ITK  4.2.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Attributes | Protected Member Functions | Protected Attributes | Private Member Functions | Private Attributes
itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter > Class Template Reference
Module ITKGPUFiniteDifference

#include <itkGPUFiniteDifferenceImageFilter.h>

+ Inheritance diagram for itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >:
+ Collaboration diagram for itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >:

List of all members.

Public Types

typedef SmartPointer< const Self > ConstPointer
typedef TParentImageFilter CPUSuperclass
enum  FilterStateType {
  UNINITIALIZED = 0,
  INITIALIZED = 1
}
typedef
GPUFiniteDifferenceFunction
< TOutputImage >
::DifferenceFunctionType 		FiniteDifferenceFunctionType
typedef GPUInPlaceImageFilter
< TInputImage, TOutputImage,
TParentImageFilter > 		GPUSuperclass
typedef TInputImage InputImageType
typedef TInputImage::PixelType InputPixelType
typedef NumericTraits
< InputPixelType >::ValueType 		InputPixelValueType
typedef
FiniteDifferenceFunctionType::NeighborhoodScalesType 		NeighborhoodScalesType
typedef TOutputImage OutputImageType
typedef TOutputImage::PixelType OutputPixelType
typedef NumericTraits
< OutputPixelType >::ValueType 		OutputPixelValueType
typedef OutputPixelType PixelType
typedef SmartPointer< Self > Pointer
typedef
FiniteDifferenceFunctionType::RadiusType 		RadiusType
typedef
GPUFiniteDifferenceImageFilter 		Self
typedef
FiniteDifferenceFunctionType::TimeStepType 		TimeStepType
- Public Types inherited from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
typedef
GPUSuperclass::OutputImagePixelType 		OutputImagePixelType
typedef
GPUSuperclass::OutputImagePointer 		OutputImagePointer
typedef
GPUSuperclass::OutputImageRegionType 		OutputImageRegionType
typedef InputImageType::Pointer InputImagePointer
typedef
InputImageType::ConstPointer 		InputImageConstPointer
typedef InputImageType::RegionType InputImageRegionType
typedef InputImageType::PixelType InputImagePixelType
- Public Types inherited from itk::GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter >
typedef
Superclass::DataObjectIdentifierType 		DataObjectIdentifierType
typedef TParentImageFilter Superclass

Public Member Functions

virtual const char * GetNameOfClass () const
virtual void SetDifferenceFunction (FiniteDifferenceFunctionType *_arg)
void SetStateToInitialized ()
void SetStateToUninitialized ()
virtual const
FiniteDifferenceFunctionType::Pointer & 		GetDifferenceFunction () const
virtual void SetUseImageSpacing (bool _arg)
virtual void UseImageSpacingOn ()
virtual void UseImageSpacingOff ()
virtual const bool & GetUseImageSpacing ()
virtual void SetMaximumRMSError (double _arg)
virtual const double & GetMaximumRMSError ()
virtual void SetRMSChange (double _arg)
virtual const double & GetRMSChange ()
virtual void SetState (FilterStateType _arg)
virtual const FilterStateType & GetState ()
virtual void SetManualReinitialization (bool _arg)
virtual const bool & GetManualReinitialization ()
virtual void ManualReinitializationOn ()
virtual void ManualReinitializationOff ()
virtual const TimeProbe & GetInitTime ()
virtual const TimeProbe & GetComputeUpdateTime ()
virtual const TimeProbe & GetApplyUpdateTime ()
virtual const TimeProbe & GetSmoothFieldTime ()

Static Public Attributes

static const unsigned int ImageDimension = OutputImageType::ImageDimension
- Static Public Attributes inherited from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
static const unsigned int InputImageDimension = TInputImage::ImageDimension
static const unsigned int OutputImageDimension = TOutputImage::ImageDimension
- Static Public Attributes inherited from itk::GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter >

Protected Member Functions

virtual void AllocateUpdateBuffer ()=0
virtual void CopyInputToOutput ()=0
virtual void GenerateInputRequestedRegion ()
virtual void GPUApplyUpdate (const TimeStepType &dt)=0
virtual TimeStepType GPUCalculateChange ()=0
 GPUFiniteDifferenceImageFilter ()
virtual void GPUGenerateData ()
virtual bool Halt ()
virtual void Initialize ()
virtual void InitializeIteration ()
virtual void PostProcessOutput ()
void PrintSelf (std::ostream &os, Indent indent) const
virtual TimeStepType ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const
virtual void SetElapsedIterations (IdentifierType _arg)
virtual bool ThreadedHalt (void *)
 ~GPUFiniteDifferenceImageFilter ()
- Protected Member Functions inherited from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >
virtual void AllocateOutputs ()
virtual void ReleaseInputs ()
 GPUInPlaceImageFilter ()
 ~GPUInPlaceImageFilter ()
- Protected Member Functions inherited from itk::GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter >
 GPUImageToImageFilter ()
 ~GPUImageToImageFilter ()

Protected Attributes

TimeProbe m_ApplyUpdateTime
TimeProbe m_ComputeUpdateTime
TimeProbe m_InitTime
bool m_ManualReinitialization
double m_MaximumRMSError
double m_RMSChange
TimeProbe m_SmoothFieldTime

Private Member Functions

 GPUFiniteDifferenceImageFilter (const Self &)
void InitializeFunctionCoefficients ()
void operator= (const Self &)

Private Attributes

FiniteDifferenceFunctionType::Pointer m_DifferenceFunction
FilterStateType m_State
bool m_UseImageSpacing

Detailed Description

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
class itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >

Base class for GPU Finite Difference Image Filters.

See also:
GPUDenseFiniteDifferenceImageFilter

Definition at line 37 of file itkGPUFiniteDifferenceImageFilter.h.

Member Typedef Documentation

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef SmartPointer< const Self > itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::ConstPointer

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, itk::GPUGradientAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 47 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef TParentImageFilter itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::CPUSuperclass

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 45 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef GPUFiniteDifferenceFunction< TOutputImage >::DifferenceFunctionType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::FiniteDifferenceFunctionType

The value type of the time step. This is distinct from PixelType because PixelType may often be a vector value, while the TimeStep is a scalar value.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >.

Definition at line 71 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter > itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUSuperclass

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, itk::GPUGradientAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 44 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef TInputImage itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::InputImageType

Input and output image types.

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 50 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef TInputImage::PixelType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::InputPixelType

Definition at line 61 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef NumericTraits< InputPixelType >::ValueType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::InputPixelValueType

Definition at line 66 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef FiniteDifferenceFunctionType::NeighborhoodScalesType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::NeighborhoodScalesType

Definition at line 76 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef TOutputImage itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::OutputImageType

Superclass typedefs.

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 54 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef TOutputImage::PixelType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::OutputPixelType

The pixel type of the output image will be used in computations.

Definition at line 60 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef NumericTraits< OutputPixelType >::ValueType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::OutputPixelValueType

Extract value type in case the pixel is of vector type

Definition at line 65 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef OutputPixelType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::PixelType

Reimplemented in itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 62 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef SmartPointer< Self > itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::Pointer

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, itk::GPUGradientAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 46 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef FiniteDifferenceFunctionType::RadiusType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::RadiusType

Definition at line 75 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef GPUFiniteDifferenceImageFilter itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::Self

Standard class typedefs.

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, itk::GPUGradientAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 43 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
typedef FiniteDifferenceFunctionType::TimeStepType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::TimeStepType

Reimplemented in itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 74 of file itkGPUFiniteDifferenceImageFilter.h.

Member Enumeration Documentation

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
enum itk::GPUFiniteDifferenceImageFilter::FilterStateType
Enumerator:
UNINITIALIZED 
INITIALIZED 

Definition at line 90 of file itkGPUFiniteDifferenceImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUFiniteDifferenceImageFilter ( )
protected
template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::~GPUFiniteDifferenceImageFilter ( )
protected
template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUFiniteDifferenceImageFilter ( const Self &  )
private

Member Function Documentation

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::AllocateUpdateBuffer ( )
protectedpure virtual

This method allocates a temporary update container in the subclass.

Implemented in itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::CopyInputToOutput ( )
protectedpure virtual

This method can be defined in subclasses as needed to copy the input to the output. See DenseFiniteDifferenceImageFilter for an implementation.

Implemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GenerateInputRequestedRegion ( )
protectedvirtual

FiniteDifferenceImageFilter needs a larger input requested region than the output requested region. As such, we need to provide an implementation for GenerateInputRequestedRegion() in order to inform the pipeline execution model.

The filter will ask for a padded region to perform its neighborhood calculations. If no such region is available, the boundaries will be handled as described in the FiniteDifferenceFunction defined by the subclass.
See also:
ProcessObject::GenerateInputRequestedRegion()

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const TimeProbe& itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetApplyUpdateTime ( )
virtual

Methods to get timers

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const TimeProbe& itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetComputeUpdateTime ( )
virtual

Methods to get timers

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const FiniteDifferenceFunctionType ::Pointer& itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetDifferenceFunction ( ) const
virtual

This method returns a pointer to a FiniteDifferenceFunction object that will be used by the filter to calculate updates at image pixels.

Returns:
A FiniteDifferenceObject pointer.
template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const TimeProbe& itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetInitTime ( )
virtual

Methods to get timers

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const bool& itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetManualReinitialization ( )
virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const double& itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetMaximumRMSError ( )
virtual

Set/Get the maximum error allowed in the solution. This may not be defined for all solvers and its meaning may change with the application.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const char* itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods)

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, itk::GPUGradientAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const double& itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetRMSChange ( )
virtual

Set/Get the root mean squared change of the previous iteration. May not be used by all solvers.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const TimeProbe& itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetSmoothFieldTime ( )
virtual

Methods to get timers

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const FilterStateType& itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetState ( )
virtual

Set/Get the state of the filter.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual const bool& itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GetUseImageSpacing ( )
virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOff.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUApplyUpdate ( const TimeStepType &  dt)
protectedpure virtual

This method is defined by a subclass to apply changes to the output from an update buffer and a time step value "dt".

Parameters:
dtTime step value.
template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual TimeStepType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUCalculateChange ( )
protectedpure virtual

This method is defined by a subclass to populate an update buffer with changes for the pixels in the output. It returns a time step value to be used for the update.

Returns:
A time step to use in updating the output with the changes calculated from this method.

Implemented in itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::GPUGenerateData ( )
protectedvirtual

This is the default, high-level algorithm for calculating finite difference solutions. It calls virtual methods in its subclasses to implement the major steps of the algorithm.

Reimplemented from itk::GPUImageToImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual bool itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::Halt ( )
protectedvirtual

This method returns true when the current iterative solution of the equation has met the criteria to stop solving. Defined by a subclass.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::Initialize ( void  )
inlineprotectedvirtual

This method is optionally defined by a subclass and is called before the loop of iterations of calculate_change & upate. It does the global initialization, i.e. in the SparseFieldLevelSetImageFilter, initialize the list of layers.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >.

Definition at line 218 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::InitializeFunctionCoefficients ( )
private

Initialize the values of the Function coefficients. This function will also take care of checking whether the image spacing should be taken into account or not.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::InitializeIteration ( )
inlineprotectedvirtual

This method is optionally defined by a subclass and is called immediately prior to each iterative CalculateChange-ApplyUpdate cycle. It can be used to set global variables needed for the next iteration (ie. average gradient magnitude of the image in anisotropic diffusion functions), or otherwise prepare for the next iteration.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 227 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::ManualReinitializationOff ( )
virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::ManualReinitializationOn ( )
virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::operator= ( const Self &  )
private

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, itk::GPUGradientAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::PostProcessOutput ( )
inlineprotectedvirtual

This method is called after the solution has been generated to allow subclasses to apply some further processing to the output.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >.

Definition at line 249 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Reimplemented from itk::GPUInPlaceImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDemonsRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual TimeStepType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::ResolveTimeStep ( const std::vector< TimeStepType > &  timeStepList,
const std::vector< bool > &  valid 
) const
protectedvirtual

Virtual method for resolving a single time step from a set of time steps returned from processing threads.

