template<class TFixedImage, class TMovingImage, class TDisplacementField>
class itk::DiffeomorphicDemonsRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
Deformably register two images using a diffeomorphic demons algorithm.
This class was contributed by Tom Vercauteren, INRIA & Mauna Kea Technologies, based on a variation of the DemonsRegistrationFilter. The basic modification is to use diffeomorphism exponentials.
See T. Vercauteren, X. Pennec, A. Perchant and N. Ayache, "Non-parametric Diffeomorphic Image Registration with the Demons Algorithm", Proc. of MICCAI 2007.
DiffeomorphicDemonsRegistrationFilter implements the demons deformable algorithm that register two images by computing the deformation field which will map a moving image onto a fixed image.
A deformation field is represented as a image whose pixel type is some vector type with at least N elements, where N is the dimension of the fixed image. The vector type must support element access via operator []. It is assumed that the vector elements behave like floating point scalars.
This class is templated over the fixed image type, moving image type and the deformation field type.
The input fixed and moving images are set via methods SetFixedImage and SetMovingImage respectively. An initial deformation field maybe set via SetInitialDisplacementField or SetInput. If no initial field is set, a zero field is used as the initial condition.
The output deformation field can be obtained via methods GetOutput or GetDisplacementField.
This class make use of the finite difference solver hierarchy. Update for each iteration is computed in DemonsRegistrationFunction.
- Author
- Tom Vercauteren, INRIA & Mauna Kea Technologies
- Warning
- This filter assumes that the fixed image type, moving image type and deformation field type all have the same number of dimensions.
This implementation was taken from the Insight Journal paper: http://hdl.handle.net/1926/510
- See Also
- DemonsRegistrationFilter
-
DemonsRegistrationFunction
Definition at line 78 of file itkDiffeomorphicDemonsRegistrationFilter.h.
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef
ESMDemonsRegistrationFunction
< FixedImageType,
MovingImageType,
DisplacementFieldType > | DemonsRegistrationFunctionType |
|
typedef
Superclass::DisplacementFieldPointer | DisplacementFieldPointer |
|
typedef
Superclass::DisplacementFieldType | DisplacementFieldType |
|
typedef
Superclass::FiniteDifferenceFunctionType | FiniteDifferenceFunctionType |
|
typedef
Superclass::FixedImagePointer | FixedImagePointer |
|
typedef Superclass::FixedImageType | FixedImageType |
|
typedef
DemonsRegistrationFunctionType::GradientType | GradientType |
|
typedef
Superclass::MovingImagePointer | MovingImagePointer |
|
typedef Superclass::MovingImageType | MovingImageType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef
DiffeomorphicDemonsRegistrationFilter | Self |
|
typedef
PDEDeformableRegistrationFilter
< TFixedImage, TMovingImage,
TDisplacementField > | Superclass |
|
typedef
FiniteDifferenceFunctionType::TimeStepType | TimeStepType |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef
DisplacementFieldType::Pointer | DisplacementFieldPointer |
|
typedef TDisplacementField | DisplacementFieldType |
|
typedef
Superclass::FiniteDifferenceFunctionType | FiniteDifferenceFunctionType |
|
typedef
FixedImageType::ConstPointer | FixedImageConstPointer |
|
typedef FixedImageType::Pointer | FixedImagePointer |
|
typedef TFixedImage | FixedImageType |
|
typedef
MovingImageType::ConstPointer | MovingImageConstPointer |
|
typedef MovingImageType::Pointer | MovingImagePointer |
|
typedef TMovingImage | MovingImageType |
|
typedef Superclass::OutputImageType | OutputImageType |
|
typedef
PDEDeformableRegistrationFunction
< FixedImageType,
MovingImageType,
DisplacementFieldType > | PDEDeformableRegistrationFunctionType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef
PDEDeformableRegistrationFilter | Self |
|
typedef FixedArray< double,
ImageDimension > | StandardDeviationsType |
|
typedef
DenseFiniteDifferenceImageFilter
< TDisplacementField,
TDisplacementField > | Superclass |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef
Superclass::FiniteDifferenceFunctionType | FiniteDifferenceFunctionType |
|
typedef Superclass::InputImageType | InputImageType |
|
typedef Superclass::OutputImageType | OutputImageType |
|
typedef Superclass::PixelType | PixelType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef
DenseFiniteDifferenceImageFilter | Self |
|
typedef
FiniteDifferenceImageFilter
< TDisplacementField,
TDisplacementField > | Superclass |
|
typedef Superclass::TimeStepType | TimeStepType |
|
typedef OutputImageType | UpdateBufferType |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef
FiniteDifferenceFunction
< TDisplacementField > | FiniteDifferenceFunctionType |
