itkESMDemonsRegistrationFunction.h

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/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkESMDemonsRegistrationFunction_h
#define itkESMDemonsRegistrationFunction_h
 
#include "itkPDEDeformableRegistrationFunction.h"
#include "itkCentralDifferenceImageFunction.h"
#include "itkWarpImageFilter.h"
#include "ITKPDEDeformableRegistrationExport.h"
#include <mutex>
 
namespace itk
{
class ESMDemonsRegistrationFunctionEnums
{
public:
  enum class Gradient : uint8_t
  {
    Symmetric = 0,
    Fixed = 1,
    WarpedMoving = 2,
    MappedMoving = 3
  };
};
// Define how to print enumeration
extern ITKPDEDeformableRegistration_EXPORT std::ostream &
                                           operator<<(std::ostream & out, const ESMDemonsRegistrationFunctionEnums::Gradient value);
template <typename TFixedImage, typename TMovingImage, typename TDisplacementField>
class ITK_TEMPLATE_EXPORT ESMDemonsRegistrationFunction
  : public PDEDeformableRegistrationFunction<TFixedImage, TMovingImage, TDisplacementField>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(ESMDemonsRegistrationFunction);
 
  using Self = ESMDemonsRegistrationFunction;
  using Superclass = PDEDeformableRegistrationFunction<TFixedImage, TMovingImage, TDisplacementField>;
 
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
 
  itkNewMacro(Self);
 
  itkTypeMacro(ESMDemonsRegistrationFunction, PDEDeformableRegistrationFunction);
 
  using MovingImageType = typename Superclass::MovingImageType;
  using MovingImagePointer = typename Superclass::MovingImagePointer;
  using MovingPixelType = typename MovingImageType::PixelType;
 
  using FixedImageType = typename Superclass::FixedImageType;
  using FixedImagePointer = typename Superclass::FixedImagePointer;
  using IndexType = typename FixedImageType::IndexType;
  using SizeType = typename FixedImageType::SizeType;
  using SpacingType = typename FixedImageType::SpacingType;
  using DirectionType = typename FixedImageType::DirectionType;
 
  using DisplacementFieldType = typename Superclass::DisplacementFieldType;
  using DisplacementFieldTypePointer = typename Superclass::DisplacementFieldTypePointer;
 
  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;
 
  using PixelType = typename Superclass::PixelType;
  using RadiusType = typename Superclass::RadiusType;
  using NeighborhoodType = typename Superclass::NeighborhoodType;
  using FloatOffsetType = typename Superclass::FloatOffsetType;
  using TimeStepType = typename Superclass::TimeStepType;
 
  using CoordRepType = double;
  using InterpolatorType = InterpolateImageFunction<MovingImageType, CoordRepType>;
  using InterpolatorPointer = typename InterpolatorType::Pointer;
  using PointType = typename InterpolatorType::PointType;
  using DefaultInterpolatorType = LinearInterpolateImageFunction<MovingImageType, CoordRepType>;
 
  using WarperType = WarpImageFilter<MovingImageType, MovingImageType, DisplacementFieldType>;
 
  using WarperPointer = typename WarperType::Pointer;
 
  using CovariantVectorType = CovariantVector<double, Self::ImageDimension>;
 
  using GradientCalculatorType = CentralDifferenceImageFunction<FixedImageType>;
  using GradientCalculatorPointer = typename GradientCalculatorType::Pointer;
 
  using MovingImageGradientCalculatorType = CentralDifferenceImageFunction<MovingImageType, CoordRepType>;
  using MovingImageGradientCalculatorPointer = typename MovingImageGradientCalculatorType::Pointer;
 
  void
  SetMovingImageInterpolator(InterpolatorType * ptr)
  {
    m_MovingImageInterpolator = ptr;
    m_MovingImageWarper->SetInterpolator(ptr);
  }
 
  InterpolatorType *
  GetMovingImageInterpolator()
  {
    return m_MovingImageInterpolator;
  }
 
  TimeStepType
  ComputeGlobalTimeStep(void * itkNotUsed(GlobalData)) const override
  {
    return m_TimeStep;
  }
 
  void *
  GetGlobalDataPointer() const override
  {
    auto * global = new GlobalDataStruct();
 
    global->m_SumOfSquaredDifference = 0.0;
    global->m_NumberOfPixelsProcessed = 0L;
    global->m_SumOfSquaredChange = 0;
    return global;
  }
 
  void
  ReleaseGlobalDataPointer(void * gd) const override;
 
  void
  InitializeIteration() override;
 
  PixelType
  ComputeUpdate(const NeighborhoodType & it, void * gd, const FloatOffsetType & offset = FloatOffsetType(0.0)) override;
 
  virtual double
  GetMetric() const
  {
    return m_Metric;
  }
 
  virtual const double &
  GetRMSChange() const
  {
    return m_RMSChange;
  }
 
  virtual void
  SetIntensityDifferenceThreshold(double);
 
  virtual double
  GetIntensityDifferenceThreshold() const;
 
  virtual void
  SetMaximumUpdateStepLength(double sm)
  {
    this->m_MaximumUpdateStepLength = sm;
  }
 
  virtual double
  GetMaximumUpdateStepLength() const
  {
    return this->m_MaximumUpdateStepLength;
  }
 
  using GradientEnum = ESMDemonsRegistrationFunctionEnums::Gradient;
#if !defined(ITK_LEGACY_REMOVE)
 
  static constexpr GradientEnum Symmetric = GradientEnum::Symmetric;
  static constexpr GradientEnum Fixed = GradientEnum::Fixed;
  static constexpr GradientEnum WarpedMoving = GradientEnum::WarpedMoving;
  static constexpr GradientEnum MappedMoving = GradientEnum::MappedMoving;
#endif
 
  virtual void
  SetUseGradientType(GradientEnum gtype)
  {
    m_UseGradientType = gtype;
  }
  virtual GradientEnum
  GetUseGradientType() const
  {
    return m_UseGradientType;
  }
 
protected:
  ESMDemonsRegistrationFunction();
  ~ESMDemonsRegistrationFunction() override = default;
  void
  PrintSelf(std::ostream & os, Indent indent) const override;
 
  using FixedImageNeighborhoodIteratorType = ConstNeighborhoodIterator<FixedImageType>;
 
  struct GlobalDataStruct
  {
    double        m_SumOfSquaredDifference;
    SizeValueType m_NumberOfPixelsProcessed;
    double        m_SumOfSquaredChange;
  };
 
private:
  PointType     m_FixedImageOrigin;
  SpacingType   m_FixedImageSpacing;
  DirectionType m_FixedImageDirection;
  double        m_Normalizer;
 
  GradientCalculatorPointer m_FixedImageGradientCalculator;
 
  MovingImageGradientCalculatorPointer m_MappedMovingImageGradientCalculator;
 
  GradientEnum m_UseGradientType;
 
  InterpolatorPointer m_MovingImageInterpolator;
 
  WarperPointer m_MovingImageWarper;
 
  MovingImageType * m_MovingImageWarperOutput;
 
  TimeStepType m_TimeStep;
 
  double m_DenominatorThreshold;
 
  double m_IntensityDifferenceThreshold;
 
  double m_MaximumUpdateStepLength;
 
  mutable double        m_Metric;
  mutable double        m_SumOfSquaredDifference;
  mutable SizeValueType m_NumberOfPixelsProcessed;
  mutable double        m_RMSChange;
  mutable double        m_SumOfSquaredChange;
 
  mutable std::mutex m_MetricCalculationLock;
};
} // end namespace itk
 
#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkESMDemonsRegistrationFunction.hxx"
#endif
 
#endif