#include <itkThresholdMaximumConnectedComponentsImageFilter.h>

Detailed Description

template<typename TInputImage, typename TOutputImage = TInputImage>
class itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >

Finds the threshold value of an image based on maximizing the number of objects in the image that are larger than a given minimal size.

: This method is based on Topological Stable State Thresholding to calculate the threshold set point. This method is particularly effective when there are a large number of objects in a microscopy image. Compiling in Debug mode and enable the debug flag for this filter to print debug information to see how the filter focuses in on a threshold value. Please see the Insight Journal's MICCAI 2005 workshop for a complete description. References are below.

Parameters: The MinimumObjectSizeInPixels parameter is controlled through the class Get/SetMinimumObjectSizeInPixels() method. Similar to the standard itk::BinaryThresholdImageFilter the Get/SetInside and Get/SetOutside values of the threshold can be set. The GetNumberOfObjects() and GetThresholdValue() methods return the number of objects above the minimum pixel size and the calculated threshold value.

Automatic Thresholding in ITK: There are multiple methods to automatically calculate the threshold intensity value of an image. As of version 4.0, ITK has a Thresholding ( ITKThresholding ) module which contains numerous automatic thresholding methods.implements two of these. Topological Stable State Thresholding works well on images with a large number of objects to be counted.

References:: 1) Urish KL, August J, Huard J. "Unsupervised segmentation for myofiber counting in immunofluorescent microscopy images". Insight Journal. ISC/NA-MIC/MICCAI Workshop on Open-Source Software (2005) https://doi.org/10.54294/h1vbsl 2) Pikaz A, Averbuch, A. "Digital image thresholding based on topological stable-state". Pattern Recognition, 29(5): 829-843, 1996.

: Questions: email Ken Urish at ken.urish(at)gmail.com Please cc the itk list serve for archival purposes.

Definition at line 74 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

Inheritance diagram for itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >:

Public Types
using	ConstPointer = SmartPointer< const Self >

using	InputImagePixelType = typename InputImageType::PixelType

using	InputImagePointer = typename InputImageType::ConstPointer

using	InputImageRegionType = typename InputImageType::RegionType

using	InputImageType = TInputImage

using	OutputImagePixelType = typename OutputImageType::PixelType

using	OutputImagePointer = typename OutputImageType::Pointer

using	OutputImageRegionType = typename OutputImageType::RegionType

using	OutputImageType = TOutputImage

using	OutputPixelType = typename TOutputImage::PixelType

using	PixelType = typename TInputImage::PixelType

using	Pointer = SmartPointer< Self >

using	Self = ThresholdMaximumConnectedComponentsImageFilter

using	Superclass = ImageToImageFilter< TInputImage, TOutputImage >

Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
using	ConstPointer = SmartPointer< const Self >

using	InputImageConstPointer = typename InputImageType::ConstPointer

using	InputImagePixelType = typename InputImageType::PixelType

using	InputImagePointer = typename InputImageType::Pointer

using	InputImageRegionType = typename InputImageType::RegionType

using	InputImageType = TInputImage

using	Pointer = SmartPointer< Self >

using	Self = ImageToImageFilter

using	Superclass = ImageSource< TOutputImage >

Public Types inherited from itk::ImageSource< TOutputImage >
using	ConstPointer = SmartPointer< const Self >

using	DataObjectIdentifierType = Superclass::DataObjectIdentifierType

using	DataObjectPointer = DataObject::Pointer

using	DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType

using	OutputImagePixelType = typename OutputImageType::PixelType

using	OutputImagePointer = typename OutputImageType::Pointer

using	OutputImageRegionType = typename OutputImageType::RegionType

using	OutputImageType = TOutputImage

using	Pointer = SmartPointer< Self >

using	Self = ImageSource

using	Superclass = ProcessObject

Public Types inherited from itk::ProcessObject
using	ConstPointer = SmartPointer< const Self >

using	DataObjectIdentifierType = DataObject::DataObjectIdentifierType

using	DataObjectPointer = DataObject::Pointer

using	DataObjectPointerArray = std::vector< DataObjectPointer >

using	DataObjectPointerArraySizeType = DataObjectPointerArray::size_type

using	MultiThreaderType = MultiThreaderBase

using	NameArray = std::vector< DataObjectIdentifierType >

using	Pointer = SmartPointer< Self >

using	Self = ProcessObject

using	Superclass = Object

Public Types inherited from itk::Object
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = Object

using	Superclass = LightObject

Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = LightObject

Public Member Functions
const char *	GetNameOfClass () const override

virtual SizeValueType	GetNumberOfObjects () const

virtual PixelType	GetThresholdValue () const


virtual void	SetMinimumObjectSizeInPixels (unsigned int _arg)

