User contributions for Christopher.mullins

7 January 2015

• 19:3919:39, 7 January 2015 diff hist +2,058‎ N TubeTK/Documentation/TransformTubes ‎ Created page with " Description: Applies a transform or displacement field to tubes (i.e., spatial objects). USAGE: ./TransformTubes [--returnparameterfile <std::string>]..." current
• 19:3819:38, 7 January 2015 diff hist +1,014‎ N TubeTK/Documentation/TextCompareCommand ‎ Created page with "Usage : ./TextCompareCommand System tags: [ -v ] or [ -h ] = List options in short format [ -V ] or [ -H ] = List options in long format [ -vxml ] or [..." current
• 19:3819:38, 7 January 2015 diff hist +1,350‎ N TubeTK/Documentation/SubSampleTubes ‎ Created page with " Description: Sub-samples the points comprising a tube tree. USAGE: ./SubSampleTubes [--returnparameterfile <std::string>] [--processinformationa..." current
• 19:3719:37, 7 January 2015 diff hist +3,673‎ N TubeTK/Documentation/SimulateAcquisitionArtifactsUsingPrior ‎ Created page with " Description: Given an image and a mask, process the mask to match the image. USAGE: ./SimulateAcquisitionArtifactsUsingPrior [--returnparameterfile..." current
• 19:3719:37, 7 January 2015 diff hist +1,894‎ N TubeTK/Documentation/ShrinkImage ‎ Created page with " Description: Project an image into fewer slices. Integration uses the 'max' function. USAGE: ./ShrinkImage [--returnparameterfile <std::string>]..." current
• 19:3619:36, 7 January 2015 diff hist +1,423‎ N TubeTK/Documentation/SegmentUsingOtsuThreshold ‎ Created page with " Description: Run Otsu thresholding to automatically split the intensities in an image. USAGE: ./SegmentUsingOtsuThreshold [--returnparameterfile <std::string>]..." current
• 19:3619:36, 7 January 2015 diff hist +2,658‎ N TubeTK/Documentation/SegmentTubes ‎ Created page with " Description: Extracts a 1D scaled ridge and estimate its radius in an ND image. USAGE: ./SegmentTubes [--returnparameterfile <std::string>] [--..." current
• 18:5818:58, 7 January 2015 diff hist +4,926‎ N TubeTK/Documentation/SegmentConnectedComponentsUsingParzenPDFs ‎ Created page with " Description: Given multiple, registered images and foreground and background masks, computes multivariate PDFs for inside and outside classes, and then performs compe..." current
• 18:5818:58, 7 January 2015 diff hist +1,672‎ N TubeTK/Documentation/SegmentConnectedComponents ‎ Created page with " Description: Label each connected region in a binary image with a unique value. USAGE: ./SegmentConnectedComponents [--returnparameterfile <std::string>]..." current
• 18:5718:57, 7 January 2015 diff hist +1,428‎ N TubeTK/Documentation/SegmentBinaryImageSkeleton ‎ Created page with " Description: Generate a skeleton from a binary mask. USAGE: ./SegmentBinaryImageSkeleton [--returnparameterfile <std::string>] [--pr..." current
• 18:5718:57, 7 January 2015 diff hist +1,454‎ N TubeTK/Documentation/SampleCLIApplication ‎ Created page with " Description: Demonstration of how to write a CLI application. Performs blurring. USAGE: ./SampleCLIApplication [--returnparameterfile <std::string>]..." current
• 18:5618:56, 7 January 2015 diff hist +2,587‎ N TubeTK/Documentation/ResampleImage ‎ Created page with " Description: Resamples an image to match another image (origin, orientation, and spacing), to be isotropic, or to have a specific spacing. USAGE: ./ResampleImag..." current
• 18:5518:55, 7 January 2015 diff hist +11,325‎ N TubeTK/Documentation/RegisterUsingSlidingGeometries ‎ Created page with " Description: Performs registration between images depicting sliding organs, using an anisotropic diffusive regularization. USAGE: ./RegisterUsingSlidingGeometries..." current
• 18:5518:55, 7 January 2015 diff hist +1,823‎ N TubeTK/Documentation/RegisterUsingImageCenters ‎ Created page with " Description: Center phantom data (e.g., image, label map) with respect to the center of a reference image's space. USAGE: ./RegisterUsingImageCenters [--returnpar..." current
• 18:5218:52, 7 January 2015 diff hist +6,045‎ N TubeTK/Documentation/RegisterImages ‎ Created page with " Description: Provides rigid, affine, and BSpline registration methods via a simple GUI USAGE: ./RegisterImages [--returnparameterfile <std::string>]..." current
• 18:5218:52, 7 January 2015 diff hist +1,415‎ N TubeTK/Documentation/MergeTubeGraphs ‎ Created page with " Description: Map multiple graphs into just one graph. USAGE: ./MergeTubeGraphs [--returnparameterfile <std::string>] [--processinformationaddre..." current
• 18:5118:51, 7 January 2015 diff hist +2,762‎ N TubeTK/Documentation/MergeAdjacentImages ‎ Created page with " Description: Merge the second image into the space of the first. USAGE: ./MergeAdjacentImages [--returnparameterfile <std::string>] [--p..." current
• 18:5118:51, 7 January 2015 diff hist +916‎ N TubeTK/Documentation/JsonCompareCommand ‎ Created page with "Usage : ./JsonCompareCommand System tags: [ -v ] or [ -h ] = List options in short format [ -V ] or [ -H ] = List options in long format [ -vxml ] or [..." current
• 18:5018:50, 7 January 2015 diff hist +2,123‎ N TubeTK/Documentation/ImageCompareCommand ‎ Created page with " Description: Short description. USAGE: ./ImageCompareCommand [--returnparameterfile <std::string>] [--processinformationaddress <std::strin..." current
• 18:4918:49, 7 January 2015 diff hist +3,935‎ N TubeTK/Documentation/EnhanceUsingNJetDiscriminantAnalysis ‎ Created page with " Description: Given an image and foreground and background masks, computes multiscale Jet (0, 1, and 2 order) features at each pixel, performs a multivariate LDA or PC..." current
• 18:4818:48, 7 January 2015 diff hist +2,562‎ N TubeTK/Documentation/EnhanceUsingDiscriminantAnalysis ‎ Created page with " Description: Given multiple, registered images and foreground and background masks, computes a LDA (nClasses-1) + PCA space for separating the classes, and generates..." current
• 18:4818:48, 7 January 2015 diff hist +3,412‎ N TubeTK/Documentation/EnhanceTubesUsingDiscriminantAnalysis ‎ Created page with " Description: Given an image and foreground and background masks, computes multiscale Jet (0, 1, and 2 order) features at each pixel, performs a multivariate LDA or PC..." current
• 18:4718:47, 7 January 2015 diff hist +2,578‎ N TubeTK/Documentation/EnhanceTubesUsingDiffusion ‎ Created page with " Description: Compute vesselness score of an image using Frangi's method. USAGE: ./EnhanceTubesUsingDiffusion [--returnparameterfile <std::string>]..." current
• 18:4718:47, 7 January 2015 diff hist +2,533‎ N TubeTK/Documentation/EnhanceEdgesUsingDiffusion ‎ Created page with " Description: Performs edge enhancing anisotropic diffusion: smooths strongly in the direction parallel to an edge, while smoothing normal to the edge is inversely pro..." current
• 18:4618:46, 7 January 2015 diff hist +2,154‎ N TubeTK/Documentation/EnhanceContrastUsingPrior ‎ Created page with " Description: Given an image and a mask, process the image to maximize the SNR between the classes indicated by the mask. USAGE: ./EnhanceContrastUsingPrior [--ret..." current
• 18:4518:45, 7 January 2015 diff hist +2,933‎ N TubeTK/Documentation/EnhanceCoherenceUsingDiffusion ‎ Created page with " Description: Performs coherence enhancing anisotropic diffusion: smooths flow-like structures (ex. vessels/tubes). Strong smoothing is performed in the direction of l..." current
• 18:4518:45, 7 January 2015 diff hist +3,967‎ N TubeTK/Documentation/EnhanceCoherenceAndEdgesUsingDiffusion ‎ Created page with " Description: Continuous switch between edge enhancing anisotropic diffusion (for homogeneous regions and plate-like structures) and coherence enhancing anisotropic di..." current
• 18:4418:44, 7 January 2015 diff hist +2,744‎ N TubeTK/Documentation/DeblendTomosynthesisSlicesUsingPrior ‎ Created page with " Description: Deblends images. USAGE: ./DeblendTomosynthesisSlicesUsingPrior [--returnparameterfile <std::string>]..." current
• 18:4318:43, 7 January 2015 diff hist +1,499‎ N TubeTK/Documentation/ConvertTubeToTubeGraph ‎ Created page with " Description: Maps tubes into a graph structure using an central Voronoi tessellation. USAGE: ./ConvertTubeToTubeGraph [--returnparameterfile <std::string>]..." current
• 18:4318:43, 7 January 2015 diff hist +1,422‎ N TubeTK/Documentation/ConvertTubesToSurface ‎ Created page with " Description: Renders ITK tube SpatialObject data structures into polygons representing the wall of the tubes. The .vtk and .stl file formats are supported. USAGE:..." current
• 18:4218:42, 7 January 2015 diff hist +1,511‎ N TubeTK/Documentation/ConvertTubesToImage ‎ Created page with " Description: Computes a binary image from tubes USAGE: ./ConvertTubesToImage [--returnparameterfile <std::string>] [--processinformationadd..." current
• 18:4118:41, 7 January 2015 diff hist +2,221‎ N TubeTK/Documentation/ConvertTubesToDensityImage ‎ Created page with " Description: Computes an Euclidean distance map from tubes. USAGE: ./ConvertTubesToDensityImage [--returnparameterfile <std::string>]..." current
• 18:4118:41, 7 January 2015 diff hist +1,462‎ N TubeTK/Documentation/ConvertTubeGraphToImage ‎ Created page with " Description: Computes an image from a graph representation and the CVT centroids. USAGE: ./ConvertTubeGraphToImage [--returnparameterfile <std::string>]..." current
• 18:4018:40, 7 January 2015 diff hist +1,470‎ N TubeTK/Documentation/ConvertTRE ‎ Created page with " Description: Convert a TubeX file from to a TubeTK file. USAGE: ./ConvertTRE [--returnparameterfile <std::string>] [--processinformationaddress <std..." current
• 18:3918:39, 7 January 2015 diff hist −142‎ TubeTK/Documentation ‎ →‎Applications
• 18:3818:38, 7 January 2015 diff hist +2,840‎ TubeTK/Documentation ‎ →‎Applications
• 18:3218:32, 7 January 2015 diff hist +1,764‎ N TubeTK/Documentation/ConvertShrunkenSeedImageToList ‎ Created page with " Description: Given a shrunken mask image and the original pixel coordinate image, generate a list of non-zero pixels. USAGE: ./ConvertShrunkenSeedImageToList [--..." current
• 18:3118:31, 7 January 2015 diff hist +92‎ TubeTK/Documentation ‎ →‎Applications
• 18:3118:31, 7 January 2015 diff hist +2,527‎ N TubeTK/Documentation/ConvertInnerOpticToPlus ‎ Created page with " Description: Convert a sequence of ultrasound screen capture images and tracker data in InnerOptic's format to the format used by the Plus ultrasound library. The Pl..." current
• 18:3018:30, 7 January 2015 diff hist +78‎ TubeTK/Documentation ‎ →‎Applications
• 17:0417:04, 7 January 2015 diff hist +1,503‎ N TubeTK/Documentation/ComputeTubeProbability ‎ Created page with "Description: Takes all points of the input tubes, maps them into the space of the mean Euclidean distance image, and outputs the distance values at those points. USAGE:..." current
• 17:0317:03, 7 January 2015 diff hist +76‎ TubeTK/Documentation ‎ →‎Applications
• 17:0217:02, 7 January 2015 diff hist +1,603‎ N TubeTK/Documentation/ComputeTubeMeasures ‎ Created page with "Description: Returns the ridgeness, roundness, curvature, and levelness measures. USAGE: ./ComputeTubeMeasures [--returnparameterfile <std::string>]..." current
• 17:0217:02, 7 January 2015 diff hist +70‎ TubeTK/Documentation ‎ →‎Applications
• 17:0117:01, 7 January 2015 diff hist +1,585‎ N TubeTK/Documentation/ComputeTubeGraphProbability ‎ Created page with "Description: Propagates averaged information of a (mean) graph to the current graph based on connectivity information. USAGE: ./ComputeTubeGraphProbability [--returnpar..." current
• 17:0117:01, 7 January 2015 diff hist +86‎ TubeTK/Documentation ‎ →‎Applications
• 17:0017:00, 7 January 2015 diff hist +1,864‎ N TubeTK/Documentation/ComputeSegmentTubesParameters ‎ Created page with "Description: Demonstration of how to write a CLI application. Performs blurring. USAGE: ./ComputeSegmentTubesParameters [--returnparameterfile <std::string>]..." current
• 16:5916:59, 7 January 2015 diff hist +90‎ TubeTK/Documentation ‎ →‎Applications
• 16:5916:59, 7 January 2015 diff hist +1,447‎ N TubeTK/Documentation/ComputeImageStatisticsUsingMask ‎ Created page with "Description: Compute image statistics for each region indicated in a mask file. USAGE: ./ComputeImageStatisticsUsingMask [--returnparameterfile <std::string>]..." current
• 16:5816:58, 7 January 2015 diff hist +94‎ TubeTK/Documentation ‎ →‎Applications