|
typedef TDisplacementField | InputImageType |
|
typedef
TDisplacementField::PixelType | InputPixelType |
|
typedef NumericTraits
< InputPixelType >::ValueType | InputPixelValueType |
|
typedef
FiniteDifferenceFunctionType::NeighborhoodScalesType | NeighborhoodScalesType |
|
typedef TDisplacementField | OutputImageType |
|
typedef
TDisplacementField::PixelType | OutputPixelType |
|
typedef NumericTraits
< OutputPixelType >::ValueType | OutputPixelValueType |
|
typedef OutputPixelType | PixelType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef
FiniteDifferenceFunctionType::RadiusType | RadiusType |
|
typedef FiniteDifferenceImageFilter | Self |
|
typedef InPlaceImageFilter
< TDisplacementField,
TDisplacementField > | Superclass |
|
typedef
FiniteDifferenceFunctionType::TimeStepType | TimeStepType |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef
InputImageType::ConstPointer | InputImageConstPointer |
|
typedef InputImageType::PixelType | InputImagePixelType |
|
typedef InputImageType::Pointer | InputImagePointer |
|
typedef InputImageType::RegionType | InputImageRegionType |
|
typedef TDisplacementField | InputImageType |
|
typedef
Superclass::OutputImagePixelType | OutputImagePixelType |
|
typedef
Superclass::OutputImagePointer | OutputImagePointer |
|
typedef
Superclass::OutputImageRegionType | OutputImageRegionType |
|
typedef Superclass::OutputImageType | OutputImageType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef InPlaceImageFilter | Self |
|
typedef ImageToImageFilter
< TDisplacementField,
TDisplacementField > | Superclass |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef
InputImageType::ConstPointer | InputImageConstPointer |
|
typedef InputImageType::PixelType | InputImagePixelType |
|
typedef InputImageType::Pointer | InputImagePointer |
|
typedef InputImageType::RegionType | InputImageRegionType |
|
typedef TDisplacementField | InputImageType |
|
typedef
Superclass::OutputImagePixelType | OutputImagePixelType |
|
typedef
Superclass::OutputImageRegionType | OutputImageRegionType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef ImageToImageFilter | Self |
|
typedef ImageSource
< TDisplacementField > | Superclass |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef
Superclass::DataObjectIdentifierType | DataObjectIdentifierType |
|
typedef DataObject::Pointer | DataObjectPointer |
|
typedef
Superclass::DataObjectPointerArraySizeType | DataObjectPointerArraySizeType |
|
typedef OutputImageType::PixelType | OutputImagePixelType |
|
typedef OutputImageType::Pointer | OutputImagePointer |
|
typedef OutputImageType::RegionType | OutputImageRegionType |
|
typedef TDisplacementField | OutputImageType |
|
typedef SmartPointer< Self > | Pointer |
|
typedef ImageSource | Self |
|
typedef ProcessObject | Superclass |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef
DataObject::DataObjectIdentifierType | DataObjectIdentifierType |
|
typedef DataObject::Pointer | DataObjectPointer |
|
typedef std::vector
< DataObjectPointer > | DataObjectPointerArray |
|
typedef
DataObjectPointerArray::size_type | DataObjectPointerArraySizeType |
|
typedef std::vector
< DataObjectIdentifierType > | NameArray |
|
typedef SmartPointer< Self > | Pointer |
|
typedef ProcessObject | Self |
|
typedef Object | Superclass |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef SmartPointer< Self > | Pointer |
|
typedef Object | Self |
|
typedef LightObject | Superclass |
|
typedef SmartPointer< const Self > | ConstPointer |
|
typedef SmartPointer< Self > | Pointer |
|
typedef LightObject | Self |
|
|
virtual void | AllocateUpdateBuffer () |
|
virtual void | ApplyUpdate (const TimeStepType &dt) |
|
| DiffeomorphicDemonsRegistrationFilter () |
|
virtual void | InitializeIteration () |
|
void | PrintSelf (std::ostream &os, Indent indent) const |
|
| ~DiffeomorphicDemonsRegistrationFilter () |
|
virtual void | CopyInputToOutput () |
|
virtual void | GenerateInputRequestedRegion () |
|
virtual void | GenerateOutputInformation () |
|
virtual bool | Halt () |
|
virtual void | Initialize () |
|
| PDEDeformableRegistrationFilter () |
|
virtual void | PostProcessOutput () |
|
virtual void | SmoothDisplacementField () |
|
virtual void | SmoothUpdateField () |
|
| ~PDEDeformableRegistrationFilter () |
|
virtual void | ApplyUpdate (const TimeStepType &dt) |
|
virtual TimeStepType | CalculateChange () |
|
| DenseFiniteDifferenceImageFilter () |
|
virtual UpdateBufferType * | GetUpdateBuffer () |
|
void | PrintSelf (std::ostream &os, Indent indent) const |
|
virtual void | ThreadedApplyUpdate (const TimeStepType &dt, const ThreadRegionType ®ionToProcess, ThreadIdType threadId) |
|
virtual TimeStepType | ThreadedCalculateChange (const ThreadRegionType ®ionToProcess, ThreadIdType threadId) |
|
| ~DenseFiniteDifferenceImageFilter () |
|
virtual void | ApplyUpdate (const TimeStepType &dt)=0 |
|
| FiniteDifferenceImageFilter () |
|
virtual void | GenerateData () |
|
void | PrintSelf (std::ostream &os, Indent indent) const |
|
virtual TimeStepType | ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const |
|
virtual void | SetElapsedIterations (IdentifierType _arg) |
|
virtual bool | ThreadedHalt (void *) |
|
virtual | ~FiniteDifferenceImageFilter () |
|
virtual void | AllocateOutputs () |
|
virtual bool | GetRunningInPlace () const |
|
| InPlaceImageFilter () |
|
virtual void | ReleaseInputs () |
|
| ~InPlaceImageFilter () |
|
virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
|
virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
|
virtual void | VerifyInputInformation () |
|
void | PushBackInput (const DataObject *input) |
|
void | PushFrontInput (const DataObject *input) |
|
| ImageToImageFilter () |
|
| ~ImageToImageFilter () |
|
virtual void | AfterThreadedGenerateData () |
|
virtual void | BeforeThreadedGenerateData () |
|
| ImageSource () |
|
virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int num, OutputImageRegionType &splitRegion) |
|
virtual void | ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) |
|
virtual | ~ImageSource () |
|
virtual void | AddInput (DataObject *input) |
|
virtual void | AddOutput (DataObject *output) |
|
bool | AddRequiredInputName (const DataObjectIdentifierType &) |
|
virtual void | CacheInputReleaseDataFlags () |
|
virtual void | GenerateOutputRequestedRegion (DataObject *output) |
|
virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () |
|
bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
|
bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
|
bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
|
| itkLegacyMacro (virtual void RemoveInput(DataObject *input)) |
|
| itkLegacyMacro (virtual void RemoveOutput(DataObject *output)) |
|
| itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num)) |
|
| itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num)) |
|
DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
|
DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
|
DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
|
DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
|
| ProcessObject () |
|
virtual void | PropagateResetPipeline () |
|
virtual void | RemoveInput (const DataObjectIdentifierType &key) |
|
virtual void | RemoveInput (DataObjectPointerArraySizeType) |
|
virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
|
virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
|
bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
|
virtual void | RestoreInputReleaseDataFlags () |
|
virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
|
virtual void | SetNthInput (DataObjectPointerArraySizeType num, DataObject *input) |
|
virtual void | SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output) |
|
void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
|
void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
|
virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
|
virtual void | SetOutput (const DataObjectIdentifierType &key, DataObject *output) |
|
virtual void | SetPrimaryInput (DataObject *input) |
|
virtual void | SetPrimaryOutput (DataObject *output) |
|
void | SetRequiredInputNames (const NameArray &) |
|
virtual void | VerifyPreconditions () |
|
| ~ProcessObject () |
|
DataObject * | GetInput (const DataObjectIdentifierType &key) |
|
const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
|
DataObject * | GetInput (DataObjectPointerArraySizeType) |
|
const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
|
DataObject * | GetPrimaryInput () |
|
const DataObject * | GetPrimaryInput () const |
|
virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
|
virtual const char * | GetPrimaryInputName () const |
|
DataObject * | GetOutput (const DataObjectIdentifierType &key) |
|
const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
|
virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
|
virtual const char * | GetPrimaryOutputName () const |
|
DataObject * | GetOutput (DataObjectPointerArraySizeType idx) |
|
const DataObject * | GetOutput (DataObjectPointerArraySizeType idx) const |
|
DataObject * | GetPrimaryOutput () |
|
const DataObject * | GetPrimaryOutput () const |
|
virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
|
virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () |
|
| Object () |
|
bool | PrintObservers (std::ostream &os, Indent indent) const |
|
virtual void | SetTimeStamp (const TimeStamp &time) |
|
virtual | ~Object () |
|
virtual LightObject::Pointer | InternalClone () const |
|
| LightObject () |
|
virtual void | PrintHeader (std::ostream &os, Indent indent) const |
|
virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
|
virtual | ~LightObject () |
|