#include <itkHistogramThresholdImageFilter.h>

Inheritance diagram for itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >:

Collaboration diagram for itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >:

Public Types
typedef CalculatorType::Pointer	CalculatorPointer
typedef HistogramThresholdCalculator < HistogramType, InputPixelType >	CalculatorType
typedef SmartPointer< const Self >	ConstPointer
typedef HistogramType::ConstPointer	HistogramConstPointer
typedef HistogramType::MeasurementType	HistogramMeasurementType
typedef HistogramType::MeasurementVectorType	HistogramMeasurementVectorType
typedef HistogramType::Pointer	HistogramPointer
typedef HistogramType::SizeType	HistogramSizeType
typedef Statistics::Histogram < ValueRealType >	HistogramType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef TInputImage	InputImageType
typedef InputImageType::IndexType	InputIndexType
typedef InputImageType::PixelType	InputPixelType
typedef InputImageType::SizeType	InputSizeType
typedef MaskImageType::Pointer	MaskImagePointer
typedef MaskImageType::RegionType	MaskImageRegionType
typedef TMaskImage	MaskImageType
typedef MaskImageType::IndexType	MaskIndexType
typedef MaskImageType::PixelType	MaskPixelType
typedef MaskImageType::SizeType	MaskSizeType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef TOutputImage	OutputImageType
typedef OutputImageType::IndexType	OutputIndexType
typedef OutputImageType::PixelType	OutputPixelType
typedef OutputImageType::SizeType	OutputSizeType
typedef SmartPointer< Self >	Pointer
typedef HistogramThresholdImageFilter	Self
typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass
typedef NumericTraits < ValueType >::RealType	ValueRealType
typedef NumericTraits < InputPixelType >::ValueType	ValueType
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
Public Types inherited from itk::ImageSource< TOutputImage >
typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
Public Types inherited from itk::ProcessObject
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef std::vector < DataObjectIdentifierType >	NameArray
Public Types inherited from itk::Object
Public Types inherited from itk::LightObject

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual OutputPixelType	GetInsideValue () const
const MaskImageType *	GetMaskImage () const
virtual const char *	GetNameOfClass () const
virtual OutputPixelType	GetOutsideValue () const
virtual InputPixelType	GetThreshold () const
void	SetInput1 (const TInputImage *input)
void	SetInput2 (const TMaskImage *input)
virtual void	SetInsideValue (OutputPixelType _arg)
void	SetMaskImage (const TMaskImage *input)
virtual void	SetOutsideValue (OutputPixelType _arg)
	typedef (Concept::EqualityComparable< OutputPixelType >) OutputEqualityComparableCheck
	typedef (Concept::OStreamWritable< InputPixelType >) InputOStreamWritableCheck
	typedef (Concept::OStreamWritable< OutputPixelType >) OutputOStreamWritableCheck

virtual void	SetNumberOfHistogramBins (unsigned int _arg)
virtual unsigned int	GetNumberOfHistogramBins () const

virtual void	SetAutoMinimumMaximum (bool _arg)
virtual bool	GetAutoMinimumMaximum () const
virtual void	AutoMinimumMaximumOn ()
virtual void	AutoMinimumMaximumOff ()

virtual void	SetMaskOutput (bool _arg)
virtual bool	GetMaskOutput () const
virtual void	MaskOutputOn ()
virtual void	MaskOutputOff ()

virtual void	SetMaskValue (MaskPixelType _arg)
virtual MaskPixelType	GetMaskValue () const

virtual void	SetCalculator (CalculatorType *_arg)
virtual CalculatorType *	GetCalculator ()
Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput (void) const
const InputImageType *	GetInput (unsigned int idx) const
virtual void	PopBackInput ()
virtual void	PopFrontInput ()
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const TInputImage *image)
Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageType *	GetOutput (void)
const OutputImageType *	GetOutput (void) const
virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData ()
NameArray	GetInputNames () const
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
virtual const float &	GetProgress ()
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	SetProgress (float _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float amount)
DataObjectPointerArray	GetInputs ()
DataObjectPointerArray	GetOutputs ()
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag ()
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads ()
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Attributes

static const unsigned int	InputImageDimension = InputImageType::ImageDimension
static const unsigned int	OutputImageDimension = OutputImageType::ImageDimension
static const unsigned int	MaskImageDimension = MaskImageType::ImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
Static Public Attributes inherited from itk::ImageSource< TOutputImage >

Protected Member Functions
void	GenerateData ()
void	GenerateInputRequestedRegion ()

	HistogramThresholdImageFilter ()
	~HistogramThresholdImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
	ImageToImageFilter ()
virtual void	VerifyInputInformation ()
	~ImageToImageFilter ()
void	PushBackInput (const DataObject *input)
void	PushFrontInput (const DataObject *input)
Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
virtual void	BeforeThreadedGenerateData ()
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual	~ImageSource ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()
bool	IsIndexedName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType	MakeNameFromIndex (DataObjectPointerArraySizeType) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
DataObject *	GetInput (DataObjectPointerArraySizeType)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Protected Attributes
bool	m_AutoMinimumMaximum
CalculatorPointer	m_Calculator
OutputPixelType	m_InsideValue
bool	m_MaskOutput
MaskPixelType	m_MaskValue
unsigned	m_NumberOfHistogramBins
OutputPixelType	m_OutsideValue
InputPixelType	m_Threshold

Private Member Functions
	HistogramThresholdImageFilter (const Self &)
void	operator= (const Self &)

Additional Inherited Members
Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType

Detailed Description

template<class TInputImage, class TOutputImage, class TMaskImage = TOutputImage>
class itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >

Threshold an image using a HistogramThresholdCalculator.

This filter creates a binary thresholded image that separates an image into foreground and background components. The filter computes the threshold using a user provided HistogramThresholdCalculator and applies that theshold to the input image using the BinaryThresholdImageFilter.

The filter also has the option of providing a mask, in which case the histogram and therefore the threshold is computed from the parts of the mask with values indicated by MaskValue. The output image is, by default, masked by the same image. This output masking can be disabled using SetMaskOutput(false). Note that there is an inconsistency here. The MaskImageFilter (used internally) masks by non zero values, where as the MaskedImageToHistogramFilter uses explicit values. If this doesn't match your usage then the output masking will need to be managed by the user.

Author:: Richard Beare. Department of Medicine, Monash University, Melbourne, Australia.; Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: http://hdl.handle.net/10380/3279 or http://www.insight-journal.org/browse/publication/811

Definition at line 60 of file itkHistogramThresholdImageFilter.h.

Member Typedef Documentation

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef CalculatorType::Pointer itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::CalculatorPointer

Definition at line 110 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef HistogramThresholdCalculator<HistogramType, InputPixelType> itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::CalculatorType

Definition at line 109 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef SmartPointer<const Self> itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::ConstPointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 68 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef HistogramType::ConstPointer itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::HistogramConstPointer

Definition at line 104 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef HistogramType::MeasurementType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::HistogramMeasurementType

Definition at line 106 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef HistogramType::MeasurementVectorType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::HistogramMeasurementVectorType

Definition at line 107 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef HistogramType::Pointer itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::HistogramPointer

Definition at line 103 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef HistogramType::SizeType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::HistogramSizeType

Definition at line 105 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef Statistics::Histogram< ValueRealType > itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::HistogramType

Definition at line 102 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef InputImageType::Pointer itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::InputImagePointer

Image related typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 86 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef InputImageType::RegionType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::InputImageRegionType

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 92 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef TInputImage itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::InputImageType

Some convenient typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 74 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef InputImageType::IndexType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::InputIndexType

Definition at line 91 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef InputImageType::PixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::InputPixelType

Image pixel value typedef.

Definition at line 81 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef InputImageType::SizeType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::InputSizeType

Definition at line 90 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef MaskImageType::Pointer itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::MaskImagePointer

Definition at line 88 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef MaskImageType::RegionType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::MaskImageRegionType

Definition at line 98 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef TMaskImage itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::MaskImageType

Definition at line 78 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef MaskImageType::IndexType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::MaskIndexType

Definition at line 97 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef MaskImageType::PixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::MaskPixelType

Definition at line 83 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef MaskImageType::SizeType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::MaskSizeType

Definition at line 96 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef OutputImageType::Pointer itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::OutputImagePointer

Reimplemented from itk::ImageSource< TOutputImage >.

Definition at line 87 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef OutputImageType::RegionType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::OutputImageRegionType

Superclass typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 95 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef TOutputImage itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::OutputImageType

Some convenient typedefs.

Reimplemented from itk::ImageSource< TOutputImage >.

Definition at line 77 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef OutputImageType::IndexType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::OutputIndexType

Definition at line 94 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef OutputImageType::PixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::OutputPixelType

Definition at line 82 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef OutputImageType::SizeType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::OutputSizeType

Definition at line 93 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef SmartPointer<Self> itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::Pointer

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 67 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef HistogramThresholdImageFilter itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::Self

Standard Self typedef

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 65 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef ImageToImageFilter<TInputImage,TOutputImage> itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::Superclass

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 66 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef NumericTraits< ValueType >::RealType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::ValueRealType

Definition at line 101 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

typedef NumericTraits< InputPixelType >::ValueType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::ValueType

Definition at line 100 of file itkHistogramThresholdImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::HistogramThresholdImageFilter ( )

protected

End concept checking

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::~HistogramThresholdImageFilter ( )

inlineprotected

End concept checking

Definition at line 211 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::HistogramThresholdImageFilter ( const Self & )

private

Member Function Documentation

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::AutoMinimumMaximumOff ( )

virtual

Does histogram generator compute min and max from data? Default is false for all but char types

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::AutoMinimumMaximumOn ( )

virtual

Does histogram generator compute min and max from data? Default is false for all but char types

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual::itk::LightObject::Pointer itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::CreateAnother ( void ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GenerateData ( )

protectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See also:: ThreadedGenerateData()

Reimplemented from itk::ImageSource< TOutputImage >.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GenerateInputRequestedRegion ( )

protectedvirtual

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierarchy. Up till now, the base assumption has been that the largest possible region will be requested of the input.

This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.

See also:: ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual bool itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GetAutoMinimumMaximum ( ) const

virtual

Does histogram generator compute min and max from data? Default is false for all but char types

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual CalculatorType* itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GetCalculator ( )

virtual

Set/Get the calculator to use to compute the threshold

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual OutputPixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GetInsideValue ( ) const

virtual

Get the "inside" pixel value.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

const MaskImageType* itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GetMaskImage ( ) const

inline

Get the marker image

Definition at line 131 of file itkHistogramThresholdImageFilter.h.

References itk::ProcessObject::GetInput().

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual bool itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GetMaskOutput ( ) const

virtual

Do you want the output to be masked by the mask used in histogram construction. Only relevant if masking is in use. Default is true.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual MaskPixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GetMaskValue ( ) const

virtual

The value in the mask image, if used, indicating voxels that should be included. Default is the max of pixel type, as in the MaskedImageToHistogramFilter

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual const char* itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GetNameOfClass ( ) const

virtual

Runtime information support.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual unsigned int itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GetNumberOfHistogramBins ( ) const

virtual

Set the number of histogram bins

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual OutputPixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GetOutsideValue ( ) const

virtual

Get the "outside" pixel value.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual InputPixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::GetThreshold ( ) const

virtual

Get the computed threshold.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::MaskOutputOff ( )

virtual

Do you want the output to be masked by the mask used in histogram construction. Only relevant if masking is in use. Default is true.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::MaskOutputOn ( )

virtual

Do you want the output to be masked by the mask used in histogram construction. Only relevant if masking is in use. Default is true.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

static Pointer itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::New ( )

static

Method for creation through the object factory.

Reimplemented from itk::Object.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::operator= ( const Self & )

private

PushBackInput(), PushFronInput() in the public section force the input to be the type expected by an ImageToImageFilter. However, these methods end of "hiding" the versions from the superclass (ProcessObject) whose arguments are DataObjects. Here, we re-expose the versions from ProcessObject to avoid warnings about hiding methods from the superclass.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

End concept checking

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::IntermodesThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::SetAutoMinimumMaximum ( bool _arg )

virtual

Does histogram generator compute min and max from data? Default is false for all but char types

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::SetCalculator ( CalculatorType * _arg )

virtual

Set/Get the calculator to use to compute the threshold

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::SetInput1 ( const TInputImage * input )

inline

Set the input image

Definition at line 138 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::SetInput2 ( const TMaskImage * input )

inline

Set the marker image

Definition at line 144 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::SetInsideValue ( OutputPixelType _arg )

virtual

Set the "inside" pixel value. The default value NumericTraits<OutputPixelType>::max()

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::SetMaskImage ( const TMaskImage * input )

inline

Set and Get the mask image Set the marker image

Definition at line 124 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::SetMaskOutput ( bool _arg )

virtual

Do you want the output to be masked by the mask used in histogram construction. Only relevant if masking is in use. Default is true.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::SetMaskValue ( MaskPixelType _arg )

virtual

The value in the mask image, if used, indicating voxels that should be included. Default is the max of pixel type, as in the MaskedImageToHistogramFilter

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::SetNumberOfHistogramBins ( unsigned int _arg )

virtual

Set the number of histogram bins

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

virtual void itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::SetOutsideValue ( OutputPixelType _arg )

virtual

Set the "outside" pixel value. The default value NumericTraits<OutputPixelType>::Zero.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::typedef ( Concept::EqualityComparable< OutputPixelType > )

Begin concept checking This class requires OutputEqualityComparableCheck in the form of (Concept::EqualityComparable<OutputPixelType>)

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::typedef ( Concept::OStreamWritable< InputPixelType > )

This class requires InputOStreamWritableCheck in the form of (Concept::OStreamWritable<InputPixelType>)

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::typedef ( Concept::OStreamWritable< OutputPixelType > )

This class requires OutputOStreamWritableCheck in the form of (Concept::OStreamWritable<OutputPixelType>)

Member Data Documentation

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

const unsigned int itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::InputImageDimension = InputImageType::ImageDimension

static

Image related typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 114 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

bool itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::m_AutoMinimumMaximum

protected

Definition at line 224 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

CalculatorPointer itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::m_Calculator

protected

Definition at line 222 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

OutputPixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::m_InsideValue

protected

Definition at line 218 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

bool itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::m_MaskOutput

protected

Definition at line 225 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

MaskPixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::m_MaskValue

protected

Definition at line 221 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

unsigned itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::m_NumberOfHistogramBins

protected

Definition at line 223 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

OutputPixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::m_OutsideValue

protected

Definition at line 219 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

InputPixelType itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::m_Threshold

protected

Definition at line 220 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

const unsigned int itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::MaskImageDimension = MaskImageType::ImageDimension

static

Image related typedefs.

Definition at line 118 of file itkHistogramThresholdImageFilter.h.

template<class TInputImage , class TOutputImage , class TMaskImage = TOutputImage>

const unsigned int itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >::OutputImageDimension = OutputImageType::ImageDimension

static

Image related typedefs.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.