ITK  5.0.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Types | Protected Member Functions | Private Member Functions | Private Attributes | List of all members
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage > Class Template Reference

#include <itkLesionSegmentationImageFilter8.h>

+ Inheritance diagram for itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >:
+ Collaboration diagram for itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >:

Detailed Description

template<typename TInputImage, typename TOutputImage>
class itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >

Definition at line 45 of file itkLesionSegmentationImageFilter8.h.

Public Types

using CannyEdgesFeatureGeneratorType = CannyEdgesFeatureGenerator< ImageDimension >
 
using ConstPointer = SmartPointer< const Self >
 
using IndexType = typename TInputImage::IndexType
 
using InputImagePixelType = typename TInputImage::PixelType
 
using InputImageType = TInputImage
 
using OutputImagePixelType = typename TOutputImage::PixelType
 
using OutputImageRegionType = typename TOutputImage::RegionType
 
using OutputImageType = TOutputImage
 
using Pointer = SmartPointer< Self >
 
using PointListType = typename SeedSpatialObjectType::PointListType
 
using RegionType = typename TOutputImage::RegionType
 
using SeedSpatialObjectType = itk::LandmarkSpatialObject< ImageDimension >
 
using Self = LesionSegmentationImageFilter8
 
using SigmaArrayType = typename CannyEdgesFeatureGeneratorType::SigmaArrayType
 
using SpacingType = typename InputImageType::SpacingType
 
using Superclass = ImageToImageFilter< TInputImage, TOutputImage >
 
- Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
using ConstPointer = SmartPointer< const Self >
 
using InputImageConstPointer = typename InputImageType::ConstPointer
 
using InputImagePixelType = typename InputImageType::PixelType
 
using InputImagePointer = typename InputImageType::Pointer
 
using InputImageRegionType = typename InputImageType::RegionType
 
using InputImageType = TInputImage
 
using OutputImagePixelType = typename Superclass::OutputImagePixelType
 
using OutputImageRegionType = typename Superclass::OutputImageRegionType
 
using Pointer = SmartPointer< Self >
 
using Self = ImageToImageFilter
 
using Superclass = ImageSource< TOutputImage >
 
- Public Types inherited from itk::ImageSource< TOutputImage >
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = Superclass::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType
 
using OutputImagePixelType = typename OutputImageType::PixelType
 
using OutputImagePointer = typename OutputImageType::Pointer
 
using OutputImageRegionType = typename OutputImageType::RegionType
 
using OutputImageType = TOutputImage
 
using Pointer = SmartPointer< Self >
 
using Self = ImageSource
 
using Superclass = ProcessObject
 
- Public Types inherited from itk::ProcessObject
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = DataObject::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArray = std::vector< DataObjectPointer >
 
using DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
 
using MultiThreaderType = MultiThreaderBase
 
using NameArray = std::vector< DataObjectIdentifierType >
 
using Pointer = SmartPointer< Self >
 
using Self = ProcessObject
 
using Superclass = Object
 
- Public Types inherited from itk::Object
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = Object
 
using Superclass = LightObject
 
- Public Types inherited from itk::LightObject
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = LightObject
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
void GenerateInputRequestedRegion () override throw (InvalidRequestedRegionError)
 
virtual const char * GetNameOfClass () const
 
PointListType GetSeeds ()
 
const char * GetStatusMessage () const
 
void ProgressUpdate (Object *caller, const EventObject &event)
 
void SetAbortGenerateData (const bool) override
 
void SetSeeds (PointListType p)
 
virtual void SetSigma (SigmaArrayType sigmas)
 
virtual void SetRegionOfInterest (RegionType _arg)
 
virtual RegionType GetRegionOfInterest ()
 
virtual void SetSigmoidBeta (double _arg)
 
virtual double GetSigmoidBeta ()
 
virtual void SetResampleThickSliceData (bool _arg)
 
virtual bool GetResampleThickSliceData ()
 
virtual void ResampleThickSliceDataOn ()
 
virtual void ResampleThickSliceDataOff ()
 
virtual void SetAnisotropyThreshold (double _arg)
 
virtual double GetAnisotropyThreshold ()
 
virtual void SetUseVesselEnhancingDiffusion (bool)
 
virtual void UseVesselEnhancingDiffusionOn ()
 
virtual void UseVesselEnhancingDiffusionOff ()
 
- Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageTypeGetInput () const
 
const InputImageTypeGetInput (unsigned int idx) const
 
void PopBackInput () override
 
void PopFrontInput () override
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TInputImage *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
 
OutputImageTypeGetOutput ()
 
const OutputImageTypeGetOutput () const
 
virtual void GraftOutput (DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
ProcessObject::DataObjectPointer MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
 
ProcessObject::DataObjectPointer MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreaderTypeGetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
void SetMultiThreader (MultiThreaderType *threader)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfWorkUnits (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfWorkUnits () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetReferenceCount (int) override
 
void UnRegister () const noexceptoverride
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMetaDataDictionary (MetaDataDictionary &&rrhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static constexpr unsigned int ImageDimension = TInputImage::ImageDimension
 
static constexpr unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static constexpr unsigned int InputImageDimension = TInputImage::ImageDimension
 
static constexpr unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static constexpr unsigned int OutputImageDimension = TOutputImage::ImageDimension
 

Protected Types

using CommandType = MemberCommand< Self >
 
using CropFilterType = RegionOfInterestImageFilter< InputImageType, InputImageType >
 
using FeatureAggregatorType = MinimumFeatureAggregator< ImageDimension >
 
using InputImageSpatialObjectType = ImageSpatialObject< ImageDimension, InputImagePixelType >
 
using IsotropicResamplerType = IsotropicResamplerImageFilter< InputImageType, InputImageType >
 
using LesionSegmentationMethodType = LesionSegmentationMethod< ImageDimension >
 
using LungWallGeneratorType = LungWallFeatureGenerator< ImageDimension >
 
using OutputSpatialObjectType = typename SegmentationModuleType::OutputSpatialObjectType
 
using SegmentationModuleType = FastMarchingAndGeodesicActiveContourLevelSetSegmentationModule< ImageDimension >
 
using SigmoidFeatureGeneratorType = SigmoidFeatureGenerator< ImageDimension >
 
using SizeType = typename RegionType::SizeType
 
using SizeValueType = typename SizeType::SizeValueType
 
using SpatialObjectType = typename SegmentationModuleType::SpatialObjectType
 
using VesselnessGeneratorType = SatoVesselnessSigmoidFeatureGenerator< ImageDimension >
 
- Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
using InputToOutputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::OutputImageDimension, Self::InputImageDimension >
 
using OutputToInputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::InputImageDimension, Self::OutputImageDimension >
 

Protected Member Functions

void GenerateData () override
 
void GenerateOutputInformation () override
 
 LesionSegmentationImageFilter8 ()
 
 LesionSegmentationImageFilter8 (const Self &)
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
 ImageToImageFilter ()
 
void VerifyInputInformation () ITKv5_CONST override
 
 ~ImageToImageFilter () override
 
void PushBackInput (const DataObject *input) override
 
void PushFrontInput (const DataObject *input) override
 
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void BeforeThreadedGenerateData ()
 
void ClassicMultiThread (ThreadFunctionType callbackFunction)
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter () const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
 ~ImageSource () override=default
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual void DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread)
 
virtual bool GetDynamicMultiThreading () const
 
virtual void SetDynamicMultiThreading (bool _arg)
 
virtual void DynamicMultiThreadingOn ()
 
virtual void DynamicMultiThreadingOff ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyPreconditions () ITKv5_CONST
 
 ~ProcessObject () override
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
 ~Object () override
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

 ~LesionSegmentationImageFilter8 () override
 

Private Attributes

double m_AnisotropyThreshold
 
CannyEdgesFeatureGeneratorType::Pointer m_CannyEdgesFeatureGenerator
 
CommandType::Pointer m_CommandObserver
 
CropFilterType::Pointer m_CropFilter
 
double m_FastMarchingDistanceFromSeeds
 
double m_FastMarchingStoppingTime
 
FeatureAggregatorType::Pointer m_FeatureAggregator
 
InputImageSpatialObjectType::Pointer m_InputSpatialObject
 
IsotropicResamplerType::Pointer m_IsotropicResampler
 
LesionSegmentationMethodType::Pointer m_LesionSegmentationMethod
 
LungWallGeneratorType::Pointer m_LungWallFeatureGenerator
 
RegionType m_RegionOfInterest
 
bool m_ResampleThickSliceData
 
SeedSpatialObjectType::PointListType m_Seeds
 
SegmentationModuleType::Pointer m_SegmentationModule
 
double m_SigmoidBeta
 
SigmoidFeatureGeneratorType::Pointer m_SigmoidFeatureGenerator
 
std::string m_StatusMessage
 
bool m_UserSpecifiedSigmas
 
VesselnessGeneratorType::Pointer m_VesselnessFeatureGenerator
 

Additional Inherited Members

- Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static
ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION 
ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::ImageSource< TOutputImage >
bool m_DynamicMultiThreading
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
std::atomic< int > m_ReferenceCount
 

Member Typedef Documentation

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CannyEdgesFeatureGeneratorType = CannyEdgesFeatureGenerator< ImageDimension >

Definition at line 82 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CommandType = MemberCommand< Self >
protected

Definition at line 179 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ConstPointer = SmartPointer<const Self>

Definition at line 59 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CropFilterType = RegionOfInterestImageFilter< InputImageType, InputImageType >
protected

Definition at line 172 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::FeatureAggregatorType = MinimumFeatureAggregator< ImageDimension >
protected

Definition at line 170 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::IndexType = typename TInputImage::IndexType

Definition at line 64 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImagePixelType = typename TInputImage::PixelType

Define pixel types.

Definition at line 62 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImageSpatialObjectType = ImageSpatialObject< ImageDimension, InputImagePixelType >
protected

Definition at line 175 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImageType = TInputImage

Image type alias support

Definition at line 54 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::IsotropicResamplerType = IsotropicResamplerImageFilter< InputImageType, InputImageType >
protected

Definition at line 176 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationMethodType = LesionSegmentationMethod< ImageDimension >
protected

Definition at line 166 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LungWallGeneratorType = LungWallFeatureGenerator< ImageDimension >
protected

Definition at line 168 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImagePixelType = typename TOutputImage::PixelType

Definition at line 63 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageRegionType = typename TOutputImage::RegionType

Typedef to describe the output image region type.

Definition at line 71 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageType = TOutputImage

Definition at line 55 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputSpatialObjectType = typename SegmentationModuleType::OutputSpatialObjectType
protected

Definition at line 174 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Pointer = SmartPointer<Self>

SmartPointer type alias support

Definition at line 58 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::PointListType = typename SeedSpatialObjectType::PointListType

Definition at line 136 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::RegionType = typename TOutputImage::RegionType

Definition at line 72 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SeedSpatialObjectType = itk::LandmarkSpatialObject< ImageDimension >

Definition at line 135 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SegmentationModuleType = FastMarchingAndGeodesicActiveContourLevelSetSegmentationModule< ImageDimension >
protected

Definition at line 171 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Self = LesionSegmentationImageFilter8

Standard "Self" & Superclass type alias.

Definition at line 50 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SigmaArrayType = typename CannyEdgesFeatureGeneratorType::SigmaArrayType

Definition at line 83 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SigmoidFeatureGeneratorType = SigmoidFeatureGenerator< ImageDimension >
protected

Definition at line 169 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SizeType = typename RegionType::SizeType
protected

Definition at line 177 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SizeValueType = typename SizeType::SizeValueType
protected

Definition at line 178 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SpacingType = typename InputImageType::SpacingType

Definition at line 65 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SpatialObjectType = typename SegmentationModuleType::SpatialObjectType
protected

Definition at line 173 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Superclass = ImageToImageFilter<TInputImage, TOutputImage>

Definition at line 51 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::VesselnessGeneratorType = SatoVesselnessSigmoidFeatureGenerator< ImageDimension >
protected

Definition at line 167 of file itkLesionSegmentationImageFilter8.h.

Constructor & Destructor Documentation

template<typename TInputImage , typename TOutputImage >
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationImageFilter8 ( )
protected
template<typename TInputImage , typename TOutputImage >
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationImageFilter8 ( const Self )
inlineprotected

Definition at line 159 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::~LesionSegmentationImageFilter8 ( )
inlineoverrideprivate

Definition at line 183 of file itkLesionSegmentationImageFilter8.h.

Member Function Documentation

template<typename TInputImage , typename TOutputImage >
virtual::itk::LightObject::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TInputImage , typename TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateData ( )
overrideprotectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling DynamicThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter can be threaded, it should NOT provide a GenerateData() method but should provide a DynamicThreadedGenerateData() instead.

See Also
ThreadedGenerateData()

Reimplemented from itk::ImageSource< TOutputImage >.

template<typename TInputImage , typename TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateInputRequestedRegion ( )
throw (InvalidRequestedRegionError
)
overridevirtual

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierarchy. Up till now, the base assumption has been that the largest possible region will be requested of the input.

This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.

See Also
ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateOutputInformation ( )
overrideprotectedvirtual

Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Reimplemented from itk::ProcessObject.

template<typename TInputImage , typename TOutputImage >
virtual double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetAnisotropyThreshold ( )
virtual

If ResampleThickSliceData is ON, set the maximum anisotropy. Defauls to twice the minimum spacing of the data. That will mean that 0.7 x 0.7 x 1.25 mm CT data will not be resampled. However 0.7 x 0.7 x 2.5 mm CT data will be resampled to 0.7 x 0.7 x 1.25 mm thick slices. Values less than 1.0 result in supersampling of the data. A value of 1 results in Isotropic resampling of the data.

template<typename TInputImage , typename TOutputImage >
virtual const char* itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >
virtual RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetRegionOfInterest ( )
virtual

Begin concept checking End concept checking Set the ROI

template<typename TInputImage , typename TOutputImage >
virtual bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetResampleThickSliceData ( )
virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<typename TInputImage , typename TOutputImage >
PointListType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetSeeds ( )
inline
template<typename TInputImage , typename TOutputImage >
virtual double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetSigmoidBeta ( )
virtual

Set the beta for the sigmoid intensity feature

template<typename TInputImage , typename TOutputImage >
const char* itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetStatusMessage ( ) const
inline
template<typename TInputImage , typename TOutputImage >
static Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::New ( )
static

Method for creation through the object factory.

template<typename TInputImage , typename TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ProgressUpdate ( Object caller,
const EventObject event 
)

Report progress

template<typename TInputImage , typename TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ResampleThickSliceDataOff ( )
virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<typename TInputImage , typename TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ResampleThickSliceDataOn ( )
virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<typename TInputImage , typename TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetAbortGenerateData ( const bool  )
overridevirtual

Override the superclass implementation so as to set the flag on all the filters within our lesion segmentation pipeline

Reimplemented from itk::ProcessObject.

template<typename TInputImage , typename TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetAnisotropyThreshold ( double  _arg)
virtual

If ResampleThickSliceData is ON, set the maximum anisotropy. Defauls to twice the minimum spacing of the data. That will mean that 0.7 x 0.7 x 1.25 mm CT data will not be resampled. However 0.7 x 0.7 x 2.5 mm CT data will be resampled to 0.7 x 0.7 x 1.25 mm thick slices. Values less than 1.0 result in supersampling of the data. A value of 1 results in Isotropic resampling of the data.

template<typename TInputImage , typename TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetRegionOfInterest ( RegionType  _arg)
virtual

Begin concept checking End concept checking Set the ROI

template<typename TInputImage , typename TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetResampleThickSliceData ( bool  _arg)
virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<typename TInputImage , typename TOutputImage >
void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSeeds ( PointListType  p)
inline
template<typename TInputImage , typename TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSigma ( SigmaArrayType  sigmas)
virtual
template<typename TInputImage , typename TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSigmoidBeta ( double  _arg)
virtual

Set the beta for the sigmoid intensity feature

template<typename TInputImage , typename TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetUseVesselEnhancingDiffusion ( bool  )
virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

template<typename TInputImage , typename TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::UseVesselEnhancingDiffusionOff ( )
virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

template<typename TInputImage , typename TOutputImage >
virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::UseVesselEnhancingDiffusionOn ( )
virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

Member Data Documentation

template<typename TInputImage , typename TOutputImage >
constexpr unsigned int itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ImageDimension = TInputImage::ImageDimension
static

ImageDimension constant

Definition at line 78 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_AnisotropyThreshold
private

Definition at line 204 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
CannyEdgesFeatureGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CannyEdgesFeatureGenerator
private

Definition at line 193 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
CommandType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CommandObserver
private

Definition at line 198 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
CropFilterType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CropFilter
private

Definition at line 196 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FastMarchingDistanceFromSeeds
private

Definition at line 187 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FastMarchingStoppingTime
private

Definition at line 186 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
FeatureAggregatorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FeatureAggregator
private

Definition at line 194 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
InputImageSpatialObjectType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_InputSpatialObject
private

Definition at line 202 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
IsotropicResamplerType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_IsotropicResampler
private

Definition at line 197 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
LesionSegmentationMethodType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_LesionSegmentationMethod
private

Definition at line 189 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
LungWallGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_LungWallFeatureGenerator
private

Definition at line 190 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_RegionOfInterest
private

Definition at line 199 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_ResampleThickSliceData
private

Definition at line 203 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
SeedSpatialObjectType::PointListType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_Seeds
private
template<typename TInputImage , typename TOutputImage >
SegmentationModuleType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SegmentationModule
private

Definition at line 195 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SigmoidBeta
private

Definition at line 183 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
SigmoidFeatureGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SigmoidFeatureGenerator
private

Definition at line 192 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
std::string itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_StatusMessage
private
template<typename TInputImage , typename TOutputImage >
bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_UserSpecifiedSigmas
private

Definition at line 205 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
VesselnessGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_VesselnessFeatureGenerator
private

Definition at line 191 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >
constexpr unsigned int itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension
static

Definition at line 80 of file itkLesionSegmentationImageFilter8.h.


The documentation for this class was generated from the following file: