itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage > Class Template Reference

#include <itkMutualInformationImageToImageMetric.h>

Detailed Description

template<typename TFixedImage, typename TMovingImage>
class itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >

Computes the mutual information between two images to be registered.

MutualInformationImageToImageMetric computes the mutual information between a fixed and moving image to be registered.

This class is templated over the FixedImage type and the MovingImage type.

The fixed and moving images are set via methods SetFixedImage() and SetMovingImage(). This metric makes use of user specified Transform and Interpolator. The Transform is used to map points from the fixed image to the moving image domain. The Interpolator is used to evaluate the image intensity at user specified geometric points in the moving image. The Transform and Interpolator are set via methods SetTransform() and SetInterpolator().

Warning

This metric assumes that the moving image has already been connected to the interpolator outside of this class.

The method GetValue() computes of the mutual information while method GetValueAndDerivative() computes both the mutual information and its derivatives with respect to the transform parameters.

The calculations are based on the method of Viola and Wells where the probability density distributions are estimated using Parzen windows.

By default a Gaussian kernel is used in the density estimation. Other option include Cauchy and spline-based. A user can specify the kernel passing in a pointer a KernelFunctionBase using the SetKernelFunction() method.

Mutual information is estimated using two sample sets: one to calculate the singular and joint pdf's and one to calculate the entropy integral. By default 50 samples points are used in each set. Other values can be set via the SetNumberOfSpatialSamples() method.

Quality of the density estimate depends on the choice of the kernel's standard deviation. Optimal choice will depend on the images. It is can be shown that around the optimal variance, the mutual information estimate is relatively insensitive to small changes of the standard deviation. In our experiments, we have found that a standard deviation of 0.4 works well for images normalized to have a mean of zero and standard deviation of 1.0. The variance can be set via methods SetFixedImageStandardDeviation() and SetMovingImageStandardDeviation().

Implementation of this class is based on: Viola, P. and Wells III, W. (1997). "Alignment by Maximization of Mutual Information" International Journal of Computer Vision, 24(2):137-154

See also

KernelFunctionBase

GaussianKernelFunction

ITK Sphinx Examples:

• All ITK Sphinx Examples

• Mutual Information

• Mutual Information Affine

Examples

Examples/RegistrationITKv4/ImageRegistration2.cxx, SphinxExamples/src/Core/Transform/MutualInformationAffine/Code.cxx, SphinxExamples/src/Registration/Common/MutualInformation/Code.cxx, and SphinxExamples/src/Registration/Common/PerformMultiModalityRegistrationWithMutualInformation/Code.cxx.

Definition at line 94 of file itkMutualInformationImageToImageMetric.h.

Inheritance diagram for itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >:

Collaboration diagram for itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >:

Classes
class	SpatialSample

Public Types
using	ConstPointer = SmartPointer< const Self >
using	FixedImageIndexType = typename FixedImageType::IndexType
using	FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType
using	FixedImagePointType = typename TransformType::InputPointType
using	KernelFunctionType = KernelFunctionBase< double >
using	MovingImageCosntPointer = typename Superclass::MovingImageConstPointer
using	MovingImageIndexType = typename MovingImageType::IndexType
using	MovingImagePointType = typename TransformType::OutputPointType
using	Pointer = SmartPointer< Self >
using	Self = MutualInformationImageToImageMetric
using	Superclass = ImageToImageMetric< TFixedImage, TMovingImage >
Public Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
using	ConstPointer = SmartPointer< const Self >
using	CoordinateRepresentationType = typename Superclass::ParametersValueType
using	FixedImageConstPointer = typename FixedImageType::ConstPointer
using	FixedImageIndexContainer = std::vector< FixedImageIndexType >
using	FixedImageIndexType = typename FixedImageType::IndexType
using	FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType
using	FixedImageMaskConstPointer = typename FixedImageMaskType::ConstPointer
using	FixedImageMaskPointer = typename FixedImageMaskType::Pointer
using	FixedImageMaskType = SpatialObject< Self::FixedImageDimension >
using	FixedImagePixelType = typename TFixedImage::PixelType
using	FixedImagePointType = typename TransformType::InputPointType
using	FixedImageRegionType = typename FixedImageType::RegionType
using	FixedImageType = TFixedImage
using	GradientImageFilterPointer = typename GradientImageFilterType::Pointer
using	GradientImageFilterType = GradientRecursiveGaussianImageFilter< MovingImageType, GradientImageType >
using	GradientImagePointer = SmartPointer< GradientImageType >
using	GradientImageType = Image< GradientPixelType, Self::MovingImageDimension >
using	GradientPixelType = CovariantVector< RealType, Self::MovingImageDimension >
using	InputPointType = typename TransformType::InputPointType
using	InterpolatorPointer = typename InterpolatorType::Pointer
using	InterpolatorType = InterpolateImageFunction< MovingImageType, CoordinateRepresentationType >
using	MovingImageConstPointer = typename MovingImageType::ConstPointer
using	MovingImageIndexType = typename MovingImageType::IndexType
using	MovingImageMaskConstPointer = typename MovingImageMaskType::ConstPointer
using	MovingImageMaskPointer = typename MovingImageMaskType::Pointer
using	MovingImageMaskType = SpatialObject< Self::MovingImageDimension >
using	MovingImagePixelType = typename TMovingImage::PixelType
using	MovingImagePointType = typename TransformType::OutputPointType
using	MovingImageType = TMovingImage
using	MultiThreaderType = MultiThreaderBase
using	OutputPointType = typename TransformType::OutputPointType
using	Pointer = SmartPointer< Self >
using	RealType = typename NumericTraits< MovingImagePixelType >::RealType
using	Self = ImageToImageMetric
using	Superclass = SingleValuedCostFunction
using	TransformJacobianType = typename TransformType::JacobianType
using	TransformParametersType = typename TransformType::ParametersType
using	TransformPointer = typename TransformType::Pointer
using	TransformType = Transform< CoordinateRepresentationType, Self::MovingImageDimension, Self::FixedImageDimension >
Public Types inherited from itk::SingleValuedCostFunction
using	ConstPointer = SmartPointer< const Self >
using	DerivativeType = Array< ParametersValueType >
using	MeasureType = double
using	ParametersType = Superclass::ParametersType
using	ParametersValueType = Superclass::ParametersValueType
using	Pointer = SmartPointer< Self >
using	Self = SingleValuedCostFunction
using	Superclass = CostFunction
Public Types inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
using	ConstPointer = SmartPointer< const Self >
using	ParametersType = OptimizerParameters< TInternalComputationValueType >
using	ParametersValueType = TInternalComputationValueType
using	Pointer = SmartPointer< Self >
using	Self = CostFunctionTemplate
using	Superclass = Object
Public Types inherited from itk::Object
using	ConstPointer = SmartPointer< const Self >
using	Pointer = SmartPointer< Self >
using	Self = Object
using	Superclass = LightObject
Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >
using	Pointer = SmartPointer< Self >
using	Self = LightObject

Public Member Functions
void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const override
const char *	GetNameOfClass () const override
virtual const unsigned int &	GetNumberOfSpatialSamples () const
MeasureType	GetValue (const ParametersType &parameters) const override
void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override
void	SetNumberOfSpatialSamples (unsigned int num)
virtual void	SetMovingImageStandardDeviation (double _arg)
virtual const double &	GetMovingImageStandardDeviation () const
virtual void	SetFixedImageStandardDeviation (double _arg)
virtual double	GetFixedImageStandardDeviation () const
virtual void	SetKernelFunction (KernelFunctionType *_arg)
virtual KernelFunctionType *	GetModifiableKernelFunction ()
Public Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	ComputeGradient ()
virtual const FixedImageRegionType &	GetFixedImageRegion () const
virtual const FixedImagePixelType &	GetFixedImageSamplesIntensityThreshold () const
virtual GradientImageType *	GetModifiableGradientImage ()
virtual InterpolatorType *	GetModifiableInterpolator ()
virtual TransformType *	GetModifiableTransform ()
SizeValueType	GetNumberOfMovingImageSamples ()
unsigned int	GetNumberOfParameters () const override
virtual const SizeValueType &	GetNumberOfPixelsCounted () const
SizeValueType	GetNumberOfSpatialSamples ()
virtual const bool &	GetUseAllPixels () const
virtual const bool &	GetUseFixedImageIndexes () const
virtual const bool &	GetUseFixedImageSamplesIntensityThreshold () const
virtual const bool &	GetUseSequentialSampling () const
virtual void	Initialize ()
virtual void	MultiThreadingInitialize ()
void	SetFixedImageIndexes (const FixedImageIndexContainer &indexes)
virtual void	SetFixedImageRegion (const FixedImageRegionType reg)
void	SetFixedImageSamplesIntensityThreshold (const FixedImagePixelType &thresh)
virtual void	SetInterpolator (InterpolatorType *_arg)
void	SetNumberOfSpatialSamples (SizeValueType num)
virtual void	SetTransform (TransformType *_arg)
void	SetTransformParameters (const ParametersType &parameters) const
void	SetUseAllPixels (bool useAllPixels)
void	SetUseFixedImageIndexes (bool useIndexes)
void	SetUseFixedImageSamplesIntensityThreshold (bool useThresh)
void	SetUseSequentialSampling (bool useSequential)
void	UseAllPixelsOff ()
void	UseAllPixelsOn ()
virtual void	SetFixedImage (const FixedImageType *_arg)
virtual const FixedImageType *	GetFixedImage () const
virtual void	SetMovingImage (const MovingImageType *_arg)
virtual const MovingImageType *	GetMovingImage () const
virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)
virtual const MovingImageMaskType *	GetMovingImageMask () const
virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)
virtual const FixedImageMaskType *	GetFixedImageMask () const
void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)
virtual const ThreadIdType &	GetNumberOfWorkUnits () const
virtual void	SetComputeGradient (bool _arg)
virtual const bool &	GetComputeGradient () const
virtual void	ComputeGradientOn ()
virtual void	SetNumberOfFixedImageSamples (SizeValueType numSamples)
virtual const SizeValueType &	GetNumberOfFixedImageSamples () const
void	ReinitializeSeed ()
void	ReinitializeSeed (int seed)
virtual void	SetUseCachingOfBSplineWeights (bool _arg)
virtual const bool &	GetUseCachingOfBSplineWeights () const
virtual void	UseCachingOfBSplineWeightsOn ()
virtual MultiThreaderType *	GetModifiableThreader ()
const TransformPointer *	GetThreaderTransform ()
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *cmd) const
unsigned long	AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const
LightObject::Pointer	CreateAnother () const override
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag) const
void	SetDebug (bool debugFlag) const
void	SetReferenceCount (int) override
void	UnRegister () const noexcept override
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
Pointer	Clone () const
virtual void	Delete ()
virtual int	GetReferenceCount () const
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool val)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()

Static Public Attributes
static constexpr unsigned int	MovingImageDimension = MovingImageType::ImageDimension
Static Public Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static constexpr unsigned int	FixedImageDimension = TFixedImage::ImageDimension
static constexpr unsigned int	MovingImageDimension = TMovingImage::ImageDimension

Protected Member Functions
	MutualInformationImageToImageMetric ()
void	PrintSelf (std::ostream &os, Indent indent) const override
	~MutualInformationImageToImageMetric () override=default
Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	ComputeImageDerivatives (const MovingImagePointType &mappedPoint, ImageDerivativesType &gradient, ThreadIdType threadId) const
void	GetValueAndDerivativeMultiThreadedInitiate () const
void	GetValueAndDerivativeMultiThreadedPostProcessInitiate () const
virtual void	GetValueAndDerivativeThread (ThreadIdType threadId) const
virtual void	GetValueAndDerivativeThreadPostProcess (ThreadIdType, bool) const
virtual void	GetValueAndDerivativeThreadPreProcess (ThreadIdType, bool) const
virtual bool	GetValueAndDerivativeThreadProcessSample (ThreadIdType, SizeValueType, const MovingImagePointType &, double, const ImageDerivativesType &) const
	ImageToImageMetric ()
virtual void	PreComputeTransformValues ()
virtual void	SampleFixedImageIndexes (FixedImageSampleContainer &samples) const
virtual void	SampleFixedImageRegion (FixedImageSampleContainer &samples) const
virtual void	SampleFullFixedImageRegion (FixedImageSampleContainer &samples) const
virtual void	SynchronizeTransforms () const
virtual void	TransformPoint (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleOk, double &movingImageValue, ThreadIdType threadId) const
virtual void	TransformPointWithDerivatives (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleOk, double &movingImageValue, ImageDerivativesType &movingImageGradient, ThreadIdType threadId) const
	~ImageToImageMetric () override=default
void	GetValueMultiThreadedInitiate () const
void	GetValueMultiThreadedPostProcessInitiate () const
virtual void	GetValueThread (ThreadIdType threadId) const
virtual void	GetValueThreadPreProcess (ThreadIdType, bool) const
virtual bool	GetValueThreadProcessSample (ThreadIdType, SizeValueType, const MovingImagePointType &, double) const
virtual void	GetValueThreadPostProcess (ThreadIdType, bool) const
Protected Member Functions inherited from itk::SingleValuedCostFunction
	SingleValuedCostFunction ()=default
	~SingleValuedCostFunction () override
Protected Member Functions inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
	CostFunctionTemplate ()=default
	~CostFunctionTemplate () override=default
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &timeStamp)
	~Object () override
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Types
using	DerivativeFunctionType = CentralDifferenceImageFunction< MovingImageType, CoordinateRepresentationType >
using	SpatialSampleContainer = std::vector< SpatialSample >

Private Member Functions
void	CalculateDerivatives (const FixedImagePointType &, DerivativeType &, TransformJacobianType &) const
virtual void	SampleFixedImageDomain (SpatialSampleContainer &samples) const

Private Attributes
DerivativeFunctionType::Pointer	m_DerivativeCalculator {}
double	m_FixedImageStandardDeviation {}
KernelFunctionType::Pointer	m_KernelFunction {}
double	m_MinProbability {}
double	m_MovingImageStandardDeviation {}
unsigned int	m_NumberOfSpatialSamples {}
SpatialSampleContainer	m_SampleA {}
SpatialSampleContainer	m_SampleB {}

Additional Inherited Members
Protected Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
using	BooleanArrayType = std::vector< bool >
using	BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >
using	BSplineParametersOffsetType = FixedArray< SizeValueType, FixedImageType::ImageDimension >
using	BSplineTransformIndexArrayType = typename BSplineTransformType::ParameterIndexArrayType
using	BSplineTransformIndicesArrayType = Array2D< IndexValueType >
using	BSplineTransformType = BSplineBaseTransform< CoordinateRepresentationType, FixedImageType::ImageDimension, Self::DeformationSplineOrder >
using	BSplineTransformWeightsArrayType = Array2D< WeightsValueType >
using	BSplineTransformWeightsType = typename BSplineTransformType::WeightsType
using	DerivativeFunctionType = CentralDifferenceImageFunction< MovingImageType, CoordinateRepresentationType >
using	FixedImageSampleContainer = std::vector< FixedImageSamplePoint >
using	ImageDerivativesType = CovariantVector< double, Self::MovingImageDimension >
using	IndexValueType = typename BSplineTransformIndexArrayType::ValueType
using	MovingImagePointArrayType = std::vector< MovingImagePointType >
using	WeightsValueType = typename BSplineTransformWeightsType::ValueType
Static Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeMultiThreaded (void *workunitInfoAsVoid)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeMultiThreadedPostProcess (void *workunitInfoAsVoid)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueMultiThreaded (void *workunitInfoAsVoid)
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueMultiThreadedPostProcess (void *workunitInfoAsVoid)
Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
BSplineInterpolatorType::Pointer	m_BSplineInterpolator {}
BSplineParametersOffsetType	m_BSplineParametersOffset {}
MovingImagePointArrayType	m_BSplinePreTransformPointsArray {}
BSplineTransformType::Pointer	m_BSplineTransform {}
BSplineTransformIndexArrayType	m_BSplineTransformIndices {}
BSplineTransformIndicesArrayType	m_BSplineTransformIndicesArray {}
BSplineTransformWeightsType	m_BSplineTransformWeights {}
BSplineTransformWeightsArrayType	m_BSplineTransformWeightsArray {}
bool	m_ComputeGradient { true }
DerivativeFunctionType::Pointer	m_DerivativeCalculator {}
FixedImageConstPointer	m_FixedImage {}
FixedImageIndexContainer	m_FixedImageIndexes {}
FixedImageMaskConstPointer	m_FixedImageMask {}
FixedImageSampleContainer	m_FixedImageSamples {}
FixedImagePixelType	m_FixedImageSamplesIntensityThreshold {}
GradientImagePointer	m_GradientImage {}
InterpolatorPointer	m_Interpolator {}
MovingImageConstPointer	m_MovingImage {}
MovingImageMaskConstPointer	m_MovingImageMask {}
SizeValueType	m_NumberOfFixedImageSamples { 50000 }
SizeValueType	m_NumberOfParameters { 0 }
SizeValueType	m_NumberOfPixelsCounted { 0 }
ThreadIdType	m_NumberOfWorkUnits { 1 }
SizeValueType	m_NumBSplineWeights { 0 }
int	m_RandomSeed {}
bool	m_ReseedIterator { false }
std::unique_ptr< BSplineTransformIndexArrayType[]>	m_ThreaderBSplineTransformIndices
std::unique_ptr< BSplineTransformWeightsType[]>	m_ThreaderBSplineTransformWeights
std::unique_ptr< TransformPointer[]>	m_ThreaderTransform
TransformPointer	m_Transform {}
bool	m_UseAllPixels { false }
bool	m_UseCachingOfBSplineWeights { true }
bool	m_UseFixedImageIndexes { false }
bool	m_UseFixedImageSamplesIntensityThreshold { false }
bool	m_UseSequentialSampling { false }
BooleanArrayType	m_WithinBSplineSupportRegionArray {}
MultiThreaderType::Pointer	m_Threader {}
std::unique_ptr< ConstantPointerWrapper >	m_ConstSelfWrapper
std::unique_ptr< unsigned int[]>	m_ThreaderNumberOfMovingImageSamples
bool	m_WithinThreadPreProcess { false }
bool	m_WithinThreadPostProcess { false }
Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount {}
Static Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static constexpr unsigned int	DeformationSplineOrder = 3

Member Typedef Documentation

ConstPointer

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer = SmartPointer<const Self>

Definition at line 103 of file itkMutualInformationImageToImageMetric.h.

DerivativeFunctionType

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DerivativeFunctionType = CentralDifferenceImageFunction<MovingImageType, CoordinateRepresentationType>

private

Definition at line 259 of file itkMutualInformationImageToImageMetric.h.

FixedImageIndexType

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexType = typename FixedImageType::IndexType

Index and Point type alias support

Definition at line 125 of file itkMutualInformationImageToImageMetric.h.

FixedImageIndexValueType

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType

Definition at line 126 of file itkMutualInformationImageToImageMetric.h.

FixedImagePointType

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType = typename TransformType::InputPointType

Definition at line 128 of file itkMutualInformationImageToImageMetric.h.

KernelFunctionType

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::KernelFunctionType = KernelFunctionBase<double>

Definition at line 131 of file itkMutualInformationImageToImageMetric.h.

MovingImageCosntPointer

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageCosntPointer = typename Superclass::MovingImageConstPointer

Definition at line 122 of file itkMutualInformationImageToImageMetric.h.

MovingImageIndexType

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageIndexType = typename MovingImageType::IndexType

Definition at line 127 of file itkMutualInformationImageToImageMetric.h.

MovingImagePointType

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType = typename TransformType::OutputPointType

Definition at line 129 of file itkMutualInformationImageToImageMetric.h.

Pointer

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Pointer = SmartPointer<Self>

Definition at line 102 of file itkMutualInformationImageToImageMetric.h.

Self

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Self = MutualInformationImageToImageMetric

Standard class type aliases.

Definition at line 100 of file itkMutualInformationImageToImageMetric.h.

SpatialSampleContainer

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SpatialSampleContainer = std::vector<SpatialSample>

private

SpatialSampleContainer type alias support

Definition at line 215 of file itkMutualInformationImageToImageMetric.h.

Superclass

template<typename TFixedImage , typename TMovingImage >

using itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Superclass = ImageToImageMetric<TFixedImage, TMovingImage>

Definition at line 101 of file itkMutualInformationImageToImageMetric.h.

Constructor & Destructor Documentation

MutualInformationImageToImageMetric()

template<typename TFixedImage , typename TMovingImage >

itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MutualInformationImageToImageMetric ( )

protected

~MutualInformationImageToImageMetric()

template<typename TFixedImage , typename TMovingImage >

itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::~MutualInformationImageToImageMetric ( )

overrideprotecteddefault

Member Function Documentation

CalculateDerivatives()

template<typename TFixedImage , typename TMovingImage >

void itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CalculateDerivatives ( const FixedImagePointType &  , DerivativeType &  , TransformJacobianType &    ) const

private

GetDerivative()

template<typename TFixedImage , typename TMovingImage >

void itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetDerivative ( const ParametersType &  parameters, DerivativeType &  derivative  ) const

overridevirtual

Get the derivatives of the match measure.

Implements itk::SingleValuedCostFunction.

GetFixedImageStandardDeviation()

template<typename TFixedImage , typename TMovingImage >

virtual double itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageStandardDeviation ( ) const

virtual

Set/Get the fixed image intensity standard deviation. This defines the kernel bandwidth used in the joint probability distribution calculation. Default value is 0.4 which works well for image intensities normalized to a mean of 0 and standard deviation of 1.0. Value is clamped to be always greater than zero.

GetModifiableKernelFunction()

template<typename TFixedImage , typename TMovingImage >

virtual KernelFunctionType* itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetModifiableKernelFunction ( )

virtual

Set/Get the kernel function. This is used to calculate the joint probability distribution. Default is the GaussianKernelFunction.

GetMovingImageStandardDeviation()

template<typename TFixedImage , typename TMovingImage >

virtual const double& itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImageStandardDeviation ( ) const

virtual

Set/Get the moving image intensity standard deviation. This defines the kernel bandwidth used in the joint probability distribution calculation. Default value is 0.4 which works well for image intensities normalized to a mean of 0 and standard deviation of 1.0. Value is clamped to be always greater than zero.

GetNameOfClass()

template<typename TFixedImage , typename TMovingImage >

const char* itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetNameOfClass ( ) const

overridevirtual

See also

LightObject::GetNameOfClass()

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

GetNumberOfSpatialSamples()

template<typename TFixedImage , typename TMovingImage >

virtual const unsigned int& itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfSpatialSamples ( ) const

virtual

Get the number of spatial samples.

GetValue()

template<typename TFixedImage , typename TMovingImage >

MeasureType itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValue ( const ParametersType &  parameters ) const

overridevirtual

Get the value.

Implements itk::SingleValuedCostFunction.

GetValueAndDerivative()

template<typename TFixedImage , typename TMovingImage >

void itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative ( const ParametersType &  parameters, MeasureType &  value, DerivativeType &  derivative  ) const

overridevirtual

Get the value and derivatives for single valued optimizers.

Reimplemented from itk::SingleValuedCostFunction.

New()

template<typename TFixedImage , typename TMovingImage >

static Pointer itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::New ( )

static

Method for creation through the object factory.

PrintSelf()

template<typename TFixedImage , typename TMovingImage >

void itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

SampleFixedImageDomain()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SampleFixedImageDomain ( SpatialSampleContainer &  samples ) const

privatevirtual

Uniformly select samples from the fixed image buffer.

Each sample consists of:

• the fixed image value
• the corresponding moving image value

Warning

Note that this method has a different signature than the one in the base OptImageToImageMetric and therefore they are not intended to provide polymorphism. That is, this function is not overriding the one in the base class.

SetFixedImageStandardDeviation()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageStandardDeviation ( double  _arg )

virtual

Set/Get the fixed image intensity standard deviation. This defines the kernel bandwidth used in the joint probability distribution calculation. Default value is 0.4 which works well for image intensities normalized to a mean of 0 and standard deviation of 1.0. Value is clamped to be always greater than zero.

SetKernelFunction()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetKernelFunction ( KernelFunctionType *  _arg )

virtual

Set/Get the kernel function. This is used to calculate the joint probability distribution. Default is the GaussianKernelFunction.

SetMovingImageStandardDeviation()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImageStandardDeviation ( double  _arg )

virtual

Set/Get the moving image intensity standard deviation. This defines the kernel bandwidth used in the joint probability distribution calculation. Default value is 0.4 which works well for image intensities normalized to a mean of 0 and standard deviation of 1.0. Value is clamped to be always greater than zero.

SetNumberOfSpatialSamples()

template<typename TFixedImage , typename TMovingImage >

void itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetNumberOfSpatialSamples

(

unsigned int

num

)

Set the number of spatial samples. This is the number of image samples used to calculate the joint probability distribution. The number of spatial samples is clamped to be a minimum of 1. Default value is 50.

Member Data Documentation

m_DerivativeCalculator

template<typename TFixedImage , typename TMovingImage >

DerivativeFunctionType::Pointer itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_DerivativeCalculator {}

private

Definition at line 261 of file itkMutualInformationImageToImageMetric.h.

m_FixedImageStandardDeviation

template<typename TFixedImage , typename TMovingImage >

double itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageStandardDeviation {}

private

Definition at line 227 of file itkMutualInformationImageToImageMetric.h.

m_KernelFunction

template<typename TFixedImage , typename TMovingImage >

KernelFunctionType::Pointer itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_KernelFunction {}

private

Definition at line 230 of file itkMutualInformationImageToImageMetric.h.

m_MinProbability

template<typename TFixedImage , typename TMovingImage >

double itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_MinProbability {}

private

Definition at line 228 of file itkMutualInformationImageToImageMetric.h.

m_MovingImageStandardDeviation

template<typename TFixedImage , typename TMovingImage >

double itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageStandardDeviation {}

private

Definition at line 226 of file itkMutualInformationImageToImageMetric.h.

m_NumberOfSpatialSamples

template<typename TFixedImage , typename TMovingImage >

unsigned int itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfSpatialSamples {}

private

Definition at line 225 of file itkMutualInformationImageToImageMetric.h.

m_SampleA

template<typename TFixedImage , typename TMovingImage >

SpatialSampleContainer itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_SampleA {}

mutableprivate

Container to store sample set A - used to approximate the probability density function (pdf).

Definition at line 219 of file itkMutualInformationImageToImageMetric.h.

m_SampleB

template<typename TFixedImage , typename TMovingImage >

SpatialSampleContainer itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_SampleB {}

mutableprivate

Container to store sample set B - used to approximate the mutual information value.

Definition at line 223 of file itkMutualInformationImageToImageMetric.h.

MovingImageDimension

template<typename TFixedImage , typename TMovingImage >

constexpr unsigned int itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDimension = MovingImageType::ImageDimension

staticconstexpr

Enum of the moving image dimension.

Definition at line 134 of file itkMutualInformationImageToImageMetric.h.

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The documentation for this class was generated from the following file:

• itkMutualInformationImageToImageMetric.h