virtual unsigned int	GetMinimumObjectSizeInPixels () const


virtual void	SetInsideValue (OutputPixelType _arg)

virtual void	SetOutsideValue (OutputPixelType _arg)

virtual void	SetUpperBoundary (PixelType _arg)

virtual OutputPixelType	GetInsideValue () const

virtual OutputPixelType	GetOutsideValue () const

virtual PixelType	GetUpperBoundary () const

Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput () const

const InputImageType *	GetInput (unsigned int idx) const

void	PopBackInput () override

void	PopFrontInput () override

virtual void	PushBackInput (const InputImageType *input)

virtual void	PushFrontInput (const InputImageType *input)

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetInput (const InputImageType *input)

virtual void	SetInput (unsigned int, const TInputImage *image)

virtual void	SetCoordinateTolerance (double _arg)

virtual double	GetCoordinateTolerance () const

virtual void	SetDirectionTolerance (double _arg)

virtual double	GetDirectionTolerance () const

Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)

OutputImageType *	GetOutput ()

const OutputImageType *	GetOutput () const

virtual void	GraftOutput (DataObject *graft)

virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *graft)

virtual void	GraftNthOutput (unsigned int idx, DataObject *graft)

ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override

ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOn ()

virtual void	EnlargeOutputRequestedRegion (DataObject *)

virtual const bool &	GetAbortGenerateData () const

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

NameArray	GetInputNames () const

DataObjectPointerArray	GetInputs ()

MultiThreaderType *	GetMultiThreader () const

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

DataObjectPointerArray	GetOutputs ()

virtual float	GetProgress () const

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

void	IncrementProgress (float increment)

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

void	SetMultiThreader (MultiThreaderType *threader)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float progress)

virtual void	SetReleaseDataFlag (bool val)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag () const

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	SetNumberOfWorkUnits (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfWorkUnits () const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *cmd) const

unsigned long	AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const

LightObject::Pointer	CreateAnother () const override

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag) const

void	SetDebug (bool debugFlag) const

void	SetReferenceCount (int) override

void	UnRegister () const noexcept override

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
Pointer	Clone () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static double	GetGlobalDefaultCoordinateTolerance ()

static double	GetGlobalDefaultDirectionTolerance ()

static void	SetGlobalDefaultCoordinateTolerance (double)

static void	SetGlobalDefaultDirectionTolerance (double)

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool val)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Protected Member Functions
SizeValueType	ComputeConnectedComponents ()

void	GenerateData () override

void	PrintSelf (std::ostream &os, Indent indent) const override

	ThresholdMaximumConnectedComponentsImageFilter ()

	~ThresholdMaximumConnectedComponentsImageFilter () override=default

Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)

virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)

void	GenerateInputRequestedRegion () override

	ImageToImageFilter ()

void	VerifyInputInformation () const override

	~ImageToImageFilter () override=default

virtual void	PushBackInput (const DataObject *input)

virtual void	PushFrontInput (const DataObject *input)

Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()

virtual void	AllocateOutputs ()

virtual void	BeforeThreadedGenerateData ()

void	ClassicMultiThread (ThreadFunctionType callbackFunction)

virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const

	ImageSource ()

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)

	~ImageSource () override=default

virtual void	ThreadedGenerateData (const OutputImageRegionType &region, ThreadIdType threadId)

virtual void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread)

virtual bool	GetDynamicMultiThreading () const

virtual void	SetDynamicMultiThreading (bool _arg)

virtual void	DynamicMultiThreadingOn ()

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

void	AddOptionalInputName (const DataObjectIdentifierType &)

void	AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

virtual void	AddOutput (DataObject *output)

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateOutputInformation ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	PushBackInput (const DataObject *input)

virtual void	PushFrontInput (const DataObject *input)

virtual void	ReleaseInputs ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetOutput (const DataObjectIdentifierType &name, DataObject *output)

virtual void	SetPrimaryInput (DataObject *object)

virtual void	SetPrimaryOutput (DataObject *object)

void	SetRequiredInputNames (const NameArray &)

virtual void	VerifyPreconditions () const

	~ProcessObject () override

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName () const

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName () const

DataObject *	GetOutput (DataObjectPointerArraySizeType i)

const DataObject *	GetOutput (DataObjectPointerArraySizeType i) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

virtual bool	GetThreaderUpdateProgress () const

virtual void	ThreaderUpdateProgressOn ()

virtual void	SetThreaderUpdateProgress (bool arg)

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &timeStamp)

