itkThresholdMaximumConnectedComponentsImageFilter.h

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/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkThresholdMaximumConnectedComponentsImageFilter_h
#define itkThresholdMaximumConnectedComponentsImageFilter_h
 
#include "itkBinaryThresholdImageFilter.h"
#include "itkConnectedComponentImageFilter.h"
#include "itkRelabelComponentImageFilter.h"
#include "itkMinimumMaximumImageCalculator.h"
#include "itkCastImageFilter.h"
 
 
namespace itk
{
template <typename TInputImage, typename TOutputImage = TInputImage>
class ITK_TEMPLATE_EXPORT ThresholdMaximumConnectedComponentsImageFilter
  : public ImageToImageFilter<TInputImage, TOutputImage>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(ThresholdMaximumConnectedComponentsImageFilter);
 
  using Self = ThresholdMaximumConnectedComponentsImageFilter;
  using Superclass = ImageToImageFilter<TInputImage, TOutputImage>;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
 
  itkNewMacro(Self);
 
  itkTypeMacro(ThresholdMaximumConnectedComponentsImageFilter, ImageToImageFilter);
 
  using PixelType = typename TInputImage::PixelType;
  using OutputPixelType = typename TOutputImage::PixelType;
 
  itkConceptMacro(PixelTypeComparable, (Concept::Comparable<PixelType>));
 
  itkSetMacro(MinimumObjectSizeInPixels, unsigned int);
  itkGetConstMacro(MinimumObjectSizeInPixels, unsigned int);
 
  itkSetMacro(InsideValue, OutputPixelType);
  itkSetMacro(OutsideValue, OutputPixelType);
  itkSetMacro(UpperBoundary, PixelType);
  itkGetConstMacro(InsideValue, OutputPixelType);
  itkGetConstMacro(OutsideValue, OutputPixelType);
  itkGetConstMacro(UpperBoundary, PixelType);
 
  itkGetConstMacro(NumberOfObjects, SizeValueType);
 
  itkGetConstMacro(ThresholdValue, PixelType);
 
  using InputImageType = TInputImage;
  using InputImagePointer = typename InputImageType::ConstPointer;
  using InputImageRegionType = typename InputImageType::RegionType;
  using InputImagePixelType = typename InputImageType::PixelType;
 
  using OutputImageType = TOutputImage;
  using OutputImagePointer = typename OutputImageType::Pointer;
  using OutputImageRegionType = typename OutputImageType::RegionType;
  using OutputImagePixelType = typename OutputImageType::PixelType;
 
protected:
  ThresholdMaximumConnectedComponentsImageFilter();
  ~ThresholdMaximumConnectedComponentsImageFilter() override = default;
  void
  PrintSelf(std::ostream & os, Indent indent) const override;
 
  void
  GenerateData() override;
 
  SizeValueType
  ComputeConnectedComponents();
 
private:
  using FilterPixelType = unsigned int;
 
  static constexpr unsigned int ImageDimension = TInputImage::ImageDimension;
 
  using FilterImageType = itk::Image<FilterPixelType, Self::ImageDimension>;
 
  using FilterImagePointer = typename FilterImageType::Pointer;
 
  //
  // Binary Threshold Filter
  //
  using ThresholdFilterType = BinaryThresholdImageFilter<InputImageType, OutputImageType>;
 
  //
  // Connected Components Filter
  //
  using ConnectedFilterType = ConnectedComponentImageFilter<OutputImageType, FilterImageType>;
 
  //
  // Relabeled Components Filter
  //
  using RelabelFilterType = RelabelComponentImageFilter<FilterImageType, FilterImageType>;
 
  //
  // Minimum maximum calculator
  //
  using MinMaxCalculatorType = MinimumMaximumImageCalculator<InputImageType>;
 
  //
  // Declare member variables for the filters of the internal pipeline.
  //
  typename ThresholdFilterType::Pointer m_ThresholdFilter;
  typename ConnectedFilterType::Pointer m_ConnectedComponent;
 
  typename RelabelFilterType::Pointer m_LabeledComponent;
 
  typename MinMaxCalculatorType::Pointer m_MinMaxCalculator;
 
  // Variables defined by the user
  unsigned int m_MinimumObjectSizeInPixels;
 
  // Binary threshold variables
  OutputPixelType m_OutsideValue;
  OutputPixelType m_InsideValue;
 
  PixelType m_LowerBoundary;
  PixelType m_UpperBoundary;
 
  // Filter variables
  PixelType     m_ThresholdValue;
  SizeValueType m_NumberOfObjects;
};
} // end namespace itk
 
#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkThresholdMaximumConnectedComponentsImageFilter.hxx"
#endif
 
#endif