BinaryMask3DMeshSource
Header, 314
Instantiation, 314
SetInput, 315
BSplineInterpolateImageFunction, 560
BSplineTransform, 620
Instantiation, 607, 616, 618, 620
New, 607, 616, 618, 620
Casting Images, 90
CenteredTransformInitializer
GeometryOn(), 428
MomentsOn(), 428
CenteredTransformInitializer
GeometryOn(), 399
MomentsOn(), 399
Complex images
Instantiation, 32
Reading, 32
Writing, 32
CreateStructuringElement()
itk::BinaryBallStructuringElement, 133, 138
DICOM, 43
Changing Headers, 62
Dictionary, 55
GDCM, 55
Header, 55, 59
Introduction, 43
Printing Tags, 55, 59
Series, 43
Standard, 43
Tags, 55, 59
Dicom
HIPPA, 52
Distance Map
itk::SignedDanielssonDistanceMapImageFilter, 236
EllipseSpatialObject
Instantiation, 668
Entropy
Images, 920
What’s wrong in images, 918
GDCM
Dictionary, 55
GDCMImageIO
header, 55
GDCMSeriesFileNames
GetOutputFileNames(), 54
SetOutputDirectory(), 54
GetMetaDataDictionary()
ImageIOBase, 56
GroupSpatialObject
Instantiation, 668
HIPAA
Dicom, 52
Privacy, 52
Image
Amount of information, 920
Entropy, 920
Image Series
Reading, 36
Writing, 36
ImageToSpatialObjectMetric
GetValue(), 667
ImageFileRead
Vector images, 30
ImageFileWriter
Vector images, 28
ImageIO
GetMetaDataDictionary(), 61
ImageIOBase
GetMetaDataDictionary(), 56
ImageSeriesWriter
SetFileNames(), 54
Isosurface extraction
Mesh, 314
itk::AddImageFilter
Instantiation, 119
itk::AffineTransform, 441, 548
Composition, 287
header, 241, 441
Image Registration, 472
Instantiation, 442, 474
instantiation, 242, 288
New(), 288, 442
Pointer, 288, 442
resampling, 288
Rotate2D(), 287, 292
SetIdentity(), 259
Translate(), 249, 287, 292, 293
itk::AmoebaOptimizer, 590
itk::ANTSNeighborhoodCorrelationImageToImageMetricv4, 584
itk::BilateralImageFilter, 202
header, 202
instantiation, 202
New(), 202
Pointer, 202
SetDomainSigma(), 203
SetRangeSigma(), 203
itk::BinaryThresholdImageFilter
Header, 70
Instantiation, 70
SetInput(), 71
SetInsideValue(), 71
SetOutsideValue(), 71
itk::BinaryBallStructuringElement
CreateStructuringElement(), 133, 138
SetRadius(), 133, 138
itk::BinaryDilateImageFilter
header, 132
New(), 133
Pointer, 133
SetDilateValue(), 134
SetKernel(), 133
Update(), 134
itk::BinaryErodeImageFilter
header, 132
New(), 133
Pointer, 133
SetErodeValue(), 134
SetKernel(), 133
Update(), 134
itk::BinaryMedianImageFilter, 142
GetOutput(), 143
header, 142
instantiation, 143
Neighborhood, 143
New(), 143
Pointer, 143
Radius, 143
SetInput(), 143
itk::BinomialBlurImageFilter, 164
itk::BinomialBlurImageFilter
header, 164
instantiation, 164
New(), 164
Pointer, 164
SetInput(), 164
SetRepetitions(), 164
Update(), 164
itk::BSplineDeformableTransform, 552
itk::BSplineInterpolateImageFunction, 561
itk::BSplineTransform, 606, 615, 617
DeformableRegistration, 606, 615, 617
header, 606, 615, 617
itk::BSplineTransformParametersAdaptor, 615
itk::CannySegmentationLevelSetImageFilter, 819
GenerateSpeedImage(), 828
GetSpeedImage(), 828
SetAdvectionScaling(), 823
itk::CannyEdgeDetectionImageFilter, 87
header, 87
itk::CastImageFilter, 90
header, 90
instantiation, 216, 221
New(), 91, 216, 221
Pointer, 91, 216, 221
SetInput(), 91
Update(), 91
itk::CenteredRigid2DTransform, 522
itk::CenteredTransformInitializer
header, 427
In 3D, 427
Instantiation, 428
New(), 428
SmartPointer, 428
itk::ChangeInformationImageFilter
CenterImageOn(), 841
itk::ComplexToRealImageFilter, 309
itk::ConfidenceConnectedImageFilter, 710
header, 710
SetInitialNeighborhoodRadius(), 713
SetMultiplier(), 712
SetNumberOfIterations(), 713
SetReplaceValue(), 713
SetSeed(), 713
itk::ConjugateGradientLineSearchOptimizerv4, 590
itk::ConnectedThresholdImageFilter, 688
header, 688
SetLower(), 690
SetReplaceValue(), 690
SetSeed(), 690
SetUpper(), 690
itk::CorrelationImageToImageMetricv4, 578
itk::CovariantVector
Concept, 498
itk::CurvatureAnisotropicDiffusionImageFilter, 183
header, 183
instantiation, 183
New(), 183
Pointer, 183
SetConductanceParameter(), 184
SetNumberOfIterations(), 184
SetTimeStep(), 184
Update(), 184
itk::CurvatureFlowImageFilter, 188
header, 188
instantiation, 188
New(), 188
Pointer, 188
SetNumberOfIterations(), 189
SetTimeStep(), 189
Update(), 189
itk::DanielssonDistanceMapImageFilter
GetOutput(), 229
GetVoronoiMap(), 229
Header, 228
Instantiation, 228
instantiation, 228
New(), 228
Pointer, 228
SetInput(), 229
itk::DataObjectDecorator
Get(), 333
Use in Registration, 333
itk::DemonsImageToImageMetricv4, 584
itk::DemonsRegistrationFilter, 626
SetFixedImage(), 627
SetMovingImage(), 627
SetNumberOfIterations(), 627
SetStandardDeviations(), 627
itk::DerivativeImageFilter, 109
GetOutput(), 110
header, 109
instantiation, 109
New(), 109
Pointer, 109
SetDirection(), 109
SetInput(), 110
SetOrder(), 109
itk::DiscreteGaussianImageFilter, 159
header, 159
instantiation, 160
New(), 160
Pointer, 160
SetMaximumKernelWidth(), 160
SetVariance(), 160
Update(), 160
itk::ElasticBodyReciprocalSplineKernelTransform, 555
itk::ElasticBodySplineKernelTransform, 555
itk::EllipseSpatialObject
header, 665
SetRadius(), 668
itk::Euler2DTransform, 374, 398, 518
header, 374, 398
Instantiation, 374, 399
New(), 375, 399
Pointer, 375, 399
SmartPointer, 399
itk::Euler3DTransform, 539
itk::EventObject
CheckEvent, 351
itk::ExhaustiveOptimizerv4, 590
itk::ExtractImageFilter
header, 23
SetExtractionRegion(), 25
itk::FastMarchingImageFilter
Multiple seeds, 764, 782
NodeContainer, 765, 782
Nodes, 765, 782
NodeType, 765, 782
Seed initialization, 765, 782
SetStoppingValue(), 765
SetTrialPoints(), 765, 782
itk::FFTWForwardFFTImageFilter, 308, 311
itk::FileImageReader
GetOutput(), 71, 85, 698
itk::FlipImageFilter, 237
GetOutput(), 237
header, 237
instantiation, 237
Neighborhood, 237
New(), 237
Pointer, 237
Radius, 237
SetInput(), 237
itk::FloodFillIterator
In Region Growing, 688, 710
itk::ForwardFFTImageFilter, 308, 311
itk::GDCMImageIO
header, 48
itk::GDCMSeriesFileNames
GetFileNames(), 50
header, 48
SetDirectory(), 50
itk::GeodesicActiveContourLevelSetImageFilter
SetAdvectionScaling(), 797
SetCurvatureScaling(), 797
SetPropagationScaling(), 797
itk::GeodesicActiveContourShapePriorLevelSetImageFilter
Monitoring, 840
SetAdvectionScaling(), 842
SetCurvatureScaling(), 842
SetPropagationScaling(), 842
itk::GradientAnisotropicDiffusionImageFilter, 178
header, 178
instantiation, 178
New(), 178
Pointer, 178
SetConductanceParameter(), 179
SetNumberOfIterations(), 179
SetTimeStep(), 179
Update(), 179
itk::GradientDescentLineSearchOptimizerv4, 590
itk::GradientDescentOptimizerv4, 590
itk::GradientDescentOptimizerv4Template
GetCurrentIteration(), 329
SetLearningRate(), 327
SetMinimumStepLength(), 327
SetNumberOfIterations(), 328
SetRelaxationFactor(), 327
itk::GradientMagnitudeRecursiveGaussianImageFilter, 104
header, 104
Instantiation, 105
New(), 105
Pointer, 105
SetSigma(), 105, 764, 781
Update(), 106
itk::GradientRecursiveGaussianImageFilter
header, 28
itk::GradientMagnitudeImageFilter, 100
header, 100
instantiation, 101
New(), 101
Pointer, 101
Update(), 101
itk::GrayscaleDilateImageFilter
header, 137
New(), 138
Pointer, 138
SetKernel(), 138
Update(), 138
itk::GrayscaleErodeImageFilter
header, 137
New(), 138
Pointer, 138
SetKernel(), 138
Update(), 138
itk::GroupSpatialObject
header, 665
New(), 669
Pointer, 669
itk::HistogramMatchingImageFilter, 632
SetNumberOfHistogramLevels(), 633
SetNumberOfMatchPoints(), 633
SetInput(), 633
SetReferenceImage(), 633
SetSourceImage(), 633
ThresholdAtMeanIntensityOn(), 633
itk::HistogramMatchingImageFilter, 609, 626
SetInput(), 610, 626
SetNumberOfHistogramLevels(), 610, 626
SetNumberOfMatchPoints(), 610, 626
SetReferenceImage(), 610, 626
SetSourceImage(), 610, 626
ThresholdAtMeanIntensityOn(), 610, 626
itk::IdentityTransform, 505
itk::Image
Header, 323
Instantiation, 323
itk::ImageRegistrationMethod
Multi-Modality, 356
itk::ImageRegistrationMethodv4
SetMovingInitialTransform(), 473
SetNumberOfLevels(), 463
SetShrinkFactorsPerLevel(), 463
SetSmoothingSigmasPerLevel(), 463
itk::ImageToImageMetricv4, 570
GetDerivatives(), 570
GetValue(), 570
GetValueAndDerivatives(), 570
itk::ImageToSpatialObjectMetric
header, 665
Instantiation, 671
itk::ImageToSpatialObjectRegistrationMethod
Instantiation, 671
New(), 671
Pointer, 671
SetFixedImage(), 673
SetInterpolator(), 673
SetMetric(), 673
SetMovingSpatialObject(), 673
SetOptimizer(), 673
SetTransform(), 673
Update(), 673, 674
itk::ImageFileRead
Complex images, 32
Vector images, 26, 34
itk::ImageFileReader, 3
header, 3, 15, 18, 38
Instantiation, 4, 15, 19
New(), 4, 16, 19, 22, 24, 29, 31, 35
RGB Image, 17
SetFileName(), 4, 16, 20, 22, 24, 29, 31, 35
SmartPointer, 4, 16, 19, 22, 24, 29, 31, 35
itk::ImageFileWrite
Complex images, 32
Vector images, 26
itk::ImageFileWriter, 3
header, 3, 15, 18, 48
Instantiation, 4, 15, 19, 37
New(), 4, 16, 19, 22, 24, 29, 31, 35
RGB Image, 17, 41
SetFileName(), 4, 16, 20, 22, 24, 29, 31, 35
SetImageIO(), 16
SmartPointer, 4, 16, 19, 22, 24, 29, 31, 35
UseInputMetaDataDictionaryOff(), 47
itk::ImageMaskSpatialObject
header, 594
Instantiation, 594
New, 594
Pointer, 594
SetImage(), 595
itk::ImageMomentsCalculator, 398
itk::ImageRegistrationMethod
DataObjectDecorator, 333
GetOutput(), 333
Monitoring, 349
Pipeline, 333
Resampling image, 333
itk::ImageRegistrationMethodv4
AffineTransform, 472
GetTransform(), 328