	~Object () override

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Types
using	ConnectedFilterType = ConnectedComponentImageFilter< OutputImageType, FilterImageType >

using	FilterImagePointer = typename FilterImageType::Pointer

using	FilterImageType = itk::Image< FilterPixelType, Self::ImageDimension >

using	FilterPixelType = unsigned int

using	MinMaxCalculatorType = MinimumMaximumImageCalculator< InputImageType >

using	RelabelFilterType = RelabelComponentImageFilter< FilterImageType, FilterImageType >

using	ThresholdFilterType = BinaryThresholdImageFilter< InputImageType, OutputImageType >

Private Attributes
ConnectedFilterType::Pointer	m_ConnectedComponent {}

OutputPixelType	m_InsideValue {}

RelabelFilterType::Pointer	m_LabeledComponent {}

PixelType	m_LowerBoundary {}

unsigned int	m_MinimumObjectSizeInPixels {}

MinMaxCalculatorType::Pointer	m_MinMaxCalculator {}

SizeValueType	m_NumberOfObjects {}

OutputPixelType	m_OutsideValue {}

ThresholdFilterType::Pointer	m_ThresholdFilter {}

PixelType	m_ThresholdValue {}

PixelType	m_UpperBoundary {}

Static Private Attributes
static constexpr unsigned int	ImageDimension = TInputImage::ImageDimension

Additional Inherited Members
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static constexpr unsigned int	InputImageDimension = TInputImage::ImageDimension

static constexpr unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static constexpr unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
using	InputToOutputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::OutputImageDimension, Self::InputImageDimension >

using	OutputToInputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::InputImageDimension, Self::OutputImageDimension >

Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderCallback (void *arg)

Static Protected Member Functions inherited from itk::ProcessObject
template<typename TSourceObject >
static void	MakeRequiredOutputs (TSourceObject &sourceObject, const DataObjectPointerArraySizeType numberOfRequiredOutputs)

static constexpr float	progressFixedToFloat (uint32_t fixed)

static uint32_t	progressFloatToFixed (float f)

Protected Attributes inherited from itk::ImageSource< TOutputImage >
bool	m_DynamicMultiThreading { true }

Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime {}

bool	m_Updating {}

Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount {}

Member Typedef Documentation

◆ ConnectedFilterType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ConnectedFilterType = ConnectedComponentImageFilter<OutputImageType, FilterImageType>

private

Definition at line 197 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ ConstPointer

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ConstPointer = SmartPointer<const Self>

Definition at line 84 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ FilterImagePointer

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::FilterImagePointer = typename FilterImageType::Pointer

private

Definition at line 187 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ FilterImageType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::FilterImageType = itk::Image<FilterPixelType, Self::ImageDimension>

private

Definition at line 185 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ FilterPixelType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::FilterPixelType = unsigned int

private

Typedef for filter pixel type.

Definition at line 181 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ InputImagePixelType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::InputImagePixelType = typename InputImageType::PixelType

Definition at line 146 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ InputImagePointer

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::InputImagePointer = typename InputImageType::ConstPointer

Definition at line 144 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ InputImageRegionType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::InputImageRegionType = typename InputImageType::RegionType

Definition at line 145 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ InputImageType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::InputImageType = TInputImage

Some additional type alias.

Definition at line 143 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ MinMaxCalculatorType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::MinMaxCalculatorType = MinimumMaximumImageCalculator<InputImageType>

private

Definition at line 207 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ OutputImagePixelType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::OutputImagePixelType = typename OutputImageType::PixelType

Definition at line 152 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ OutputImagePointer

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::OutputImagePointer = typename OutputImageType::Pointer

Definition at line 150 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ OutputImageRegionType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::OutputImageRegionType = typename OutputImageType::RegionType

Definition at line 151 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ OutputImageType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::OutputImageType = TOutputImage

Some additional type alias.

Definition at line 149 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ OutputPixelType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::OutputPixelType = typename TOutputImage::PixelType

Definition at line 94 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ PixelType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::PixelType = typename TInputImage::PixelType

Typedef to describe the type of pixel.

Definition at line 93 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ Pointer

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::Pointer = SmartPointer<Self>

Definition at line 83 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ RelabelFilterType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::RelabelFilterType = RelabelComponentImageFilter<FilterImageType, FilterImageType>

private

Definition at line 202 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ Self

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::Self = ThresholdMaximumConnectedComponentsImageFilter

Standard class type aliases.

Definition at line 81 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ Superclass

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::Superclass = ImageToImageFilter<TInputImage, TOutputImage>

Definition at line 82 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

◆ ThresholdFilterType

template<typename TInputImage , typename TOutputImage = TInputImage>

using itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ThresholdFilterType = BinaryThresholdImageFilter<InputImageType, OutputImageType>

private

Definition at line 192 of file itkThresholdMaximumConnectedComponentsImageFilter.h.

Constructor & Destructor Documentation

◆ ThresholdMaximumConnectedComponentsImageFilter()

template<typename TInputImage , typename TOutputImage = TInputImage>

itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ThresholdMaximumConnectedComponentsImageFilter ( )

protected

◆ ~ThresholdMaximumConnectedComponentsImageFilter()

template<typename TInputImage , typename TOutputImage = TInputImage>

itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::~ThresholdMaximumConnectedComponentsImageFilter ( )

overrideprotecteddefault

Member Function Documentation

◆ ComputeConnectedComponents()

template<typename TInputImage , typename TOutputImage = TInputImage>

SizeValueType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::ComputeConnectedComponents ( )

protected

Runs a series of filters that thresholds the image, dilates/erodes for edge enhancement, and counts the number of relabeled connected components

◆ GenerateData()

template<typename TInputImage , typename TOutputImage = TInputImage>

void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GenerateData ( )

overrideprotectedvirtual

Update the filter. It essentially uses a bisection method to search for the threshold setPt that maximizes the number of connected components in the image. The ComputeConnectedComponents does the threshold and then a connected components object count. It is removed from GenerateData to make this all easier to read.

Remove the comments on the output statements to see how the search strategy works.

Reimplemented from itk::ImageSource< TOutputImage >.

◆ GetInsideValue()

template<typename TInputImage , typename TOutputImage = TInputImage>

virtual OutputPixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetInsideValue ( ) const

virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

◆ GetMinimumObjectSizeInPixels()

template<typename TInputImage , typename TOutputImage = TInputImage>

virtual unsigned int itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetMinimumObjectSizeInPixels ( ) const

virtual

The pixel type must support comparison operators. Set the minimum pixel area used to count objects on the image. Thus, only objects that have a pixel area greater than the minimum pixel area will be counted as an object in the optimization portion of this filter. Essentially, it eliminates noise from being counted as an object. The default value is zero.

◆ GetNameOfClass()

template<typename TInputImage , typename TOutputImage = TInputImage>

const char* itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const

overridevirtual

See also: LightObject::GetNameOfClass()

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

◆ GetNumberOfObjects()

template<typename TInputImage , typename TOutputImage = TInputImage>

virtual SizeValueType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetNumberOfObjects ( ) const

virtual

Returns the number of objects in the image. This information is only valid after the filter has executed. Useful if your counting something

◆ GetOutsideValue()

template<typename TInputImage , typename TOutputImage = TInputImage>

virtual OutputPixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetOutsideValue ( ) const

virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

◆ GetThresholdValue()

template<typename TInputImage , typename TOutputImage = TInputImage>

virtual PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetThresholdValue ( ) const

virtual

Returns the automatic threshold value. This information is only valid after the filter has executed.

◆ GetUpperBoundary()

template<typename TInputImage , typename TOutputImage = TInputImage>

virtual PixelType itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::GetUpperBoundary ( ) const

virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

◆ New()

template<typename TInputImage , typename TOutputImage = TInputImage>

static Pointer itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::New ( )

static

Method for creation through the object factory.

◆ PrintSelf()

template<typename TInputImage , typename TOutputImage = TInputImage>

void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

◆ SetInsideValue()

template<typename TInputImage , typename TOutputImage = TInputImage>

virtual void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::SetInsideValue ( OutputPixelType _arg )

virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

◆ SetMinimumObjectSizeInPixels()

template<typename TInputImage , typename TOutputImage = TInputImage>

virtual void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::SetMinimumObjectSizeInPixels ( unsigned int _arg )

virtual

The pixel type must support comparison operators. Set the minimum pixel area used to count objects on the image. Thus, only objects that have a pixel area greater than the minimum pixel area will be counted as an object in the optimization portion of this filter. Essentially, it eliminates noise from being counted as an object. The default value is zero.

◆ SetOutsideValue()

template<typename TInputImage , typename TOutputImage = TInputImage>

virtual void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::SetOutsideValue ( OutputPixelType _arg )

virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.

◆ SetUpperBoundary()

template<typename TInputImage , typename TOutputImage = TInputImage>

virtual void itk::ThresholdMaximumConnectedComponentsImageFilter< TInputImage, TOutputImage >::SetUpperBoundary ( PixelType _arg )

virtual

The following Set/Get methods are for the binary threshold function. This class automatically calculates the lower threshold boundary. The upper threshold boundary, inside value, and outside value can be defined by the user, however the standard values are used as default if not set by the user. The default value of the: Inside value is the maximum pixel type intensity. Outside value is the minimum pixel type intensity. Upper threshold boundary is the maximum pixel type intensity.