#include <itkRenyiEntropyThresholdImageFilter.h>

Inheritance diagram for itk::RenyiEntropyThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >:

Collaboration diagram for itk::RenyiEntropyThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >:

Public Types
typedef RenyiEntropyThresholdCalculator < HistogramType, InputPixelType >	CalculatorType
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::HistogramType	HistogramType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef TInputImage	InputImageType
typedef InputImageType::IndexType	InputIndexType
typedef InputImageType::PixelType	InputPixelType
typedef InputImageType::SizeType	InputSizeType
typedef MaskImageType::RegionType	MaskImageRegionType
typedef TMaskImage	MaskImageType
typedef MaskImageType::IndexType	MaskIndexType
typedef MaskImageType::PixelType	MaskPixelType
typedef MaskImageType::SizeType	MaskSizeType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef TOutputImage	OutputImageType
typedef OutputImageType::IndexType	OutputIndexType
typedef OutputImageType::PixelType	OutputPixelType
typedef OutputImageType::SizeType	OutputSizeType
typedef SmartPointer< Self >	Pointer
typedef RenyiEntropyThresholdImageFilter	Self
typedef HistogramThresholdImageFilter < TInputImage, TOutputImage, TMaskImage >	Superclass
Public Types inherited from itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >
typedef CalculatorType::Pointer	CalculatorPointer
typedef HistogramType::ConstPointer	HistogramConstPointer
typedef HistogramType::MeasurementType	HistogramMeasurementType
typedef HistogramType::MeasurementVectorType	HistogramMeasurementVectorType
typedef HistogramType::Pointer	HistogramPointer
typedef HistogramType::SizeType	HistogramSizeType
typedef MaskImageType::Pointer	MaskImagePointer
typedef NumericTraits < ValueType >::RealType	ValueRealType
typedef NumericTraits < InputPixelType >::ValueType	ValueType
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
Public Types inherited from itk::ImageSource< TOutputImage >
typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
Public Types inherited from itk::ProcessObject
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef std::vector < DataObjectIdentifierType >	NameArray
Public Types inherited from itk::Object
Public Types inherited from itk::LightObject

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const char *	GetNameOfClass () const
Public Member Functions inherited from itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >
virtual OutputPixelType	GetInsideValue () const
const MaskImageType *	GetMaskImage () const
virtual OutputPixelType	GetOutsideValue () const
virtual InputPixelType	GetThreshold () const
void	SetInput1 (const TInputImage *input)
void	SetInput2 (const TMaskImage *input)
virtual void	SetInsideValue (OutputPixelType _arg)
void	SetMaskImage (const TMaskImage *input)
virtual void	SetOutsideValue (OutputPixelType _arg)
	typedef (Concept::EqualityComparable< OutputPixelType >) OutputEqualityComparableCheck
	typedef (Concept::OStreamWritable< InputPixelType >) InputOStreamWritableCheck
	typedef (Concept::OStreamWritable< OutputPixelType >) OutputOStreamWritableCheck
virtual void	SetNumberOfHistogramBins (unsigned int _arg)
virtual unsigned int	GetNumberOfHistogramBins () const
virtual void	SetAutoMinimumMaximum (bool _arg)
virtual bool	GetAutoMinimumMaximum () const
virtual void	AutoMinimumMaximumOn ()
virtual void	AutoMinimumMaximumOff ()
virtual void	SetMaskOutput (bool _arg)
virtual bool	GetMaskOutput () const
virtual void	MaskOutputOn ()
virtual void	MaskOutputOff ()
virtual void	SetMaskValue (MaskPixelType _arg)
virtual MaskPixelType	GetMaskValue () const
virtual void	SetCalculator (CalculatorType *_arg)
virtual CalculatorType *	GetCalculator ()
Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput (void) const
const InputImageType *	GetInput (unsigned int idx) const
virtual void	PopBackInput ()
virtual void	PopFrontInput ()
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const TInputImage *image)
Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageType *	GetOutput (void)
const OutputImageType *	GetOutput (void) const
virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx)
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData ()
NameArray	GetInputNames () const
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
virtual const float &	GetProgress ()
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual DataObjectPointer	MakeOutput (const DataObjectIdentifierType &)
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	SetProgress (float _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float amount)
DataObjectPointerArray	GetInputs ()
DataObjectPointerArray	GetOutputs ()
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag ()
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads ()
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Attributes

static const unsigned int	InputImageDimension = InputImageType::ImageDimension
static const unsigned int	OutputImageDimension = OutputImageType::ImageDimension
Static Public Attributes inherited from itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >
static const unsigned int	MaskImageDimension = MaskImageType::ImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
Static Public Attributes inherited from itk::ImageSource< TOutputImage >

Protected Member Functions
	RenyiEntropyThresholdImageFilter ()
	~RenyiEntropyThresholdImageFilter ()
Protected Member Functions inherited from itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >
void	GenerateData ()
void	GenerateInputRequestedRegion ()
	HistogramThresholdImageFilter ()
	~HistogramThresholdImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
	ImageToImageFilter ()
virtual void	VerifyInputInformation ()
	~ImageToImageFilter ()
void	PushBackInput (const DataObject *input)
void	PushFrontInput (const DataObject *input)
Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
virtual void	BeforeThreadedGenerateData ()
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual	~ImageSource ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs ()
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs ()
bool	IsIndexedName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromName (const DataObjectIdentifierType &) const
DataObjectIdentifierType	MakeNameFromIndex (DataObjectPointerArraySizeType) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
DataObject *	GetInput (DataObjectPointerArraySizeType)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Member Functions
void	operator= (const Self &)
	RenyiEntropyThresholdImageFilter (const Self &)

Additional Inherited Members
Protected Attributes inherited from itk::HistogramThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >
bool	m_AutoMinimumMaximum
CalculatorPointer	m_Calculator
OutputPixelType	m_InsideValue
bool	m_MaskOutput
MaskPixelType	m_MaskValue
unsigned	m_NumberOfHistogramBins
OutputPixelType	m_OutsideValue
InputPixelType	m_Threshold

Detailed Description

template<class TInputImage, class TOutputImage, class TMaskImage = TOutputImage>
class itk::RenyiEntropyThresholdImageFilter< TInputImage, TOutputImage, TMaskImage >

Threshold an image using the RenyiEntropy Threshold.

This filter creates a binary thresholded image that separates an image into foreground and background components. The filter computes the threshold using the RenyiEntropyThresholdCalculator and applies that theshold to the input image using the BinaryThresholdImageFilter.

Author:: Richard Beare. Department of Medicine, Monash University, Melbourne, Australia.; Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: http://hdl.handle.net/10380/3279 or http://www.insight-journal.org/browse/publication/811

See also:: HistogramThresholdImageFitler

Definition at line 51 of file itkRenyiEntropyThresholdImageFilter.h.