Returns:
Time step (dt) for the iteration update based on a list of time steps generated from the threaded calculated change method (one for each region processed).
Parameters:
timeStepListThe set of time changes compiled from all the threaded calls to ThreadedGenerateData.
validThe set of flags indicating which of "list" elements are valid

The default is to return the minimum value in the list.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::SetDifferenceFunction ( FiniteDifferenceFunctionType *  _arg)
virtual

This method sets the pointer to a FiniteDifferenceFunction object that will be used by the filter to calculate updates at image pixels.

Returns:
A FiniteDifferenceObject pointer.
template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::SetElapsedIterations ( IdentifierType  _arg)
protectedvirtual

Set the number of elapsed iterations of the filter.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::SetManualReinitialization ( bool  _arg)
virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::SetMaximumRMSError ( double  _arg)
virtual

Set/Get the maximum error allowed in the solution. This may not be defined for all solvers and its meaning may change with the application.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::SetRMSChange ( double  _arg)
virtual

Set/Get the root mean squared change of the previous iteration. May not be used by all solvers.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::SetState ( FilterStateType  _arg)
virtual

Set/Get the state of the filter.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::SetStateToInitialized ( )
inline

Set the state of the filter to INITIALIZED

Definition at line 112 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::SetStateToUninitialized ( )
inline

Set the state of the filter to UNINITIALIZED

Definition at line 118 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::SetUseImageSpacing ( bool  _arg)
virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOff.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual bool itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::ThreadedHalt ( void *  )
inlineprotectedvirtual

This method is similar to Halt(), and its default implementation in this class is simply to call Halt(). However, this method takes as a parameter a void pointer to the MultiThreader::ThreadInfoStruct structure. If you override this method instead of overriding Halt, you will be able to get the current thread ID and handle the Halt method accordingly. This is useful if you are doing a lot of processing in Halt that you don't want parallelized. Notice that ThreadedHalt is only called by the multithreaded filters, so you still should implement Halt, just in case a non-threaded filter is used.

Definition at line 209 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::UseImageSpacingOff ( )
virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOff.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
virtual void itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::UseImageSpacingOn ( )
virtual

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOff.

Member Data Documentation

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
const unsigned int itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::ImageDimension = OutputImageType::ImageDimension
static

Dimensionality of input and output data is assumed to be the same.

Reimplemented in itk::GPUPDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >, itk::GPUDenseFiniteDifferenceImageFilter< TDeformationField, TDeformationField, TParentImageFilter >, itk::GPUGradientAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >, and itk::GPUAnisotropicDiffusionImageFilter< TInputImage, TOutputImage, TParentImageFilter >.

Definition at line 57 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
TimeProbe itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_ApplyUpdateTime
protected

Definition at line 271 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
TimeProbe itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_ComputeUpdateTime
protected

Definition at line 271 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
FiniteDifferenceFunctionType::Pointer itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_DifferenceFunction
private

The function that will be used in calculating updates for each pixel.

Definition at line 284 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
TimeProbe itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_InitTime
protected

Timers for statistics

Definition at line 271 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
bool itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_ManualReinitialization
protected

The maximum number of iterations this filter will run A counter for keeping track of the number of elapsed iterations during filtering. Indicates whether the filter automatically resets to UNINITIALIZED state after completing, or whether filter must be manually reset

Definition at line 253 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
double itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_MaximumRMSError
protected

Definition at line 268 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
double itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_RMSChange
protected

Definition at line 267 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
TimeProbe itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_SmoothFieldTime
protected

Definition at line 271 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
FilterStateType itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_State
private

State that the filter is in, i.e. UNINITIALIZED or INITIALIZED

Definition at line 291 of file itkGPUFiniteDifferenceImageFilter.h.

template<class TInputImage, class TOutputImage, class TParentImageFilter = FiniteDifferenceImageFilter< TInputImage, TOutputImage >>
bool itk::GPUFiniteDifferenceImageFilter< TInputImage, TOutputImage, TParentImageFilter >::m_UseImageSpacing
private

Control whether derivatives use spacing of the input image in its calculation.

Definition at line 288 of file itkGPUFiniteDifferenceImageFilter.h.

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