InPlaceOn(), 618
Multi-Modality, 357, 457, 472, 592
Multi-Resolution, 457, 472
Multi-Stage, 472, 487
Scaling parameter space, 472
SetInitialTransform(), 618
itk::ImageSeriesReader
GetMetaDataDictionaryArray(), 55
header, 36, 48
Instantiation, 37
RGB Image, 41
SetFileNames(), 50
itk::ImageSeriesWriter
header, 38
SetMetaDataDictionaryArray(), 55
itk::ImageToImageMetricv4
SetFixedImageMask(), 595
itk::InterpolateImageFunction, 561
Evaluate(), 561
EvaluateAtContinuousIndex(), 561
IsInsideBuffer(), 561
SetInputImage(), 561
itk::IsolatedConnectedImageFilter
AddSeed1(), 724
AddSeed2(), 724
GetIsolatedValue(), 724
header, 723
SetLower(), 724
SetReplaceValue(), 724
itk::KernelTransforms, 555
itk::LaplacianSegmentationLevelSetImageFilter, 828
SetPropagationScaling(), 832
itk::LaplacianRecursiveGaussianImageFilter, 122
header, 122
New(), 122
Pointer, 122
SetSigma(), 123
Update(), 123
itk::LBFGS2Optimizer
header, 615
itk::LBFGS2Optimizerv4, 615
itk::LBFGSOptimizerv4, 590
itk::LBFGSBOptimizerv4, 590
itk::LBFGSBOptimizerv4, 617
header, 617
itk::LBFGSOptimizerv4, 606
header, 606
itk::LevelSetMotionRegistrationFilter, 610
SetFixedImage(), 610
SetMovingImage(), 610
SetNumberOfIterations(), 610
SetStandardDeviations(), 610
itk::LinearInterpolateImageFunction, 561
header, 666
itk::MaskImageFilter, 311
itk::MattesMutualInformationImageToImageMetricv4, 583
SetNumberOfHistogramBins(), 357, 583
itk::MeanSquaresImageToImageMetricv4, 573
itk::MeanImageFilter, 124
GetOutput(), 125
header, 124
instantiation, 125
Neighborhood, 125
New(), 125
Pointer, 125
Radius, 125
SetInput(), 125
itk::MeanSquaresImageToImageMetricv4
SetFixedInterpolator(), 325
SetMovingInterpolator(), 325
itk::MedianImageFilter, 128
GetOutput(), 129
header, 128
instantiation, 129
Neighborhood, 129
New(), 129
Pointer, 129
Radius, 129
SetInput(), 129
itk::MinMaxCurvatureFlowImageFilter, 196
header, 196
instantiation, 196
New(), 196
Pointer, 196
SetNumberOfIterations(), 197
SetTimeStep(), 197
Update(), 197
itk::MultiGradientOptimizerv4, 590
itk::MultiResolutionPyramidImageFilter, 454
GetSchedule(), 456
SetNumberOfLevels(), 455
SetSchedule(), 456
SetStartingShrinkFactors(), 456
itk::MutualInformationImageToImageMetricv4
Trade-offs, 360
itk::NearestNeighborInterpolateImageFunction, 561
header, 241
instantiation, 242
itk::NeighborhoodConnectedImageFilter
SetLower(), 706
SetReplaceValue(), 706
SetSeed(), 706
SetUppder(), 706
itk::NormalizeImageFilter, 90
header, 90
New(), 91
Pointer, 91
SetInput(), 91
Update(), 91
itk::NormalVariateGenerator
Initialize(), 593, 672
New(), 593, 672
Pointer, 593, 672
itk::NumericSeriesFileNames
header, 36
itk::ObjectToObjectOptimizer, 585
GetCurrentPosition(), 590
SetMetric(), 590
SetScales(), 590
SetScalesEstimator(), 590
StartOptimization(), 590
itk::OnePlusOneEvolutionaryOptimizer
Instantiation, 671
itk::OnePlusOneEvolutionaryOptimizerv4, 590
itk::OnePlusOneEvolutionaryOptimizer
Initialize(), 845
SetEpsilon(), 845
SetMaximumIteration(), 845
SetNormalVariateGenerator(), 845
SetScales(), 845
itk::OnePlusOneEvolutionaryOptimizerv4
Multi-Modality, 592
itk::Optimizer
MaximizeOff(), 673
MaximizeOn(), 673
itk::OtsuThresholdImageFilter
SetInput(), 698
SetInsideValue(), 698
SetOutsideValue(), 698
itk::OtsuMultipleThresholdsCalculator
GetOutput(), 703
itk::PCAShapeSignedDistanceFunction
New(), 843
SetPrincipalComponentStandardDeviations(), 843
SetMeanImage(), 843
SetNumberOfPrincipalComponents(), 843
SetPrincipalComponentsImages(), 843
SetTransform(), 843
itk::Point
Concept, 498
itk::PowellOptimizerv4, 590
itk::QuasiNewtonOptimizerv4, 590
itk::QuaternionRigidTransform, 530
itk::RecursiveGaussianImageFilter, 116, 168
header, 116, 168
Instantiation, 116, 122, 169
New(), 116, 169
Pointer, 116, 169
SetSigma(), 119, 171
Update(), 171
itk::RegionOfInterestImageFilter
header, 20
SetRegionOfInterest(), 22
itk::RegistrationMethod
SetTransform(), 616
itk::RegistrationMethodv4
GetCurrentIteration(), 443
GetValue(), 443
SetFixedImage(), 325
SetMetric(), 325
SetMovingImage(), 325
SetMovingInitialTransform(), 326
SetOptimizer(), 325
SetTransform(), 442
itk::RegularStepGradientDescentOptimizer
SetRelaxationFactor(), 359
itk::RegularStepGradientDescentOptimizerv4, 590
itk::ResampleImageFilter, 241, 627
GetOutput(), 243
header, 241
Image internal transform, 258
instantiation, 242
New(), 242
Pointer, 242
SetDefaultPixelValue(), 243, 255, 259, 286
SetInput(), 243, 627
SetInterpolator(), 242, 627
SetOutputOrigin(), 243, 259, 262, 268, 277, 286, 627
SetOutputSpacing(), 243, 259, 268, 277, 286, 627
SetSize(), 243, 262, 268, 277, 286
SetTransform(), 242, 259
itk::RescaleIntensityImageFilter, 90
header, 18, 90
New(), 91
Pointer, 91
SetInput(), 91
SetOutputMaximum(), 19, 91
SetOutputMinimum(), 19, 91
Update(), 91
itk::RGBPixel
header, 916
Image, 17, 41
Instantiation, 17, 41
Statistics, 916
itk::Rigid3DPerspectiveTransform, 545
itk::Sample
Histogram, 873
Interfaces, 866
PointSetToListSampleAdaptor, 872
itk::ScaleLogarithmicTransform, 515
itk::ScaleTransform, 511
itk::SegmentationLevelSetImageFilter
SetAdvectionScaling(), 797
SetCurvatureScaling(), 783, 797, 812
SetMaximumRMSError(), 783
SetNumberOfIterations(), 783
SetPropagationScaling(), 783, 797, 812, 832
itk::SegmentationLevelSetImageFilter
GenerateSpeedImage(), 828
GetSpeedImage(), 828
SetAdvectionScaling(), 823
itk::ShapeDetectionLevelSetImageFilter
SetCurvatureScaling(), 783
SetMaximumRMSError(), 783
SetNumberOfIterations(), 783
itk::ShapeDetectionLevelSetImageFilter
SetPropagationScaling(), 783
itk::ShapePriorSegmentationLevelSetImageFilter
Monitoring, 840
SetAdvectionScaling(), 842
SetCurvatureScaling(), 842
SetPropagationScaling(), 842
itk::ShapePriorMAPCostFunction
SetShapeParameterMeans(), 845
SetShapeParameterStandardDeviations(), 845
SetWeights(), 844
itk::ShapeSignedDistanceFunction
SetTransform(), 843
itk::ShiftScaleImageFilter, 90
header, 90
New(), 91
Pointer, 91
SetInput(), 91
SetScale(), 91
SetShift(), 91
Update(), 91
itk::SigmoidImageFilter
GetOutput(), 96
header, 95
instantiation, 95
New(), 95
Pointer, 95
SetAlpha(), 95
SetBeta(), 95
SetInput(), 96
SetOutputMaximum(), 95
SetOutputMinimum(), 95
itk::SigmoidImageFilter , 95
itk::SignedDanielssonDistanceMapImageFilter
Header, 233
Instantiation, 233
itk::Similarity2DTransform, 526
header, 292
instantiation, 293
New(), 293
Pointer, 293
SetAngle(), 293
SetRotationCenter(), 293
SetScale(), 293, 294
itk::Similarity3DTransform, 542
itk::Simularity2DTransform, 415
header, 415
Instantiation, 415
Pointer, 416
SetAngle(), 416
SetScale(), 416
itk::SingleValuedNonLinearVnlOptimizerv4, 585
itk::SpatialObjectToImageFilter
header, 665
Instantiation, 669
itk::SpatialObjectToImageFilter
New(), 669
Pointer, 669
SetInput(), 670
SetSize(), 670
Update(), 670
itk::Statistics
Color Images, 912
itk::Statistics::CovarianceSampleFilter, 890
itk::Statistics::EuclideanDistanceMetric, 901
itk::Statistics::ExpectationMaximizationMixtureModelEstimator, 952
itk::Statistics::GaussianMixtureModelComponent, 952
itk::Statistics::GaussianMembershipFunction, 900, 946
itk::Statistics::HeapSort, 897
itk::Statistics::Histogram
GetFrequency(), 914
Iterators, 911
Size(), 914
itk::Statistics::ImageToListAdaptor, 868
itk::Statistics::ImageToHistogramFilter
header, 912, 916
Update(), 913
itk::Statistics::ImageTohistogramFilter
GetOutput(), 914
itk::Statistics::InsertSort, 897
itk::Statistics::IntrospectiveSort, 897
itk::Statistics::JointDomainImageToListAdaptor, 868
itk::Statistics::KdTree, 886
itk::Statistics::KdTreeBasedKmeansEstimator, 934
itk::Statistics::KdTreeGenerator, 886
itk::Statistics::ListSampleToHistogramFilter, 884, 894
itk::Statistics::ListSampleToHistogramGenerator, 884
header, 908
itk::Statistics::ListSample, 866
itk::Statistics::MaximumDecisionRule, 903
itk::Statistics::MaximumRatioDecisionRule, 905
itk::Statistics::MeanCalculator, 890
itk::Statistics::MembershipSampleGenerator, 884
itk::Statistics::MembershipSample, 882
itk::Statistics::MinimumDecisionRule, 904
itk::Statistics::NeighborhoodSampler, 884
itk::Statistics::NeighborhoodSampler, 895
itk::Statistics::NormalVariateGenerator, 907, 946
Initialize(), 845
itk::Statistics::PointSetToListSampleAdaptor, 870
itk::Statistics::QuickSelect, 897
itk::Statistics::SampleToHistogramFilter
instantiation, 909
itk::Statistics::SampleToHistogramProjectionFilter, 884
itk::Statistics::SampleClassifier, 946
itk::Statistics::ScalarImageToHistogramGenerator
Compute(), 911
header, 910, 911
itk::Statistics::ScalarImageToListAdaptor, 868
header, 908
instantiation, 909
itk::Statistics::SelectiveSubsampleGenerator, 884
itk::Statistics::Subsample, 879, 897
itk::Statistics::WeightedCentroidKdTreeGenerator, 886
itk::Statistics::WeightedCovarianceCalculator, 892
itk::Statistics::WeightedMeanCalculator, 892
itk::SymmetricForcesDemonsRegistrationFilter, 633
SetFixedImage(), 633
SetMovingImage(), 633
SetNumberOfIterations(), 634
SetStandardDeviations(), 634
itk::ThinPlateR2LogRSplineKernelTransform, 555
itk::ThinPlateSplineKernelTransform, 555
itk::ThresholdSegmentationLevelSetImageFilter, 806
SetCurvatureScaling(), 812
SetPropagationScaling(), 812
itk::ThresholdImageFilter
Header, 84
Instantiation, 84
SetInput(), 85
SetOutsideValue(), 86
ThresholdAbove(), 84
ThresholdBelow(), 84, 86
ThresholdOutside(), 84
itk::Transform, 495
GetJacobian(), 504
SetParameters(), 503
TransformCovariantVector(), 501
TransformPoint(), 501
TransformVector(), 501
itk::TranslationTransform, 508
GetNumberOfParameters(), 326
Instantiation, 472
New(), 473
Pointer, 473
itk::Vector
Concept, 498
itk::VectorConfidenceConnectedImageFilter
SetInitialNeighborhoodRadius(), 732
SetMultiplier(), 732
SetNumberOfIterations(), 732
SetReplaceValue(), 732
SetSeed(), 732
itk::VectorCurvatureAnisotropicDiffusionImageFilter, 211
header, 211, 220
instantiation, 211, 221
New(), 211, 221
Pointer, 211, 221
RGB Images, 220
SetNumberOfIterations(), 212, 221
SetTimeStep(), 212, 221
Update(), 212, 221
itk::VectorGradientAnisotropicDiffusionImageFilter, 206
header, 206, 215
instantiation, 207, 216
New(), 207, 216
Pointer, 207, 216
RGB Images, 215
SetNumberOfIterations(), 207, 216
SetTimeStep(), 207, 216
Update(), 207, 216
itk::VectorIndexSelectionCastImageFilter
header, 34
Instantiation, 34
New(), 34
Pointer, 34
SetIndex(), 34
itk::Versor
Definition, 533
itk::VersorRigid3DTransform, 427
header, 427
Instantiation, 428
Pointer, 428
itk::VersorRigid3DTransform, 536
itk::VersorTransform, 533
itk::VersorTransformOptimizer, 533
itk::VnlForwardFFTImageFilter, 308, 311
itk::VolumeSplineKernelTransform, 555
itk::VotingBinaryHoleFillingImageFilter, 149
GetOutput(), 150
header, 149
instantiation, 149
Neighborhood, 149
New(), 149
Pointer, 149
Radius, 149
SetBackgroundValue(), 150
SetForegroundValue(), 150
SetInput(), 150
SetMajorityThreshold(), 150
itk::VotingBinaryIterativeHoleFillingImageFilter, 153
GetOutput(), 154
header, 153
instantiation, 153
Neighborhood, 154
New(), 153
Pointer, 153
Radius, 154
SetBackgroundValue(), 154
SetForegroundValue(), 154
SetInput(), 154
SetMajorityThreshold(), 154
SetMaximumNumberOfIterations(), 154
itk::VTKImageIO
header, 15
Instantiation, 15
New(), 16
SetFileTypeToASCII(), 16
SmartPointer, 16
itk::WarpImageFilter
SetInterpolator(), 298
itk::WarpImageFilter, 297, 611, 634
SetDisplacementField(), 611, 634
SetInput(), 611, 634
SetInterpolator(), 611, 634
SetOutputOrigin(), 611, 634
SetOutputSpacing(), 611, 634
itk::WindowedSincInterpolateImageFunction, 564
itksys
MakeDirectory, 54
SystemTools, 54
Joint Entropy
Statistics, 924
Joint Histogram
Statistics, 924
LandmarkDisplacementFieldSource, 619
LaplacianRecursiveGaussianImageFilter
SetNormalizeAcrossScale(), 123
LinearInterpolateImageFunction, 560
MakeDirectory
itksys, 54
SystemTools, 54
Marching Cubes, 314
Medical Errors, 52
Mesh
Isosurface extraction, 314
MetaDataDictionary, 56, 61
Begin(), 61
ConstIterator, 61
End(), 61
header, 55
Iterator, 61
MetaDataObject, 61
String entries, 61
MetaDataObject
GetMetaDataObjectValue(), 57
header, 55
Strings, 61
Model to Image Registration
Observer, 666
Mutual Information
Statistics, 924
NearestNeighborInterpolateImageFunction, 560
Open Science, 373
RecursiveGaussianImageFilter
SetDirection(), 117, 169
SetNormalizeAcrossScale(), 118, 170
SetOrder(), 117, 169
Registration
Finite Element-Based, 604
RegularStepGradientDescentOptimizer
SetLearningRate(), 377
SetMinimumStepLength(), 377
SetNumberOfIterations(), 377
SetRelaxationFactor(), 377
Resampling, 303
RescaleIntensityImageFilter
Instantiation, 31, 35
New(), 31, 35
Pointer, 31, 35
SetOutputMaximum(), 31, 35
SetOutputMinimum(), 31, 35
RGB
reading Image, 17, 41
writing Image, 17, 41
Series
Reading, 36
Writing, 36
SetConductanceParameter()
itk::CurvatureAnisotropicDiffusionImageFilter, 184
SetDilateValue()
itk::BinaryDilateImageFilter, 134
SetDomainSigma()
itk::BilateralImageFilter, 203
SetErodeValue()
itk::BinaryErodeImageFilter, 134
SetFileName()
itk::ImageFileReader, 4, 20, 22, 24, 29, 31, 35
itk::ImageFileWriter, 4, 20, 22, 24, 29, 31, 35
SetInsideValue()
itk::BinaryThresholdImageFilter, 71
itk::OtsuThresholdImageFilter, 698
SetKernel()
itk::BinaryDilateImageFilter, 133
itk::BinaryErodeImageFilter, 133
itk::GrayscaleDilateImageFilter, 138
itk::GrayscaleErodeImageFilter, 138
SetNumberOfIterations()
itk::CurvatureAnisotropicDiffusionImageFilter, 184
itk::CurvatureFlowImageFilter, 189
itk::GradientAnisotropicDiffusionImageFilter, 179
itk::MinMaxCurvatureFlowImageFilter, 197
itk::VectorCurvatureAnisotropicDiffusionImageFilter, 212, 221
itk::VectorGradientAnisotropicDiffusionImageFilter, 207, 216
SetOutputMaximum()
itk::RescaleIntensityImageFilter, 91
SetOutputMinimum()
itk::RescaleIntensityImageFilter, 91
SetOutsideValue()
itk::BinaryThresholdImageFilter, 71
itk::OtsuThresholdImageFilter, 698
itk::ThresholdImageFilter, 86
SetRadius()
itk::BinaryBallStructuringElement, 133, 138
SetRangeSigma()
itk::BilateralImageFilter, 203
SetScale()
itk::ShiftScaleImageFilter, 91
SetShift()
itk::ShiftScaleImageFilter, 91
SetSigma()
itk::GradientMagnitudeRecursiveGaussianImageFilter, 105
itk::LaplacianRecursiveGaussianImageFilter, 123
itk::RecursiveGaussianImageFilter, 119, 171
SetTimeStep()
itk::CurvatureAnisotropicDiffusionImageFilter, 184
itk::CurvatureFlowImageFilter, 189
itk::GradientAnisotropicDiffusionImageFilter, 179
itk::MinMaxCurvatureFlowImageFilter, 197
itk::VectorCurvatureAnisotropicDiffusionImageFilter, 212, 221
itk::VectorGradientAnisotropicDiffusionImageFilter, 207, 216
Statistics
Bayesian plugin classifier, 946
Covariance, 890
Expectation maximization, 952
Gaussian (normal) probability density function, 900
Heap sort, 897
Images, 908
Importing ListSample to Histogram, 894
Insert sort, 897
Introspective sort, 897
Joint Entropy, 924
Joint Histogram, 924
k-means clustering (using k-d tree), 934
Mean, 890
Mixture model estimation, 952
Mutual Information, 924
Order statistics, 897
Quick select, 897
Random number generation
Normal (Gaussian) distribution, 907
Sampling measurement vectors using radius, 895
Sorting, 897
Weighted covariance, 892
Weighted mean, 892
Subsampling, 303
Supersampling, 303
Surface Extraction, 313
SystemTools, 54
MakeDirectory, 54
Vector
Geometrical Concept, 495
Vector images
Reading, 26
Writing, 26
VectorMagnitudeImageFilter
header, 30
Instantiation, 31
New(), 31
Pointer, 31
Voronoi partitions, 232
itk::DanielssonDistanceMapImageFilter, 232
WarpImageFilter, 619
Watersheds, 736
ImageFilter, 746
Overview, 736
WindowedSincInterpolateImageFunction, 560