ITK  5.2.0
Insight Toolkit
Public Types | Public Member Functions | Static Public Member Functions | List of all members

#include <itkDeformableSimplexMesh3DFilter.h>

+ Inheritance diagram for itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >:
+ Collaboration diagram for itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >:

Public Types

using BinaryOutput = Image< unsigned char, 3 >
 
using CellsContainerIterator = typename InputMeshType::CellsContainer::Iterator
 
using CellsContainerPointer = typename InputMeshType::CellsContainerPointer
 
using ConstPointer = SmartPointer< const Self >
 
using CovariantVectorType = CovariantVector< typename VectorType::ValueType, 3 >
 
using GeometryMapIterator = typename GeometryMapType::Iterator
 
using GeometryMapPointer = typename GeometryMapType::Pointer
 
using GeometryMapType = typename InputMeshType::GeometryMapType
 
using GradientImagePointer = typename GradientImageType::Pointer
 
using GradientImageSizeType = typename GradientImageType::SizeType
 
using GradientImageType = Image< GradientType, 3 >
 
using GradientIndexType = typename GradientImageType::IndexType
 
using GradientIndexValueType = typename GradientIndexType::IndexValueType
 
using GradientPixelType = typename GradientImageType::PixelType
 
using GradientType = CovariantVector< PixelType, 3 >
 
using IndexSetIterator = typename IndexSetType::iterator
 
using IndexSetType = std::set< IdentifierType >
 
using InputMeshPointer = typename InputMeshType::Pointer
 
using InputMeshType = TInputMesh
 
using InputNeighbors = typename InputMeshType::NeighborListType
 
using InputNeighborsIterator = typename InputMeshType::NeighborListType::iterator
 
using InputPointsContainer = typename InputMeshType::PointsContainer
 
using InputPointsContainerConstIterator = typename InputMeshType::PointsContainer::ConstIterator
 
using InputPointsContainerPointer = typename InputMeshType::PointsContainerPointer
 
using MagnitudeOutput = Image< float, 3 >
 
using MeshPointType = typename InputMeshType::PointType
 
using NeighborSetIterator = typename NeighborSetType::iterator
 
using NeighborSetType = std::set< IdentifierType >
 
using OutputMeshPointer = typename OutputMeshType::Pointer
 
using OutputMeshType = TOutputMesh
 
using PixelType = typename InputMeshType::PixelType
 
using Pointer = SmartPointer< Self >
 
using PointType = typename SimplexMeshGeometry::PointType
 
using Self = DeformableSimplexMesh3DFilter
 
using Superclass = MeshToMeshFilter< TInputMesh, TOutputMesh >
 
using VectorType = typename PointType::VectorType
 
using VertexNeighborListType = itk::MapContainer< IdentifierType, NeighborSetType >
 
- Public Types inherited from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >
using ConstPointer = SmartPointer< const Self >
 
using InputMeshPointer = typename InputMeshType::Pointer
 
using InputMeshType = TInputMesh
 
using OutputMeshPointer = typename OutputMeshType::Pointer
 
using OutputMeshType = TOutputMesh
 
using Pointer = SmartPointer< Self >
 
using Self = MeshToMeshFilter
 
using Superclass = MeshSource< TOutputMesh >
 
- Public Types inherited from itk::MeshSource< TOutputMesh >
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = Superclass::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using OutputMeshPointer = typename OutputMeshType::Pointer
 
using OutputMeshType = TOutputMesh
 
using Pointer = SmartPointer< Self >
 
using Self = MeshSource
 
using Superclass = ProcessObject
 
using DataObjectPointerArraySizeType = ProcessObject::DataObjectPointerArraySizeType
 
- Public Types inherited from itk::ProcessObject
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = DataObject::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArray = std::vector< DataObjectPointer >
 
using DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
 
using MultiThreaderType = MultiThreaderBase
 
using NameArray = std::vector< DataObjectIdentifierType >
 
using Pointer = SmartPointer< Self >
 
using Self = ProcessObject
 
using Superclass = Object
 
- Public Types inherited from itk::Object
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = Object
 
using Superclass = LightObject
 
- Public Types inherited from itk::LightObject
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = LightObject
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
const GradientImageTypeGetGradient () const
 
virtual const char * GetNameOfClass () const
 
void SetGradient (const GradientImageType *gradientImage)
 
- Public Member Functions inherited from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >
const InputMeshTypeGetInput () const
 
const InputMeshTypeGetInput (unsigned int idx) const
 
void SetInput (const InputMeshType *input)
 
- Public Member Functions inherited from itk::MeshSource< TOutputMesh >
OutputMeshTypeGetOutput ()
 
OutputMeshTypeGetOutput (unsigned int idx)
 
void SetOutput (TOutputMesh *output)
 
virtual void GraftOutput (DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
DataObjectPointer MakeOutput (DataObjectPointerArraySizeType idx) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual DataObjectPointerArraySizeType GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual float GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
void IncrementProgress (float increment)
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfWorkUnits (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfWorkUnits () const
 
MultiThreaderTypeGetMultiThreader () const
 
void SetMultiThreader (MultiThreaderType *threader)
 
virtual void PrepareOutputs ()
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetReferenceCount (int) override
 
void UnRegister () const noexcept override
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMetaDataDictionary (MetaDataDictionary &&rrhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::MeshSource< TOutputMesh >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 
double m_Alpha
 
double m_Beta
 
double m_Gamma
 
double m_Damping
 
unsigned int m_Rigidity
 
int m_Step
 
int m_ImageWidth
 
int m_ImageHeight
 
int m_ImageDepth
 
int m_Iterations
 
GeometryMapPointer m_Data
 
virtual void SetIterations (int _arg)
 
virtual int GetIterations () const
 
virtual void SetAlpha (double _arg)
 
virtual double GetAlpha () const
 
virtual void SetBeta (double _arg)
 
virtual double GetBeta () const
 
virtual void SetGamma (double _arg)
 
virtual double GetGamma () const
 
virtual void SetDamping (double _arg)
 
virtual double GetDamping () const
 
virtual void SetRigidity (unsigned int _arg)
 
virtual unsigned int GetRigidity () const
 
virtual void SetData (GeometryMapType *_arg)
 
virtual GeometryMapTypeGetModifiableData ()
 
virtual const GeometryMapTypeGetData () const
 
virtual int GetImageWidth () const
 
virtual int GetImageHeight () const
 
virtual int GetImageDepth () const
 
virtual int GetStep () const
 
 DeformableSimplexMesh3DFilter ()
 
 ~DeformableSimplexMesh3DFilter () override=default
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
void GenerateData () override
 
virtual void Initialize ()
 
virtual void ComputeGeometry ()
 
virtual void ComputeDisplacement ()
 
virtual void ComputeInternalForce (SimplexMeshGeometry *data)
 
virtual void ComputeExternalForce (SimplexMeshGeometry *data, const GradientImageType *gradient)
 
virtual void ComputeOutput ()
 
virtual void UpdateReferenceMetrics ()
 
bool L_Func (const double r, const double d, const double phi, double &output)
 
PointType ComputeBarycentricCoordinates (PointType p, SimplexMeshGeometry *data)
 

Additional Inherited Members

- Protected Member Functions inherited from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >
void CopyInputMeshToOutputMeshCellData ()
 
void CopyInputMeshToOutputMeshCellLinks ()
 
void CopyInputMeshToOutputMeshCells ()
 
void CopyInputMeshToOutputMeshPointData ()
 
void CopyInputMeshToOutputMeshPoints ()
 
 MeshToMeshFilter ()
 
 ~MeshToMeshFilter () override=default
 
- Protected Member Functions inherited from itk::MeshSource< TOutputMesh >
 MeshSource ()
 
 ~MeshSource () override=default
 
void GenerateInputRequestedRegion () override
 
- Protected Member Functions inherited from itk::ProcessObject
 ProcessObject ()
 
 ~ProcessObject () override
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void AddInput (DataObject *input)
 
virtual void PushBackInput (const DataObject *input)
 
virtual void PopBackInput ()
 
virtual void PushFrontInput (const DataObject *input)
 
virtual void PopFrontInput ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
virtual void SetPrimaryInput (DataObject *input)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual const DataObjectPointerArraySizeTypeGetNumberOfRequiredInputs () const
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
void SetRequiredInputNames (const NameArray &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
virtual void SetPrimaryOutput (DataObject *output)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
virtual void AddOutput (DataObject *output)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual const DataObjectPointerArraySizeTypeGetNumberOfRequiredOutputs () const
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
virtual void VerifyPreconditions () ITKv5_CONST
 
virtual void VerifyInputInformation () ITKv5_CONST
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
virtual void GenerateOutputInformation ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual bool GetThreaderUpdateProgress () const
 
virtual void ThreaderUpdateProgressOn ()
 
virtual void ThreaderUpdateProgressOff ()
 
virtual void SetThreaderUpdateProgress (bool arg)
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
 ~Object () override
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 
- Static Protected Member Functions inherited from itk::ProcessObject
static constexpr float progressFixedToFloat (uint32_t fixed)
 
static uint32_t progressFloatToFixed (float f)
 
- Protected Attributes inherited from itk::ProcessObject
bool m_Updating
 
TimeStamp m_OutputInformationMTime
 
- Protected Attributes inherited from itk::LightObject
std::atomic< int > m_ReferenceCount
 

Detailed Description

template<typename TInputMesh, typename TOutputMesh>
class itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >

Three-dimensional deformable model for image segmentation.

DeformableSimplexMesh3DFilter is a discrete three-dimensional deformable model, which can be used to deform a 3-D SimplexMesh.

The mesh deformation is constrained by internal forces. The internal force can be scaled via SetAlpha (typical values are 0.01 < alpha < 0.3). The external force is derived from the image one wants to delineate. Therefore an image of type GradientImageType needs to be set by calling SetGradientImage(...). The external forces are scaled via SetBeta (typical values are 0.01 < beta < 1). One still needs to play around with these values.

To control the smoothness of the mesh a rigidity parameter can be adjusted. Low values (1 or 0) allow areas with high curvature. Higher values (around 7 or 8) will make the mesh smoother.

By setting the gamma parameter the regularity of the mesh is controlled. Low values (< 0.03) produce more regular mesh. Higher values ( 0.3 < gamma < 0.2) will allow to move the vertices to regions of higher curvature.

This approach for segmentation follows that of Delingette et al. (1997).

This filter currently assumes that the spacing of the input image is 1.

The user has to set the number of iterations for mesh evolution.

Author
Thomas Boettger. Division Medical and Biological Informatics, German Cancer Research Center, Heidelberg.

Definition at line 77 of file itkDeformableSimplexMesh3DFilter.h.

Member Typedef Documentation

◆ BinaryOutput

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::BinaryOutput = Image<unsigned char, 3>

Definition at line 115 of file itkDeformableSimplexMesh3DFilter.h.

◆ CellsContainerIterator

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::CellsContainerIterator = typename InputMeshType::CellsContainer::Iterator

Definition at line 130 of file itkDeformableSimplexMesh3DFilter.h.

◆ CellsContainerPointer

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::CellsContainerPointer = typename InputMeshType::CellsContainerPointer

Definition at line 129 of file itkDeformableSimplexMesh3DFilter.h.

◆ ConstPointer

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ConstPointer = SmartPointer<const Self>

Definition at line 90 of file itkDeformableSimplexMesh3DFilter.h.

◆ CovariantVectorType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::CovariantVectorType = CovariantVector<typename VectorType::ValueType, 3>

Definition at line 109 of file itkDeformableSimplexMesh3DFilter.h.

◆ GeometryMapIterator

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GeometryMapIterator = typename GeometryMapType::Iterator

Definition at line 142 of file itkDeformableSimplexMesh3DFilter.h.

◆ GeometryMapPointer

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GeometryMapPointer = typename GeometryMapType::Pointer

Definition at line 141 of file itkDeformableSimplexMesh3DFilter.h.

◆ GeometryMapType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GeometryMapType = typename InputMeshType::GeometryMapType

Definition at line 140 of file itkDeformableSimplexMesh3DFilter.h.

◆ GradientImagePointer

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientImagePointer = typename GradientImageType::Pointer

Definition at line 118 of file itkDeformableSimplexMesh3DFilter.h.

◆ GradientImageSizeType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientImageSizeType = typename GradientImageType::SizeType

Definition at line 122 of file itkDeformableSimplexMesh3DFilter.h.

◆ GradientImageType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientImageType = Image<GradientType, 3>

Definition at line 114 of file itkDeformableSimplexMesh3DFilter.h.

◆ GradientIndexType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientIndexType = typename GradientImageType::IndexType

Definition at line 119 of file itkDeformableSimplexMesh3DFilter.h.

◆ GradientIndexValueType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientIndexValueType = typename GradientIndexType::IndexValueType

Definition at line 121 of file itkDeformableSimplexMesh3DFilter.h.

◆ GradientPixelType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientPixelType = typename GradientImageType::PixelType

Definition at line 120 of file itkDeformableSimplexMesh3DFilter.h.

◆ GradientType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GradientType = CovariantVector<PixelType, 3>

Image and Image iterator definition.

Definition at line 113 of file itkDeformableSimplexMesh3DFilter.h.

◆ IndexSetIterator

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::IndexSetIterator = typename IndexSetType::iterator

Definition at line 138 of file itkDeformableSimplexMesh3DFilter.h.

◆ IndexSetType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::IndexSetType = std::set<IdentifierType>

Definition at line 135 of file itkDeformableSimplexMesh3DFilter.h.

◆ InputMeshPointer

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputMeshPointer = typename InputMeshType::Pointer

Definition at line 125 of file itkDeformableSimplexMesh3DFilter.h.

◆ InputMeshType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputMeshType = TInputMesh

Some type alias.

Definition at line 99 of file itkDeformableSimplexMesh3DFilter.h.

◆ InputNeighbors

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputNeighbors = typename InputMeshType::NeighborListType

Definition at line 131 of file itkDeformableSimplexMesh3DFilter.h.

◆ InputNeighborsIterator

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputNeighborsIterator = typename InputMeshType::NeighborListType::iterator

Definition at line 132 of file itkDeformableSimplexMesh3DFilter.h.

◆ InputPointsContainer

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputPointsContainer = typename InputMeshType::PointsContainer

Definition at line 103 of file itkDeformableSimplexMesh3DFilter.h.

◆ InputPointsContainerConstIterator

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputPointsContainerConstIterator = typename InputMeshType::PointsContainer::ConstIterator

Definition at line 104 of file itkDeformableSimplexMesh3DFilter.h.

◆ InputPointsContainerPointer

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::InputPointsContainerPointer = typename InputMeshType::PointsContainerPointer

Definition at line 102 of file itkDeformableSimplexMesh3DFilter.h.

◆ MagnitudeOutput

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::MagnitudeOutput = Image<float, 3>

Definition at line 116 of file itkDeformableSimplexMesh3DFilter.h.

◆ MeshPointType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::MeshPointType = typename InputMeshType::PointType

Definition at line 128 of file itkDeformableSimplexMesh3DFilter.h.

◆ NeighborSetIterator

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::NeighborSetIterator = typename NeighborSetType::iterator

Definition at line 137 of file itkDeformableSimplexMesh3DFilter.h.

◆ NeighborSetType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::NeighborSetType = std::set<IdentifierType>

Definition at line 134 of file itkDeformableSimplexMesh3DFilter.h.

◆ OutputMeshPointer

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::OutputMeshPointer = typename OutputMeshType::Pointer

Definition at line 126 of file itkDeformableSimplexMesh3DFilter.h.

◆ OutputMeshType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::OutputMeshType = TOutputMesh

Definition at line 100 of file itkDeformableSimplexMesh3DFilter.h.

◆ PixelType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::PixelType = typename InputMeshType::PixelType

Definition at line 110 of file itkDeformableSimplexMesh3DFilter.h.

◆ Pointer

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::Pointer = SmartPointer<Self>

Smart pointer type alias support

Definition at line 89 of file itkDeformableSimplexMesh3DFilter.h.

◆ PointType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::PointType = typename SimplexMeshGeometry::PointType

Other definitions.

Definition at line 107 of file itkDeformableSimplexMesh3DFilter.h.

◆ Self

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::Self = DeformableSimplexMesh3DFilter

Standard "Self" type alias.

Definition at line 83 of file itkDeformableSimplexMesh3DFilter.h.

◆ Superclass

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::Superclass = MeshToMeshFilter<TInputMesh, TOutputMesh>

Standard "Superclass" type alias.

Definition at line 86 of file itkDeformableSimplexMesh3DFilter.h.

◆ VectorType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::VectorType = typename PointType::VectorType

Definition at line 108 of file itkDeformableSimplexMesh3DFilter.h.

◆ VertexNeighborListType

template<typename TInputMesh , typename TOutputMesh >
using itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::VertexNeighborListType = itk::MapContainer<IdentifierType, NeighborSetType>

Definition at line 136 of file itkDeformableSimplexMesh3DFilter.h.

Constructor & Destructor Documentation

◆ DeformableSimplexMesh3DFilter()

template<typename TInputMesh , typename TOutputMesh >
itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::DeformableSimplexMesh3DFilter ( )
protected

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

◆ ~DeformableSimplexMesh3DFilter()

template<typename TInputMesh , typename TOutputMesh >
itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::~DeformableSimplexMesh3DFilter ( )
overrideprotecteddefault

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

Member Function Documentation

◆ ComputeBarycentricCoordinates()

template<typename TInputMesh , typename TOutputMesh >
PointType itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeBarycentricCoordinates ( PointType  p,
SimplexMeshGeometry data 
)
protected

Method computes the barycentric coordinates of the passed point

◆ ComputeDisplacement()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeDisplacement ( )
protectedvirtual

Computes the displacement of each point. Therefore internal and external forces are computed and multiplied by the constants (alpha and beta) set by the user.

◆ ComputeExternalForce()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeExternalForce ( SimplexMeshGeometry data,
const GradientImageType gradient 
)
protectedvirtual

Compute the external force component Pass in the gradient image, to avoid inner loop calls to GetGradient()

Reimplemented in itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

◆ ComputeGeometry()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeGeometry ( )
protectedvirtual

Compute geometric properties like curvature and normals, which are necessary for the computation of the internal force components for each point of the mesh.

◆ ComputeInternalForce()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeInternalForce ( SimplexMeshGeometry data)
protectedvirtual

Compute the internal force component

◆ ComputeOutput()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::ComputeOutput ( )
protectedvirtual

At the and of the deformation the output mesh is created by creating a new mesh

◆ CreateAnother()

template<typename TInputMesh , typename TOutputMesh >
virtual::itk::LightObject::Pointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::MeshToMeshFilter< TInputMesh, TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

◆ GenerateData()

template<typename TInputMesh , typename TOutputMesh >
void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GenerateData ( )
overrideprotectedvirtual

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

Reimplemented from itk::ProcessObject.

◆ GetAlpha()

template<typename TInputMesh , typename TOutputMesh >
virtual double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetAlpha ( ) const
virtual

Get internal force scaling factor

◆ GetBeta()

template<typename TInputMesh , typename TOutputMesh >
virtual double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetBeta ( ) const
virtual

Get external force scaling factor

◆ GetDamping()

template<typename TInputMesh , typename TOutputMesh >
virtual double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetDamping ( ) const
virtual

Get reference metrics update scaling factor

◆ GetData()

template<typename TInputMesh , typename TOutputMesh >
virtual const GeometryMapType* itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetData ( ) const
virtual

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

◆ GetGamma()

template<typename TInputMesh , typename TOutputMesh >
virtual double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetGamma ( ) const
virtual

Get reference metrics update scaling factor

◆ GetGradient()

template<typename TInputMesh , typename TOutputMesh >
const GradientImageType* itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetGradient ( ) const

Getter for gradient image

◆ GetImageDepth()

template<typename TInputMesh , typename TOutputMesh >
virtual int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetImageDepth ( ) const
virtual

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

◆ GetImageHeight()

template<typename TInputMesh , typename TOutputMesh >
virtual int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetImageHeight ( ) const
virtual

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

◆ GetImageWidth()

template<typename TInputMesh , typename TOutputMesh >
virtual int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetImageWidth ( ) const
virtual

Width, height and depth of image

◆ GetIterations()

template<typename TInputMesh , typename TOutputMesh >
virtual int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetIterations ( ) const
virtual

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

◆ GetModifiableData()

template<typename TInputMesh , typename TOutputMesh >
virtual GeometryMapType* itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetModifiableData ( )
virtual

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

◆ GetNameOfClass()

template<typename TInputMesh , typename TOutputMesh >
virtual const char* itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetNameOfClass ( ) const
virtual

◆ GetRigidity()

template<typename TInputMesh , typename TOutputMesh >
virtual unsigned int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetRigidity ( ) const
virtual

control smoothness of the mesh

◆ GetStep()

template<typename TInputMesh , typename TOutputMesh >
virtual int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::GetStep ( ) const
virtual

current iteration number

◆ Initialize()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::Initialize ( )
protectedvirtual

Initializes the datastructures necessary for mesh deformation with the values from the passed input mesh.

◆ L_Func()

template<typename TInputMesh , typename TOutputMesh >
bool itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::L_Func ( const double  r,
const double  d,
const double  phi,
double &  output 
)
protected

L function implemented following the paper of Delingette

◆ New()

template<typename TInputMesh , typename TOutputMesh >
static Pointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::New ( )
static

Method of creation through the object factory.

◆ PrintSelf()

template<typename TInputMesh , typename TOutputMesh >
void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

Reimplemented from itk::MeshSource< TOutputMesh >.

Reimplemented in itk::DeformableSimplexMesh3DGradientConstraintForceFilter< TInputMesh, TOutputMesh >.

◆ SetAlpha()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetAlpha ( double  _arg)
virtual

Set scalar factor for internal force

◆ SetBeta()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetBeta ( double  _arg)
virtual

Set external force scaling factor

◆ SetDamping()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetDamping ( double  _arg)
virtual

Set reference metrics update scaling factor

◆ SetData()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetData ( GeometryMapType _arg)
virtual

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

◆ SetGamma()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetGamma ( double  _arg)
virtual

Set reference metrics update scaling factor

◆ SetGradient()

template<typename TInputMesh , typename TOutputMesh >
void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetGradient ( const GradientImageType gradientImage)

Routines. Set/Get routines. Setter for gradient image

◆ SetIterations()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetIterations ( int  _arg)
virtual

Set number of iterations for deformation process

◆ SetRigidity()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::SetRigidity ( unsigned int  _arg)
virtual

control smoothness of the mesh

◆ UpdateReferenceMetrics()

template<typename TInputMesh , typename TOutputMesh >
virtual void itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::UpdateReferenceMetrics ( )
protectedvirtual

Method updates the reference metrics for each mesh point

Member Data Documentation

◆ m_Alpha

template<typename TInputMesh , typename TOutputMesh >
double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Alpha
protected

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

Definition at line 288 of file itkDeformableSimplexMesh3DFilter.h.

◆ m_Beta

template<typename TInputMesh , typename TOutputMesh >
double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Beta
protected

Scalar defining the influence of the external force components The choice for this parameter strongly depends on the underlying data. Typical value range from 0.00001 to 0.3

Definition at line 296 of file itkDeformableSimplexMesh3DFilter.h.

◆ m_Damping

template<typename TInputMesh , typename TOutputMesh >
double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Damping
protected

Parameters definitions. Scalar defining the influence of the internal forces Values should lie between 0.001 and 0.3. Higher values increase the stiffness of the mesh

Definition at line 305 of file itkDeformableSimplexMesh3DFilter.h.

◆ m_Data

template<typename TInputMesh , typename TOutputMesh >
GeometryMapPointer itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Data
protected

map stores a Geometry object for every mesh point

Definition at line 334 of file itkDeformableSimplexMesh3DFilter.h.

◆ m_Gamma

template<typename TInputMesh , typename TOutputMesh >
double itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Gamma
protected

Gamma influences the distribution of the mesh points. It should lie between 0.01 and 0.2. Smaller values force the mesh to be more regular. When increasing gamma, mesh points will have higher density in places of high curvature.

Definition at line 304 of file itkDeformableSimplexMesh3DFilter.h.

◆ m_ImageDepth

template<typename TInputMesh , typename TOutputMesh >
int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_ImageDepth
protected

Image size

Definition at line 326 of file itkDeformableSimplexMesh3DFilter.h.

◆ m_ImageHeight

template<typename TInputMesh , typename TOutputMesh >
int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_ImageHeight
protected

Image size

Definition at line 323 of file itkDeformableSimplexMesh3DFilter.h.

◆ m_ImageWidth

template<typename TInputMesh , typename TOutputMesh >
int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_ImageWidth
protected

Image size

Definition at line 320 of file itkDeformableSimplexMesh3DFilter.h.

◆ m_Iterations

template<typename TInputMesh , typename TOutputMesh >
int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Iterations
protected

This threshold decides when to stop the model.

Definition at line 329 of file itkDeformableSimplexMesh3DFilter.h.

◆ m_Rigidity

template<typename TInputMesh , typename TOutputMesh >
unsigned int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Rigidity
protected

This scalar determines the smoothness of the surface model. Values should range from 0 to 10. It determines the radius of the neighborhood during internal force computation using the curvature shape constraint. The higher the rigidity the higher the smoothness.

Definition at line 313 of file itkDeformableSimplexMesh3DFilter.h.

◆ m_Step

template<typename TInputMesh , typename TOutputMesh >
int itk::DeformableSimplexMesh3DFilter< TInputMesh, TOutputMesh >::m_Step
protected

Number of iterations

Definition at line 317 of file itkDeformableSimplexMesh3DFilter.h.


The documentation for this class was generated from the following file: