itkUpdateMalcolmSparseLevelSet.h

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
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 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/

#ifndef itkUpdateMalcolmSparseLevelSet_h
#define itkUpdateMalcolmSparseLevelSet_h

#include "itkImage.h"
#include "itkDiscreteLevelSetImage.h"
#include "itkMalcolmSparseLevelSetImage.h"
#include "itkImageRegionIteratorWithIndex.h"
#include "itkShapedNeighborhoodIterator.h"
#include "itkNeighborhoodAlgorithm.h"
#include "itkLabelMapToLabelImageFilter.h"
#include "itkLabelImageToLabelMapFilter.h"

namespace itk
{
template< unsigned int VDimension,
          typename TEquationContainer >
class ITK_TEMPLATE_EXPORT UpdateMalcolmSparseLevelSet : public Object
{
public:
  ITK_DISALLOW_COPY_AND_ASSIGN(UpdateMalcolmSparseLevelSet);

  using Self = UpdateMalcolmSparseLevelSet;
  using Pointer = SmartPointer< Self >;
  using ConstPointer = SmartPointer< const Self >;
  using Superclass = Object;

  itkNewMacro( Self );

  itkTypeMacro( UpdateMalcolmSparseLevelSet, Object );

  static constexpr unsigned int ImageDimension = VDimension;

  using LevelSetType = MalcolmSparseLevelSetImage< ImageDimension >;
  using LevelSetPointer = typename LevelSetType::Pointer;
  using LevelSetInputType = typename LevelSetType::InputType;
  using LevelSetOutputType = typename LevelSetType::OutputType;
  using LevelSetOffsetType = typename LevelSetType::OffsetType;

  using LevelSetLabelMapType = typename LevelSetType::LabelMapType;
  using LevelSetLabelMapPointer = typename LevelSetType::LabelMapPointer;

  using LevelSetLabelObjectType = typename LevelSetType::LabelObjectType;
  using LevelSetLabelObjectPointer = typename LevelSetType::LabelObjectPointer;
  using LevelSetLabelObjectLengthType = typename LevelSetType::LabelObjectLengthType;
  using LevelSetLabelObjectLineType = typename LevelSetType::LabelObjectLineType;

  using LevelSetLayerType = typename LevelSetType::LayerType;
  using LevelSetLayerIterator = typename LevelSetType::LayerIterator;
  using LevelSetLayerConstIterator = typename LevelSetType::LayerConstIterator;
  using LevelSetOutputRealType = typename LevelSetType::OutputRealType;

  using LevelSetLayerMapType = typename LevelSetType::LayerMapType;
  using LevelSetLayerMapIterator = typename LevelSetType::LayerMapIterator;
  using LevelSetLayerMapConstIterator = typename LevelSetType::LayerMapConstIterator;

  using EquationContainerType = TEquationContainer;
  using EquationContainerPointer = typename EquationContainerType::Pointer;
  using TermContainerPointer = typename EquationContainerType::TermContainerPointer;

  itkGetModifiableObjectMacro(OutputLevelSet, LevelSetType );

  void Update();

  itkSetObjectMacro( InputLevelSet, LevelSetType );
  itkGetModifiableObjectMacro(InputLevelSet, LevelSetType );

  itkGetMacro( RMSChangeAccumulator, LevelSetOutputRealType );

  itkSetObjectMacro( EquationContainer, EquationContainerType );
  itkGetModifiableObjectMacro(EquationContainer, EquationContainerType );

  itkSetMacro( CurrentLevelSetId, IdentifierType );
  itkGetMacro( CurrentLevelSetId, IdentifierType );

protected:
  UpdateMalcolmSparseLevelSet();
  ~UpdateMalcolmSparseLevelSet() override = default;

  // output
  LevelSetPointer   m_OutputLevelSet;

  LevelSetLayerType m_Update;

  IdentifierType           m_CurrentLevelSetId;
  LevelSetOutputRealType   m_RMSChangeAccumulator;
  EquationContainerPointer m_EquationContainer;

  using LabelImageType = Image< int8_t, ImageDimension >;
  using LabelImagePointer = typename LabelImageType::Pointer;

  LabelImagePointer m_InternalImage;

  using NeighborhoodIteratorType = ShapedNeighborhoodIterator< LabelImageType >;

  bool m_IsUsingUnPhasedPropagation{ true };

  void FillUpdateContainer();

  void EvolveWithUnPhasedPropagation();

  void EvolveWithPhasedPropagation( LevelSetLayerType& ioList,
                                    LevelSetLayerType& ioUpdate,
                                    const bool& iContraction );

  void CompactLayersToSinglePixelThickness();

private:
  // input
  LevelSetPointer   m_InputLevelSet;

  LevelSetOffsetType m_Offset;

  using NodePairType = std::pair< LevelSetInputType, LevelSetOutputType >;

};
}

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkUpdateMalcolmSparseLevelSet.hxx"
#endif

#endif // itkUpdateMalcolmSparseLevelSet_h