#include <itkSegmentationLevelSetFunction.h>

Detailed Description

template<typename TImageType, typename TFeatureImageType = TImageType>
class itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >

: This object defines the API for a class of function objects which perform level set based segmentations. The SegmentationLevelSetImageFilter objects use these SegmentationLevelSetFunction objects to perform the numerical calculations which move a level set front to lock onto image features.

: In order to create a working function object, you must subclass the CalculateSpeedImage method to produce a "feature image" that is used by the parent LevelSetFunction class as the PropagationSpeed for its calculations.

See also: SegmentationLevelSetImageFilter; LevelSetFunction

Definition at line 47 of file itkSegmentationLevelSetFunction.h.

Inheritance diagram for itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >:

Collaboration diagram for itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >:

Public Types
using	ConstPointer = SmartPointer< const Self >

using	ContinuousIndexType = typename InterpolatorType::ContinuousIndexType

using	FeatureImageType = TFeatureImageType

using	FeatureScalarType = typename FeatureImageType::PixelType

using	IndexType = typename ImageType::IndexType

using	InterpolatorType = LinearInterpolateImageFunction< ImageType >

using	Pointer = SmartPointer< Self >

using	Self = SegmentationLevelSetFunction

using	Superclass = LevelSetFunction< TImageType >

using	VectorImageType = Image< VectorType, Self::ImageDimension >

using	VectorInterpolatorType = VectorLinearInterpolateImageFunction< VectorImageType >

Public Types inherited from itk::LevelSetFunction< TImageType >
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	ScalarValueType = PixelType

using	Self = LevelSetFunction

using	Superclass = FiniteDifferenceFunction< TImageType >

using	TimeStepType = double

using	VectorType = FixedArray< ScalarValueType, Self::ImageDimension >

Public Types inherited from itk::FiniteDifferenceFunction< TImageType >
using	ConstPointer = SmartPointer< const Self >

using	DefaultBoundaryConditionType = ZeroFluxNeumannBoundaryCondition< ImageType >

using	FloatOffsetType = Vector< float, Self::ImageDimension >

using	ImageType = TImageType

using	NeighborhoodScalesType = Vector< PixelRealType, Self::ImageDimension >

using	NeighborhoodType = ConstNeighborhoodIterator< TImageType, DefaultBoundaryConditionType >

using	PixelRealType = double

using	PixelType = typename ImageType::PixelType

using	Pointer = SmartPointer< Self >

using	RadiusType = typename ConstNeighborhoodIterator< TImageType >::RadiusType

using	Self = FiniteDifferenceFunction

using	Superclass = LightObject

using	TimeStepType = double

Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = LightObject

Public Member Functions
virtual void	AllocateAdvectionImage ()

virtual void	AllocateSpeedImage ()

virtual void	CalculateAdvectionImage ()

virtual void	CalculateSpeedImage ()

const char *	GetNameOfClass () const override

void	Initialize (const RadiusType &r) override

virtual void	ReverseExpansionDirection ()


virtual const FeatureImageType *	GetFeatureImage () const

virtual void	SetFeatureImage (const FeatureImageType *f)


virtual ImageType *	GetSpeedImage ()

void	SetSpeedImage (ImageType *s)


virtual VectorImageType *	GetAdvectionImage () const

void	SetAdvectionImage (VectorImageType *s)

Public Member Functions inherited from itk::LevelSetFunction< TImageType >
virtual ScalarValueType	Compute3DMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

virtual ScalarValueType	ComputeCurvatureTerm (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

TimeStepType	ComputeGlobalTimeStep (void *GlobalData) const override

virtual ScalarValueType	ComputeMeanCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

virtual ScalarValueType	ComputeMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

PixelType	ComputeUpdate (const NeighborhoodType &it, void *globalData, const FloatOffsetType &=FloatOffsetType(0.0)) override

virtual ScalarValueType	CurvatureSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=nullptr) const

void *	GetGlobalDataPointer () const override

bool	GetUseMinimalCurvature () const

virtual ScalarValueType	LaplacianSmoothingSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const

void	ReleaseGlobalDataPointer (void *GlobalData) const override

void	SetUseMinimalCurvature (bool b)

void	UseMinimalCurvatureOff ()

void	UseMinimalCurvatureOn ()

virtual void	SetAdvectionWeight (const ScalarValueType a)

ScalarValueType	GetAdvectionWeight () const

virtual void	SetPropagationWeight (const ScalarValueType p)

ScalarValueType	GetPropagationWeight () const

virtual void	SetCurvatureWeight (const ScalarValueType c)

ScalarValueType	GetCurvatureWeight () const

void	SetLaplacianSmoothingWeight (const ScalarValueType c)

ScalarValueType	GetLaplacianSmoothingWeight () const

void	SetEpsilonMagnitude (const ScalarValueType e)

ScalarValueType	GetEpsilonMagnitude () const

Public Member Functions inherited from itk::FiniteDifferenceFunction< TImageType >
const NeighborhoodScalesType	ComputeNeighborhoodScales () const

const RadiusType &	GetRadius () const

void	GetScaleCoefficients (PixelRealType vals[ImageDimension]) const

virtual void	InitializeIteration ()

void	SetRadius (const RadiusType &r)

void	SetScaleCoefficients (const PixelRealType vals[ImageDimension])

Public Member Functions inherited from itk::LightObject
Pointer	Clone () const

virtual Pointer	CreateAnother () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

void	Print (std::ostream &os, Indent indent=0) const

virtual void	Register () const

virtual void	SetReferenceCount (int)

virtual void	UnRegister () const noexcept

Static Public Attributes
static constexpr unsigned int	ImageDimension = Superclass::ImageDimension

Static Public Attributes inherited from itk::LevelSetFunction< TImageType >
static constexpr unsigned int	ImageDimension = Superclass::ImageDimension

Static Public Attributes inherited from itk::FiniteDifferenceFunction< TImageType >
static constexpr unsigned int	ImageDimension = ImageType::ImageDimension

Protected Member Functions
VectorType	AdvectionField (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd) const override

ScalarValueType	PropagationSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd) const override

	SegmentationLevelSetFunction ()

	~SegmentationLevelSetFunction () override=default

Protected Member Functions inherited from itk::LevelSetFunction< TImageType >
	LevelSetFunction ()

void	PrintSelf (std::ostream &os, Indent indent) const override

	~LevelSetFunction () override=default

Protected Member Functions inherited from itk::FiniteDifferenceFunction< TImageType >
	FiniteDifferenceFunction ()

	~FiniteDifferenceFunction () override=default

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
VectorImageType::Pointer	m_AdvectionImage {}

FeatureImageType::ConstPointer	m_FeatureImage {}

InterpolatorType::Pointer	m_Interpolator {}

ImageType::Pointer	m_SpeedImage {}

VectorInterpolatorType::Pointer	m_VectorInterpolator {}

Protected Attributes inherited from itk::LevelSetFunction< TImageType >
ScalarValueType	m_AdvectionWeight {}

OffsetValueType	m_Center { 0 }

ScalarValueType	m_CurvatureWeight {}

ScalarValueType	m_EpsilonMagnitude {}

ScalarValueType	m_LaplacianSmoothingWeight {}

ScalarValueType	m_PropagationWeight {}

bool	m_UseMinimalCurvature { false }

OffsetValueType	m_xStride [Self::ImageDimension] {}

std::slice	x_slice [Self::ImageDimension]

Protected Attributes inherited from itk::FiniteDifferenceFunction< TImageType >
RadiusType	m_Radius {}

PixelRealType	m_ScaleCoefficients [ImageDimension] {}

Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount {}

Additional Inherited Members
Static Public Member Functions inherited from itk::LevelSetFunction< TImageType >
static double	GetMaximumCurvatureTimeStep ()

static double	GetMaximumPropagationTimeStep ()

static Pointer	New ()

static void	SetMaximumCurvatureTimeStep (double n)

static void	SetMaximumPropagationTimeStep (double n)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Protected Member Functions inherited from itk::LevelSetFunction< TImageType >
static VectorType	InitializeZeroVectorConstant ()

Static Protected Attributes inherited from itk::LevelSetFunction< TImageType >
static double	m_DT

static double	m_WaveDT

static VectorType	m_ZeroVectorConstant

Member Typedef Documentation

◆ ConstPointer

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::ConstPointer = SmartPointer<const Self>

Definition at line 56 of file itkSegmentationLevelSetFunction.h.

◆ ContinuousIndexType

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::ContinuousIndexType = typename InterpolatorType::ContinuousIndexType

Continuous index type recognized by the interpolator

Definition at line 87 of file itkSegmentationLevelSetFunction.h.

◆ FeatureImageType

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::FeatureImageType = TFeatureImageType

Definition at line 65 of file itkSegmentationLevelSetFunction.h.

◆ FeatureScalarType

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::FeatureScalarType = typename FeatureImageType::PixelType

Definition at line 69 of file itkSegmentationLevelSetFunction.h.

◆ IndexType

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::IndexType = typename ImageType::IndexType

Definition at line 70 of file itkSegmentationLevelSetFunction.h.

◆ InterpolatorType

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::InterpolatorType = LinearInterpolateImageFunction<ImageType>

Define a scalar interpolator

Definition at line 81 of file itkSegmentationLevelSetFunction.h.

◆ Pointer

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::Pointer = SmartPointer<Self>

Definition at line 55 of file itkSegmentationLevelSetFunction.h.

◆ Self

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::Self = SegmentationLevelSetFunction

Standard class type aliases.

Definition at line 53 of file itkSegmentationLevelSetFunction.h.

◆ Superclass

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::Superclass = LevelSetFunction<TImageType>

Definition at line 54 of file itkSegmentationLevelSetFunction.h.

◆ VectorImageType

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::VectorImageType = Image<VectorType, Self::ImageDimension>

Define an image type for the advection field.

Definition at line 78 of file itkSegmentationLevelSetFunction.h.

◆ VectorInterpolatorType

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::VectorInterpolatorType = VectorLinearInterpolateImageFunction<VectorImageType>

Define a vector interpolator

Definition at line 84 of file itkSegmentationLevelSetFunction.h.

Constructor & Destructor Documentation

◆ ~SegmentationLevelSetFunction()

template<typename TImageType , typename TFeatureImageType = TImageType>

itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::~SegmentationLevelSetFunction ( )

overrideprotecteddefault

◆ SegmentationLevelSetFunction()

template<typename TImageType , typename TFeatureImageType = TImageType>

itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::SegmentationLevelSetFunction ( )

inlineprotected

Definition at line 186 of file itkSegmentationLevelSetFunction.h.

References New().

Member Function Documentation

◆ AdvectionField()

template<typename TImageType , typename TFeatureImageType = TImageType>

VectorType itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::AdvectionField	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	gd
	)		const

overrideprotectedvirtual

Advection field. Returns a vector from the computed advection field.

Reimplemented from itk::LevelSetFunction< TImageType >.

◆ AllocateAdvectionImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

virtual void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::AllocateAdvectionImage ( )

virtual

Allocates the image that will be used for the level set function's Advection field term. See LevelSetFunction for more information.

◆ AllocateSpeedImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

virtual void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::AllocateSpeedImage ( )

virtual

Allocates the image that will be used for the level set function's Propagation Speed term. See LevelSetFunction for more information.

◆ CalculateAdvectionImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

virtual void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::CalculateAdvectionImage ( )

inlinevirtual

This method must be defined in a subclass to implement a working function object. This method is called before the solver begins its work to produce the speed image used as the level set function's Advection field term. See LevelSetFunction for more information.

Reimplemented in itk::GeodesicActiveContourShapePriorLevelSetFunction< TImageType, TFeatureImageType >, itk::GeodesicActiveContourLevelSetFunction< TImageType, TFeatureImageType >, itk::CurvesLevelSetFunction< TImageType, TFeatureImageType >, and itk::CannySegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 141 of file itkSegmentationLevelSetFunction.h.

◆ CalculateSpeedImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

virtual void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::CalculateSpeedImage ( )

inlinevirtual

This method must be defined in a subclass to implement a working function object. This method is called before the solver begins its work to produce the speed image used as the level set function's Propagation speed term. See LevelSetFunction for more information.

Definition at line 133 of file itkSegmentationLevelSetFunction.h.

◆ GetAdvectionImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

virtual VectorImageType* itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetAdvectionImage ( ) const

inlinevirtual

Get/Set the image used as the advection field in the level set equation

Definition at line 114 of file itkSegmentationLevelSetFunction.h.

◆ GetFeatureImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

virtual const FeatureImageType* itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetFeatureImage ( ) const

inlinevirtual

Set/Get the image which will be used to calculate the speed function.

Definition at line 91 of file itkSegmentationLevelSetFunction.h.

◆ GetNameOfClass()

template<typename TImageType , typename TFeatureImageType = TImageType>

const char* itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetNameOfClass ( ) const

overridevirtual

See also: LightObject::GetNameOfClass()

Reimplemented from itk::LevelSetFunction< TImageType >.

Reimplemented in itk::ShapeDetectionLevelSetFunction< TImageType, TFeatureImageType >, itk::VectorThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >, itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >, and itk::ShapePriorSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

◆ GetSpeedImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

virtual ImageType* itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetSpeedImage ( )

inlinevirtual

Get/Set the image used as the speed function in the level set equation

Definition at line 104 of file itkSegmentationLevelSetFunction.h.

◆ Initialize()

template<typename TImageType , typename TFeatureImageType = TImageType>

void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::Initialize ( const RadiusType & r )

overridevirtual

This method creates the appropriate member variable operators for the level-set calculations. The argument to this function is a the radius necessary for performing the level-set calculations.

Reimplemented from itk::LevelSetFunction< TImageType >.

Reimplemented in itk::VectorThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >, itk::ShapeDetectionLevelSetFunction< TImageType, TFeatureImageType >, and itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >.

◆ PropagationSpeed()

template<typename TImageType , typename TFeatureImageType = TImageType>

ScalarValueType itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::PropagationSpeed	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	gd
	)		const

overrideprotectedvirtual

Returns the propagation speed from the precalculated speed image.

Reimplemented from itk::LevelSetFunction< TImageType >.

◆ ReverseExpansionDirection()

template<typename TImageType , typename TFeatureImageType = TImageType>

virtual void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::ReverseExpansionDirection ( )

virtual

Determines whether Positive or Negative speed terms will cause surface expansion. This method flips the sign of all of the speed, advection, etc terms. By convention, filters should be written so that POSITIVE speed terms cause surface expansion. Calling this method will toggle between the standard POSITIVE EXPANSION convention and the nonstandard NEGATIVE EXPANSION convention.

IMPORTANT: When adding terms to the level-set equation through subclassing you may need to override this function so that your new terms will be properly adjusted.

◆ SetAdvectionImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetAdvectionImage ( VectorImageType * s )

Get/Set the image used as the advection field in the level set equation

◆ SetFeatureImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

virtual void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetFeatureImage ( const FeatureImageType * f )

inlinevirtual

Set/Get the image which will be used to calculate the speed function.

Definition at line 96 of file itkSegmentationLevelSetFunction.h.

◆ SetSpeedImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

void itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetSpeedImage ( ImageType * s )

Get/Set the image used as the speed function in the level set equation

Member Data Documentation

◆ ImageDimension

template<typename TImageType , typename TFeatureImageType = TImageType>

constexpr unsigned int itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::ImageDimension = Superclass::ImageDimension

staticconstexpr

Extract some parameters from the superclass.

Definition at line 75 of file itkSegmentationLevelSetFunction.h.

◆ m_AdvectionImage

template<typename TImageType , typename TFeatureImageType = TImageType>

VectorImageType::Pointer itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::m_AdvectionImage {}

protected

The image holding the advection field for front propagation

Definition at line 175 of file itkSegmentationLevelSetFunction.h.

◆ m_FeatureImage

template<typename TImageType , typename TFeatureImageType = TImageType>

FeatureImageType::ConstPointer itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::m_FeatureImage {}

protected

The image whose features will be used to create a speed image

Definition at line 169 of file itkSegmentationLevelSetFunction.h.

◆ m_Interpolator

template<typename TImageType , typename TFeatureImageType = TImageType>

InterpolatorType::Pointer itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::m_Interpolator {}

protected

Definition at line 194 of file itkSegmentationLevelSetFunction.h.

◆ m_SpeedImage

template<typename TImageType , typename TFeatureImageType = TImageType>

ImageType::Pointer itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::m_SpeedImage {}

protected

The image holding the speed values for front propagation

Definition at line 172 of file itkSegmentationLevelSetFunction.h.

◆ m_VectorInterpolator

template<typename TImageType , typename TFeatureImageType = TImageType>

VectorInterpolatorType::Pointer itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >::m_VectorInterpolator {}

protected

Definition at line 196 of file itkSegmentationLevelSetFunction.h.

The documentation for this class was generated from the following file:

itkSegmentationLevelSetFunction.h

Detailed Description

template<typename TImageType, typename TFeatureImageType = TImageType> class itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >

Public Types

Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Additional Inherited Members

Member Typedef Documentation

◆ ConstPointer

◆ ContinuousIndexType

◆ FeatureImageType

◆ FeatureScalarType

◆ IndexType

◆ InterpolatorType

◆ Pointer

◆ Self

◆ Superclass

◆ VectorImageType

◆ VectorInterpolatorType

Constructor & Destructor Documentation

◆ ~SegmentationLevelSetFunction()

◆ SegmentationLevelSetFunction()

Member Function Documentation

◆ AdvectionField()

◆ AllocateAdvectionImage()

◆ AllocateSpeedImage()

◆ CalculateAdvectionImage()

◆ CalculateSpeedImage()

◆ GetAdvectionImage()

◆ GetFeatureImage()

◆ GetNameOfClass()

◆ GetSpeedImage()

◆ Initialize()

◆ PropagationSpeed()

◆ ReverseExpansionDirection()

◆ SetAdvectionImage()

◆ SetFeatureImage()

◆ SetSpeedImage()

Member Data Documentation

◆ ImageDimension

◆ m_AdvectionImage

◆ m_FeatureImage

◆ m_Interpolator

◆ m_SpeedImage

◆ m_VectorInterpolator

template<typename TImageType, typename TFeatureImageType = TImageType>
class itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >