedInitialTransformInput () const
 
virtual const
DataObjectDecorator
< InitialTransformType > * 
GetFixedInitialTransformInput () const
 
virtual const
InitialTransformType
GetInitialTransform () const
 
virtual const
DataObjectDecorator
< InitialTransformType > * 
GetInitialTransformInput () const
 
virtual const
DataObjectDecorator
< InitialTransformType > * 
GetInitialTransformInput () const
 
virtual const
DataObjectDecorator
< InitialTransformType > * 
GetInputnumber () const
 
virtual const
DataObjectDecorator
< InitialTransformType > * 
GetInputnumber () const
 
virtual const
DataObjectDecorator
< InitialTransformType > * 
GetInputnumber () const
 
virtual const bool & GetIsConverged () const
 
virtual OutputTransformTypeGetModifiableTransform ()
 
virtual const
InitialTransformType
GetMovingInitialTransform () const
 
virtual const
DataObjectDecorator
< InitialTransformType > * 
GetMovingInitialTransformInput () const
 
virtual const
DataObjectDecorator
< InitialTransformType > * 
GetMovingInitialTransformInput () const
 
virtual const OutputTransformTypeGetTransform () const
 
virtual
DecoratedOutputTransformType
GetTransformOutput ()
 
virtual const
DecoratedOutputTransformType
GetTransformOutput () const
 
void InitializeCenterOfLinearOutputTransform ()
 
DataObjectPointer MakeOutput (DataObjectPointerArraySizeType) override
 
virtual void SetFixedInitialTransform (const InitialTransformType *_arg)
 
virtual void SetFixedInitialTransformInput (const DataObjectDecorator< InitialTransformType > *_arg)
 
virtual void SetInitialTransform (const InitialTransformType *_arg)
 
virtual void SetInitialTransformInput (const DataObjectDecorator< InitialTransformType > *_arg)
 
virtual void SetInputnumber (const DataObjectDecorator< InitialTransformType > *_arg)
 
virtual void SetInputnumber (const DataObjectDecorator< InitialTransformType > *_arg)
 
virtual void SetInputnumber (const DataObjectDecorator< InitialTransformType > *_arg)
 
void SetMetricSamplingPercentage (const RealType)
 
virtual void SetMovingInitialTransform (const InitialTransformType *_arg)
 
virtual void SetMovingInitialTransformInput (const DataObjectDecorator< InitialTransformType > *_arg)
 
virtual void SetFixedImage (const FixedImageType *image)
 
virtual const FixedImageTypeGetFixedImage () const
 
virtual void SetFixedImage (SizeValueType, const FixedImageType *)
 
virtual const FixedImageTypeGetFixedImage (SizeValueType) const
 
virtual void SetMovingImage (const MovingImageType *image)
 
virtual const MovingImageTypeGetMovingImage () const
 
virtual void SetMovingImage (SizeValueType, const MovingImageType *)
 
virtual const MovingImageTypeGetMovingImage (SizeValueType) const
 
virtual void SetFixedPointSet (const PointSetType *pointSet)
 
virtual const PointSetTypeGetFixedPointSet () const
 
virtual void SetFixedPointSet (SizeValueType, const PointSetType *)
 
virtual const PointSetTypeGetFixedPointSet (SizeValueType) const
 
virtual void SetMovingPointSet (const PointSetType *pointSet)
 
virtual const PointSetTypeGetMovingPointSet () const
 
virtual void SetMovingPointSet (SizeValueType, const PointSetType *)
 
virtual const PointSetTypeGetMovingPointSet (SizeValueType) const
 
virtual void SetOptimizer (OptimizerType *_arg)
 
virtual OptimizerTypeGetModifiableOptimizer ()
 
virtual const OptimizerTypeGetOptimizer () const
 
void SetOptimizerWeights (OptimizerWeightsType &)
 
virtual OptimizerWeightsType GetOptimizerWeights () const
 
virtual void SetMetric (MetricType *_arg)
 
virtual MetricTypeGetModifiableMetric ()
 
virtual const MetricTypeGetMetric () const
 
virtual void SetMetricSamplingStrategy (MetricSamplingStrategyType _arg)
 
virtual MetricSamplingStrategyType GetMetricSamplingStrategy () const
 
void MetricSamplingReinitializeSeed ()
 
void MetricSamplingReinitializeSeed (int seed)
 
virtual void SetMetricSamplingPercentagePerLevel (const MetricSamplingPercentageArrayType &samplingPercentages)
 
virtual
MetricSamplingPercentageArrayType 
GetMetricSamplingPercentagePerLevel () const
 
void SetTransformParametersAdaptorsPerLevel (TransformParametersAdaptorsContainerType &)
 
const
TransformParametersAdaptorsContainerType
GetTransformParametersAdaptorsPerLevel () const
 
void SetNumberOfLevels (const SizeValueType)
 
virtual SizeValueType GetNumberOfLevels () const
 
void SetShrinkFactorsPerLevel (ShrinkFactorsArrayType factors)
 
ShrinkFactorsPerDimensionContainerType GetShrinkFactorsPerDimension (const unsigned int level) const
 
void SetShrinkFactorsPerDimension (unsigned int level, ShrinkFactorsPerDimensionContainerType factors)
 
virtual void SetSmoothingSigmasPerLevel (SmoothingSigmasArrayType _arg)
 
virtual SmoothingSigmasArrayType GetSmoothingSigmasPerLevel () const
 
virtual void SetSmoothingSigmasAreSpecifiedInPhysicalUnits (bool _arg)
 
virtual bool GetSmoothingSigmasAreSpecifiedInPhysicalUnits () const
 
virtual void SmoothingSigmasAreSpecifiedInPhysicalUnitsOn ()
 
virtual void SmoothingSigmasAreSpecifiedInPhysicalUnitsOff ()
 
virtual
DecoratedOutputTransformType
GetOutput ()
 
virtual const
DecoratedOutputTransformType
GetOutput () const
 
virtual void SetInPlace (bool _arg)
 
virtual bool GetInPlace () const
 
virtual void InPlaceOn ()
 
virtual void InPlaceOff ()
 
virtual void InitializeCenterOfLinearOutputTransformOn ()
 
virtual void InitializeCenterOfLinearOutputTransformOff ()
 
virtual void SetInitializeCenterOfLinearOutputTransform (bool _arg)
 
virtual bool GetInitializeCenterOfLinearOutputTransform () const
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreaderTypeGetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
void SetMultiThreader (MultiThreaderType *threader)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfWorkUnits (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfWorkUnits () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetReferenceCount (int) override
 
void UnRegister () const noexceptoverride
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMetaDataDictionary (MetaDataDictionary &&rrhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static constexpr unsigned int ImageDimension = TFixedImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
static constexpr unsigned int ImageDimension = TFixedImage::ImageDimension
 

Protected Member Functions

virtual DisplacementFieldPointer ComputeMetricGradientField (const FixedImagesContainerType, const PointSetsContainerType, const TransformBaseType *, const MovingImagesContainerType, const PointSetsContainerType, const TransformBaseType *, const FixedImageMasksContainerType, const MovingImageMasksContainerType, MeasureType &)
 
virtual DisplacementFieldPointer ComputeUpdateField (const FixedImagesContainerType, const PointSetsContainerType, const TransformBaseType *, const MovingImagesContainerType, const PointSetsContainerType, const TransformBaseType *, const FixedImageMasksContainerType, const MovingImageMasksContainerType, MeasureType &)
 
virtual DisplacementFieldPointer GaussianSmoothDisplacementField (const DisplacementFieldType *, const RealType)
 
void GenerateData () override
 
void InitializeRegistrationAtEachLevel (const SizeValueType) override
 
virtual DisplacementFieldPointer InvertDisplacementField (const DisplacementFieldType *, const DisplacementFieldType *=nullptr)
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
virtual DisplacementFieldPointer ScaleUpdateField (const DisplacementFieldType *)
 
virtual void StartOptimization ()
 
 SyNImageRegistrationMethod ()
 
 ~SyNImageRegistrationMethod () override=default
 
- Protected Member Functions inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
virtual void AllocateOutputs ()
 
virtual
VirtualImageBaseConstPointer 
GetCurrentLevelVirtualDomainImage ()
 
 ImageRegistrationMethodv4 ()
 
virtual void SetMetricSamplePoints ()
 
 ~ImageRegistrationMethodv4 () override=default
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateInputRequestedRegion ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
virtual void PopBackInput ()
 
virtual void PopFrontInput ()
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void PushBackInput (const DataObject *input)
 
virtual void PushFrontInput (const DataObject *input)
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyInputInformation () ITKv5_CONST
 
virtual void VerifyPreconditions () ITKv5_CONST
 
 ~ProcessObject () override
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
 ~Object () override
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Protected Attributes

bool m_AverageMidPointGradients { false }
 
RealType m_ConvergenceThreshold { static_cast<RealType>(1.0e-6) }
 
unsigned int m_ConvergenceWindowSize { 10 }
 
bool m_DownsampleImagesForMetricDerivatives { true }
 
OutputTransformPointer m_FixedToMiddleTransform { nullptr }
 
RealType m_LearningRate { 0.25 }
 
OutputTransformPointer m_MovingToMiddleTransform { nullptr }
 
NumberOfIterationsArrayType m_NumberOfIterationsPerLevel
 
- Protected Attributes inherited from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >
CompositeTransformPointer m_CompositeTransform
 
RealType m_CurrentConvergenceValue
 
SizeValueType m_CurrentIteration
 
SizeValueType m_CurrentLevel
 
RealType m_CurrentMetricValue
 
int m_CurrentRandomSeed
 
int m_FirstImageMetricIndex
 
FixedImageMasksContainerType m_FixedImageMasks
 
PointSetsContainerType m_FixedPointSets
 
FixedImagesContainerType m_FixedSmoothImages
 
bool m_IsConverged
 
MetricPointer m_Metric
 
MetricSamplingPercentageArrayType m_MetricSamplingPercentagePerLevel
 
MetricSamplingStrategyType m_MetricSamplingStrategy
 
MovingImageMasksContainerType m_MovingImageMasks
 
PointSetsContainerType m_MovingPointSets
 
MovingImagesContainerType m_MovingSmoothImages
 
SizeValueType m_NumberOfFixedObjects
 
SizeValueType m_NumberOfLevels
 
SizeValueType m_NumberOfMetrics
 
SizeValueType m_NumberOfMovingObjects
 
OptimizerPointer m_Optimizer
 
OptimizerWeightsType m_OptimizerWeights
 
bool m_OptimizerWeightsAreIdentity
 
OutputTransformPointer m_OutputTransform
 
int m_RandomSeed
 
bool m_ReseedIterator
 
std::vector
< ShrinkFactorsPerDimensionContainerType
m_ShrinkFactorsPerLevel
 
bool m_SmoothingSigmasAreSpecifiedInPhysicalUnits
 
SmoothingSigmasArrayType m_SmoothingSigmasPerLevel
 
TransformParametersAdaptorsContainerType m_TransformParametersAdaptorsPerLevel
 
VirtualImagePointer m_VirtualDomainImage
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
std::atomic< int > m_ReferenceCount
 

Private Attributes

RealType m_GaussianSmoothingVarianceForTheTotalField { 0.5 }
 
RealType m_GaussianSmoothingVarianceForTheUpdateField { 3.0 }
 

Member Typedef Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::CompositeTransformType = typename Superclass::CompositeTransformType

Definition at line 136 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ConstPointer = SmartPointer<const Self>

Definition at line 81 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DecoratedOutputTransformPointer = typename DecoratedOutputTransformType::Pointer

Definition at line 140 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DecoratedOutputTransformType = typename Superclass::DecoratedOutputTransformType

Definition at line 139 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DerivativeType = typename OutputTransformType::DerivativeType

Definition at line 130 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DerivativeValueType = typename DerivativeType::ValueType

Definition at line 131 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DisplacementFieldPointer = typename DisplacementFieldType::Pointer

Definition at line 133 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DisplacementFieldTransformPointer = typename DisplacementFieldTransformType::Pointer

Definition at line 143 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DisplacementFieldTransformType = DisplacementFieldTransform<RealType, ImageDimension>

Definition at line 142 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DisplacementFieldType = typename OutputTransformType::DisplacementFieldType

Definition at line 132 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::DisplacementVectorType = typename DisplacementFieldType::PixelType

Definition at line 134 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::FixedImageMasksContainerType = typename Superclass::FixedImageMasksContainerType

Definition at line 112 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::FixedImageMaskType = typename Superclass::FixedImageMaskType

Definition at line 110 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::FixedImagePointer = typename FixedImageType::Pointer

Definition at line 94 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::FixedImagesContainerType = typename Superclass::FixedImagesContainerType

Definition at line 95 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::FixedImageType = TFixedImage

Input type alias for the images.

Definition at line 93 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::FixedMaskImageType = typename ImageMaskSpatialObjectType::ImageType

Definition at line 111 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ImageMaskSpatialObjectType = ImageMaskSpatialObject<ImageDimension>

Definition at line 109 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ImageMetricPointer = typename ImageMetricType::Pointer

Definition at line 106 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ImageMetricType = typename Superclass::ImageMetricType

Metric and transform type alias

Definition at line 105 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::InitialTransformType = typename Superclass::InitialTransformType

Definition at line 126 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MeasureType = typename ImageMetricType::MeasureType

Definition at line 107 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MetricPointer = typename MetricType::Pointer

Definition at line 123 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MetricType = typename Superclass::MetricType

Definition at line 122 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MovingImageMasksContainerType = typename Superclass::MovingImageMasksContainerType

Definition at line 115 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MovingImageMaskType = typename Superclass::MovingImageMaskType

Definition at line 113 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MovingImagePointer = typename MovingImageType::Pointer

Definition at line 97 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MovingImagesContainerType = typename Superclass::MovingImagesContainerType

Definition at line 98 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MovingImageType = TMovingImage

Definition at line 96 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MovingMaskImageType = typename ImageMaskSpatialObjectType::ImageType

Definition at line 114 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::MultiMetricType = typename Superclass::MultiMetricType

Definition at line 121 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::NumberOfIterationsArrayType = Array<SizeValueType>

Definition at line 145 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::OutputTransformPointer = typename OutputTransformType::Pointer

Definition at line 128 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::OutputTransformType = TOutputTransform

Definition at line 127 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::Pointer = SmartPointer<Self>

Definition at line 80 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::PointSetMetricType = typename Superclass::PointSetMetricType

Definition at line 124 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::PointSetPointer = typename PointSetType::Pointer

Definition at line 101 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::PointSetsContainerType = typename Superclass::PointSetsContainerType

Definition at line 102 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::PointSetType = typename Superclass::PointSetType

Definition at line 100 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::RealType = typename OutputTransformType::ScalarType

Definition at line 129 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::Self = SyNImageRegistrationMethod

Standard class type aliases.

Definition at line 77 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::Superclass = ImageRegistrationMethodv4<TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet>

Definition at line 79 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::TransformBaseType = typename CompositeTransformType::TransformType

Definition at line 137 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::VirtualImageBaseConstPointer = typename Superclass::VirtualImageBaseConstPointer

Definition at line 119 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::VirtualImageBaseType = typename Superclass::VirtualImageBaseType

Definition at line 118 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
using itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::VirtualImageType = typename Superclass::VirtualImageType

Definition at line 117 of file itkSyNImageRegistrationMethod.h.

Constructor & Destructor Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SyNImageRegistrationMethod ( )
protected
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::~SyNImageRegistrationMethod ( )
overrideprotecteddefault

Member Function Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual DisplacementFieldPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ComputeMetricGradientField ( const FixedImagesContainerType  ,
const PointSetsContainerType  ,
const TransformBaseType ,
const MovingImagesContainerType  ,
const PointSetsContainerType  ,
const TransformBaseType ,
const FixedImageMasksContainerType  ,
const MovingImageMasksContainerType  ,
MeasureType  
)
protectedvirtual
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual DisplacementFieldPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ComputeUpdateField ( const FixedImagesContainerType  ,
const PointSetsContainerType  ,
const TransformBaseType ,
const MovingImagesContainerType  ,
const PointSetsContainerType  ,
const TransformBaseType ,
const FixedImageMasksContainerType  ,
const MovingImageMasksContainerType  ,
MeasureType  
)
protectedvirtual
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual::itk::LightObject::Pointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual DisplacementFieldPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GaussianSmoothDisplacementField ( const DisplacementFieldType ,
const RealType   
)
protectedvirtual
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GenerateData ( )
overrideprotectedvirtual
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual bool itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetAverageMidPointGradients ( ) const
virtual

Allow the user to average the gradients in the mid-point domain. Default false. One might choose to do this to further reduce bias.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetConvergenceThreshold ( ) const
virtual

Set/Get the convergence threshold

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual unsigned int itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetConvergenceWindowSize ( ) const
virtual

Set/Get the convergence window size

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual bool itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetDownsampleImagesForMetricDerivatives ( ) const
virtual

Let the user control whether we compute metric derivatives in the downsampled or full-res space. The default is 'true' — classic SyN — but there may be advantages to the other approach. Classic SyN did not have this possibility. This implementation will let us explore the question.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual const OutputTransformType* itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetFixedToMiddleTransform ( ) const
virtual

Get modifiable FixedToMiddle and MovingToMidle transforms to save the current state of the registration.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual const RealType& itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetGaussianSmoothingVarianceForTheTotalField ( ) const
virtual

Get/Set the Gaussian smoothing variance for the total field.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual const RealType& itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetGaussianSmoothingVarianceForTheUpdateField ( ) const
virtual

Get/Set the Gaussian smoothing variance for the update field.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetLearningRate ( ) const
virtual

Set/Get the learning rate.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual OutputTransformType* itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetModifiableFixedToMiddleTransform ( )
virtual

Get modifiable FixedToMiddle and MovingToMidle transforms to save the current state of the registration.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual OutputTransformType* itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetModifiableMovingToMiddleTransform ( )
virtual

Get modifiable FixedToMiddle and MovingToMidle transforms to save the current state of the registration.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual const OutputTransformType* itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetMovingToMiddleTransform ( ) const
virtual

Get modifiable FixedToMiddle and MovingToMidle transforms to save the current state of the registration.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual const char* itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetNameOfClass ( ) const
virtual
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual NumberOfIterationsArrayType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::GetNumberOfIterationsPerLevel ( ) const
virtual

Set/Get the number of iterations per level.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::InitializeRegistrationAtEachLevel ( const SizeValueType  )
overrideprotectedvirtual

Initialize by setting the interconnects between the components. Need to override in the SyN class since we need to "adapt" the m_InverseTransform

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual DisplacementFieldPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::InvertDisplacementField ( const DisplacementFieldType ,
const DisplacementFieldType = nullptr 
)
protectedvirtual
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
static Pointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::New ( )
static

Method for creation through the object factory.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageRegistrationMethodv4< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual DisplacementFieldPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ScaleUpdateField ( const DisplacementFieldType )
protectedvirtual
template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetAverageMidPointGradients ( bool  _arg)
virtual

Allow the user to average the gradients in the mid-point domain. Default false. One might choose to do this to further reduce bias.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetConvergenceThreshold ( RealType  _arg)
virtual

Set/Get the convergence threshold

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetConvergenceWindowSize ( unsigned int  _arg)
virtual

Set/Get the convergence window size

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetDownsampleImagesForMetricDerivatives ( bool  _arg)
virtual

Let the user control whether we compute metric derivatives in the downsampled or full-res space. The default is 'true' — classic SyN — but there may be advantages to the other approach. Classic SyN did not have this possibility. This implementation will let us explore the question.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetFixedToMiddleTransform ( OutputTransformType _arg)
virtual

Set FixedToMiddle and MovingToMidle transforms to restore the registration from a saved state.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetGaussianSmoothingVarianceForTheTotalField ( RealType  _arg)
virtual

Get/Set the Gaussian smoothing variance for the total field.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetGaussianSmoothingVarianceForTheUpdateField ( RealType  _arg)
virtual

Get/Set the Gaussian smoothing variance for the update field.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetLearningRate ( RealType  _arg)
virtual

Set/Get the learning rate.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetMovingToMiddleTransform ( OutputTransformType _arg)
virtual

Set FixedToMiddle and MovingToMidle transforms to restore the registration from a saved state.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::SetNumberOfIterationsPerLevel ( NumberOfIterationsArrayType  _arg)
virtual

Set/Get the number of iterations per level.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
virtual void itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::StartOptimization ( )
protectedvirtual

Member Data Documentation

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
constexpr unsigned int itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::ImageDimension = TFixedImage::ImageDimension
static

ImageDimension constants

Definition at line 87 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
bool itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_AverageMidPointGradients { false }
protected

Definition at line 245 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_ConvergenceThreshold { static_cast<RealType>(1.0e-6) }
protected

Definition at line 240 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
unsigned int itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_ConvergenceWindowSize { 10 }
protected

Definition at line 241 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
bool itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_DownsampleImagesForMetricDerivatives { true }
protected

Definition at line 244 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
OutputTransformPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_FixedToMiddleTransform { nullptr }
protected

Definition at line 238 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_GaussianSmoothingVarianceForTheTotalField { 0.5 }
private

Definition at line 249 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_GaussianSmoothingVarianceForTheUpdateField { 3.0 }
private

Definition at line 248 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
RealType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_LearningRate { 0.25 }
protected

Definition at line 235 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
OutputTransformPointer itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_MovingToMiddleTransform { nullptr }
protected

Definition at line 237 of file itkSyNImageRegistrationMethod.h.

template<typename TFixedImage , typename TMovingImage , typename TOutputTransform = DisplacementFieldTransform<double, TFixedImage::ImageDimension>, typename TVirtualImage = TFixedImage, typename TPointSet = PointSet<unsigned int, TFixedImage::ImageDimension>>
NumberOfIterationsArrayType itk::SyNImageRegistrationMethod< TFixedImage, TMovingImage, TOutputTransform, TVirtualImage, TPointSet >::m_NumberOfIterationsPerLevel
protected

Definition at line 243 of file itkSyNImageRegistrationMethod.h.


The documentation for this class was generated from the following file: