[Insight-users] Can't read Philips dicom data

Sun Oct 12 12:38:35 EDT 2008

I am newly using ITK to do image processing.

I have met the same problem as Cois posted...but I am still not clear about
how to solve it by using just a GDCMImageIO and an ImageFileReader ...

I just implement the examples in ITK-DicomSeriesReadImageWrite2.cxx, but
could not combine my dicom series into a volume.

Could anyone help me ...

Sara

C. A. Cois wrote:
> 
> I've been working with some Philips dicom data, and having
> some difficulties.  I had been corresponding with the list a few years
> back
> about similar problems, and thought you guys may be able to help.  The
> basic situation is this:
> 
> I have a data disc with a dicom directory containing IM_###, PS_###,
> and XX_### files, where ### are integers. The pack-in philips reader
> can read and display the series, but ITK readers are unable to.  Below
> is the output from DicomSeriesReadImageWrite2.  In essence, it can
> read the series headers, but associates only one file with each
> series, and therefore fails.  I have verified this situation by
> removing files from the directory while using the pack-in philips
> reader to read all available series.  I can read a given 3D data set
> with only two files, one IM_### file and one PS_### file. However, ITK
> readers can not work with just these two files. I've heard rumblings
> about a new philips one file dicom format..could this be it?  Anyone
> have any ideas?
> 
> 
> OUTPUT
> -------------
> 
> The directory:
> 
> C:\Consulting
> 
> Contains the following DICOM Series:
> 
> 
> 
> Now reading series:
> 
> Data
> 
> 
> 
> itk::ExceptionObject (00F7FC1C)
> Location: "void __thiscall itk::ImageSeriesReader<class
> itk::Image<short,3> >::GenerateOutputInformation(void)"
> File: c:\source\insighttoolkit-3.2.0\code\io\itkImageSeriesReader.txx
> Line: 196
> Description: itk::ERROR: ImageSeriesReader(01411930): At least two
> filenames are required.
> 
> 
> 
> The directory:
> 
> C:\Consulting Projects\Dicom Data 8_19_08\Full Disc
> Sheep_747_565_732\DICOM
> 
> Contains the following DICOM Series:
> 
> 1.3.46.670589.11.20071.5.0.4884.200804261029241460310125625620080426
> 1.3.46.670589.11.20071.5.0.4884.200804261036501870130112812820080426
> 1.3.46.670589.11.20071.5.0.4884.200804261046477571140125625620080426
> 1.3.46.670589.11.20071.5.0.4884.200804261054322032050132032020080426
> 1.3.46.670589.11.20071.5.0.4884.200804261056536035960125625620080426
> 1.3.46.670589.11.20071.5.0.4884.200804261058566242870125625620080426
> 1.3.46.670589.11.20071.5.0.4884.200804261059510149780112812820080426
> 1.3.46.670589.11.20071.5.0.4884.200804261101109650690125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042611022343575100132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042611031910614110132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042611085634745120125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042611093939785130125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042611105676883140112812820080426
> 1.3.46.670589.11.20071.5.0.4884.2008042611135920892150125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042611222251961160125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042611225887022170125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042611332196106180138438420080426
> 1.3.46.670589.11.20071.5.0.4884.2008042612345217277190125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042612405740357200138438420080426
> 1.3.46.670589.11.20071.5.0.4884.2008042612423667526210138438420080426
> 1.3.46.670589.11.20071.5.0.4884.2008042612442684695220138438420080426
> 1.3.46.670589.11.20071.5.0.4884.2008042612451848864230138438420080426
> 1.3.46.670589.11.20071.5.0.4884.2008042612480289053240138438420080426
> 1.3.46.670589.11.20071.5.0.4884.2008042612513628222250138438420080426
> 1.3.46.670589.11.20071.5.0.4884.200804261358146439110125625620080426
> 1.3.46.670589.11.20071.5.0.4884.200804261401569548130112812820080426
> 1.3.46.670589.11.20071.5.0.4884.200804261421272349040125625620080426
> 1.3.46.670589.11.20071.5.0.4884.200804261422157553350125625620080426
> 1.3.46.670589.11.20071.5.0.4884.200804261423497862860132032020080426
> 1.3.46.670589.11.20071.5.0.4884.200804261424427066770132032020080426
> 1.3.46.670589.11.20071.5.0.4884.200804261429121776680132032020080426
> 1.3.46.670589.11.20071.5.0.4884.200804261431596895690132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614370304385100112812820080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614425203394110132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614440656433120125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614471210482130125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614480125551140125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614484275620150132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614514951049160132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614530915089170125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614534915138180132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614543931177190125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614570642199200125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614585270288210125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042614593742306220125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615002606426230132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615033739855240125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615040885889250132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615053854943260125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615093315992270125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615102643081280132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615132342502290125625620080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615141101550300132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615255910610320138438420080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615275979779330138438420080426
> 1.3.46.670589.11.20071.5.0.4884.2008042615312190948340138438420080426
> 1.3.46.670589.11.20071.5.0.4884.200804261723411211710125625620080426
> 1.3.46.670589.11.20071.5.0.4884.200804261731278920830138438420080426
> 1.3.46.670589.11.20071.5.0.4884.200804261754099837940138438420080426
> 1.3.46.670589.11.20071.5.0.4884.200804261817189254950125625620080426
> 1.3.46.670589.11.20071.5.0.4884.200804261820324363970125625620080426
> 1.3.46.670589.11.20071.5.0.4884.200804261823272688880138438420080426
> 1.3.46.670589.11.20071.5.0.4884.200804261836442388990112812820080426
> 1.3.46.670589.11.20071.5.0.4884.2008042618443378066100132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042618453975105110132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042618483385235120132032020080426
> 1.3.46.670589.11.20071.5.0.4884.2008042618505970345140132032020080426
> 
> 
> Now reading series:
> 
> 1.3.46.670589.11.20071.5.0.4884.200804261029241460310125625620080426
> 
> 
> 
> itk::ExceptionObject (00F7FC1C)
> Location: "void __thiscall itk::ImageSeriesReader<class
> itk::Image<short,3> >::GenerateOutputInformation(void)"
> File: c:\source\insighttoolkit-3.2.0\code\io\itkImageSeriesReader.txx
> Line: 196
> Description: itk::ERROR: ImageSeriesReader(01411928): At least two
> filenames are required.
> 
> -- 
> Constantine Aaron Cois, Ph.D.
> 
> Senior Software Engineer | UPMC ISD Commercial Product Development
> 
> øffice α 412.915.0077 | çell α 412.915.0077
> _______________________________________________
> Insight-users mailing list
> Insight-users at itk.org
> http://www.itk.org/mailman/listinfo/insight-users
> 
> 

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