#include <itkThresholdSegmentationLevelSetFunction.h>

Detailed Description

template<typename TImageType, typename TFeatureImageType = TImageType>
class itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >

This function is used in ThresholdSegmentationLevelSetImageFilter to segment structures in images based on intensity values.

SegmentationLevelSetFunction is a subclass of the generic LevelSetFunction.: It is useful for segmentations based on intensity values in an image. It works by constructing a speed term (feature image) with positive values inside an intensity window (between a low and high threshold) and negative values outside that intensity window. The evolving level set front will lock onto regions that are at the edges of the intensity window.

You may optionally add a Laplacian calculation on the image to the threshold-based speed term by setting the EdgeWeight parameter to a non-zero value. The Laplacian term will cause the evolving surface to be more strongly attracted to image edges. Several parameters control a preprocessing FeatureImage smoothing stage applied only to the Laplacian calculation.

: Image $ f $ is thresholded pixel by pixel using upper threshold $ U $ and lower threshold $ L $ according to the following formula.

: $ f(x) = \left\{ \begin{array}{ll} g(x) - L & \mbox{if $(g)x < (U-L)/2 + L$} \\ U - g(x) & \mbox{otherwise} \end{array} \right. $

See also: SegmentationLevelSetImageFunction; ThresholdSegmentationLevelSetImageFilter

Definition at line 57 of file itkThresholdSegmentationLevelSetFunction.h.

Inheritance diagram for itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >:

Collaboration diagram for itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >:

Public Types
using	ConstPointer = SmartPointer< const Self >

using	FeatureImageType = TFeatureImageType

using	Pointer = SmartPointer< Self >

using	Self = ThresholdSegmentationLevelSetFunction

using	Superclass = SegmentationLevelSetFunction< TImageType, TFeatureImageType >

Public Types inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
using	ConstPointer = SmartPointer< const Self >

using	ContinuousIndexType = typename InterpolatorType::ContinuousIndexType

using	FeatureImageType = TFeatureImageType

using	FeatureScalarType = typename FeatureImageType::PixelType

using	IndexType = typename ImageType::IndexType

using	InterpolatorType = LinearInterpolateImageFunction< ImageType >

using	Pointer = SmartPointer< Self >

using	Self = SegmentationLevelSetFunction

using	Superclass = LevelSetFunction< TImageType >

using	VectorImageType = Image< VectorType, Self::ImageDimension >

using	VectorInterpolatorType = VectorLinearInterpolateImageFunction< VectorImageType >

Public Types inherited from itk::LevelSetFunction< TImageType >
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	ScalarValueType = PixelType

using	Self = LevelSetFunction

using	Superclass = FiniteDifferenceFunction< TImageType >

using	TimeStepType = double

using	VectorType = FixedArray< ScalarValueType, Self::ImageDimension >

Public Types inherited from itk::FiniteDifferenceFunction< TImageType >
using	ConstPointer = SmartPointer< const Self >

using	DefaultBoundaryConditionType = ZeroFluxNeumannBoundaryCondition< ImageType >

using	FloatOffsetType = Vector< float, Self::ImageDimension >

using	ImageType = TImageType

using	NeighborhoodScalesType = Vector< PixelRealType, Self::ImageDimension >

using	NeighborhoodType = ConstNeighborhoodIterator< TImageType, DefaultBoundaryConditionType >

using	PixelRealType = double

using	PixelType = typename ImageType::PixelType

using	Pointer = SmartPointer< Self >

using	RadiusType = typename ConstNeighborhoodIterator< TImageType >::RadiusType

using	Self = FiniteDifferenceFunction

using	Superclass = LightObject

using	TimeStepType = double

Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = LightObject

Public Member Functions
void	CalculateSpeedImage () override

ScalarValueType	GetEdgeWeight () const

const char *	GetNameOfClass () const override

ScalarValueType	GetSmoothingConductance () const

int	GetSmoothingIterations () const

ScalarValueType	GetSmoothingTimeStep () const

void	Initialize (const RadiusType &r) override

void	SetEdgeWeight (const ScalarValueType p)

void	SetSmoothingConductance (const ScalarValueType p)

void	SetSmoothingIterations (const int p)

void	SetSmoothingTimeStep (const ScalarValueType i)


void	SetUpperThreshold (FeatureScalarType f)

FeatureScalarType	GetUpperThreshold () const

void	SetLowerThreshold (FeatureScalarType f)

FeatureScalarType	GetLowerThreshold () const

Public Member Functions inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
virtual void	AllocateAdvectionImage ()

virtual void	AllocateSpeedImage ()

virtual void	CalculateAdvectionImage ()

virtual void	ReverseExpansionDirection ()

virtual const FeatureImageType *	GetFeatureImage () const

virtual void	SetFeatureImage (const FeatureImageType *f)

virtual ImageType *	GetSpeedImage ()

void	SetSpeedImage (ImageType *s)

virtual VectorImageType *	GetAdvectionImage () const

void	SetAdvectionImage (VectorImageType *s)

Public Member Functions inherited from itk::LevelSetFunction< TImageType >
virtual ScalarValueType	Compute3DMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

virtual ScalarValueType	ComputeCurvatureTerm (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

TimeStepType	ComputeGlobalTimeStep (void *GlobalData) const override

virtual ScalarValueType	ComputeMeanCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

virtual ScalarValueType	ComputeMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

PixelType	ComputeUpdate (const NeighborhoodType &it, void *globalData, const FloatOffsetType &=FloatOffsetType(0.0)) override

virtual ScalarValueType	CurvatureSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=nullptr) const

void *	GetGlobalDataPointer () const override

bool	GetUseMinimalCurvature () const

virtual ScalarValueType	LaplacianSmoothingSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const

void	ReleaseGlobalDataPointer (void *GlobalData) const override

void	SetUseMinimalCurvature (bool b)

void	UseMinimalCurvatureOff ()

void	UseMinimalCurvatureOn ()

virtual void	SetAdvectionWeight (const ScalarValueType a)

ScalarValueType	GetAdvectionWeight () const

virtual void	SetPropagationWeight (const ScalarValueType p)

ScalarValueType	GetPropagationWeight () const

virtual void	SetCurvatureWeight (const ScalarValueType c)

ScalarValueType	GetCurvatureWeight () const

void	SetLaplacianSmoothingWeight (const ScalarValueType c)

ScalarValueType	GetLaplacianSmoothingWeight () const

void	SetEpsilonMagnitude (const ScalarValueType e)

ScalarValueType	GetEpsilonMagnitude () const

Public Member Functions inherited from itk::FiniteDifferenceFunction< TImageType >
const NeighborhoodScalesType	ComputeNeighborhoodScales () const

const RadiusType &	GetRadius () const

void	GetScaleCoefficients (PixelRealType vals[ImageDimension]) const

virtual void	InitializeIteration ()

void	SetRadius (const RadiusType &r)

void	SetScaleCoefficients (const PixelRealType vals[ImageDimension])

Public Member Functions inherited from itk::LightObject
Pointer	Clone () const

virtual Pointer	CreateAnother () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

void	Print (std::ostream &os, Indent indent=0) const

virtual void	Register () const

virtual void	SetReferenceCount (int)

virtual void	UnRegister () const noexcept

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::LevelSetFunction< TImageType >
static double	GetMaximumCurvatureTimeStep ()

static double	GetMaximumPropagationTimeStep ()

static Pointer	New ()

static void	SetMaximumCurvatureTimeStep (double n)

static void	SetMaximumPropagationTimeStep (double n)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes
static constexpr unsigned int	ImageDimension = Superclass::ImageDimension

Static Public Attributes inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
static constexpr unsigned int	ImageDimension = Superclass::ImageDimension

Static Public Attributes inherited from itk::LevelSetFunction< TImageType >
static constexpr unsigned int	ImageDimension = Superclass::ImageDimension

Static Public Attributes inherited from itk::FiniteDifferenceFunction< TImageType >
static constexpr unsigned int	ImageDimension = ImageType::ImageDimension

Protected Member Functions
void	PrintSelf (std::ostream &os, Indent indent) const override

	ThresholdSegmentationLevelSetFunction ()

	~ThresholdSegmentationLevelSetFunction () override=default

Protected Member Functions inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
VectorType	AdvectionField (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd) const override

ScalarValueType	PropagationSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd) const override

	SegmentationLevelSetFunction ()

	~SegmentationLevelSetFunction () override=default

Protected Member Functions inherited from itk::LevelSetFunction< TImageType >
	LevelSetFunction ()

	~LevelSetFunction () override=default

Protected Member Functions inherited from itk::FiniteDifferenceFunction< TImageType >
	FiniteDifferenceFunction ()

	~FiniteDifferenceFunction () override=default

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
ScalarValueType	m_EdgeWeight {}

FeatureScalarType	m_LowerThreshold {}

ScalarValueType	m_SmoothingConductance {}

int	m_SmoothingIterations {}

ScalarValueType	m_SmoothingTimeStep {}

FeatureScalarType	m_UpperThreshold {}

Protected Attributes inherited from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >
VectorImageType::Pointer	m_AdvectionImage {}

FeatureImageType::ConstPointer	m_FeatureImage {}

InterpolatorType::Pointer	m_Interpolator {}

ImageType::Pointer	m_SpeedImage {}

VectorInterpolatorType::Pointer	m_VectorInterpolator {}

Protected Attributes inherited from itk::LevelSetFunction< TImageType >
ScalarValueType	m_AdvectionWeight {}

OffsetValueType	m_Center { 0 }

ScalarValueType	m_CurvatureWeight {}

ScalarValueType	m_EpsilonMagnitude {}

ScalarValueType	m_LaplacianSmoothingWeight {}

ScalarValueType	m_PropagationWeight {}

bool	m_UseMinimalCurvature { false }

OffsetValueType	m_xStride [Self::ImageDimension] {}

std::slice	x_slice [Self::ImageDimension]

Protected Attributes inherited from itk::FiniteDifferenceFunction< TImageType >
RadiusType	m_Radius {}

PixelRealType	m_ScaleCoefficients [ImageDimension] {}

Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount {}

Additional Inherited Members
Static Protected Member Functions inherited from itk::LevelSetFunction< TImageType >
static VectorType	InitializeZeroVectorConstant ()

Static Protected Attributes inherited from itk::LevelSetFunction< TImageType >
static double	m_DT

static double	m_WaveDT

static VectorType	m_ZeroVectorConstant

Member Typedef Documentation

◆ ConstPointer

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ConstPointer = SmartPointer<const Self>

Definition at line 67 of file itkThresholdSegmentationLevelSetFunction.h.

◆ FeatureImageType

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::FeatureImageType = TFeatureImageType

Definition at line 68 of file itkThresholdSegmentationLevelSetFunction.h.

◆ Pointer

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::Pointer = SmartPointer<Self>

Definition at line 66 of file itkThresholdSegmentationLevelSetFunction.h.

◆ Self

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::Self = ThresholdSegmentationLevelSetFunction

Standard class type aliases.

Definition at line 64 of file itkThresholdSegmentationLevelSetFunction.h.

◆ Superclass

template<typename TImageType , typename TFeatureImageType = TImageType>

using itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::Superclass = SegmentationLevelSetFunction<TImageType, TFeatureImageType>

Definition at line 65 of file itkThresholdSegmentationLevelSetFunction.h.

Constructor & Destructor Documentation

◆ ThresholdSegmentationLevelSetFunction()

template<typename TImageType , typename TFeatureImageType = TImageType>

itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::ThresholdSegmentationLevelSetFunction ( )

inlineprotected

Definition at line 181 of file itkThresholdSegmentationLevelSetFunction.h.

References itk::NumericTraits< T >::max(), and itk::NumericTraits< T >::NonpositiveMin().

◆ ~ThresholdSegmentationLevelSetFunction()

template<typename TImageType , typename TFeatureImageType = TImageType>

itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::~ThresholdSegmentationLevelSetFunction ( )

overrideprotecteddefault

Member Function Documentation

◆ CalculateSpeedImage()

template<typename TImageType , typename TFeatureImageType = TImageType>

void itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::CalculateSpeedImage ( )

overridevirtual

This method must be defined in a subclass to implement a working function object. This method is called before the solver begins its work to produce the speed image used as the level set function's Propagation speed term. See LevelSetFunction for more information.

Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.

◆ GetEdgeWeight()

template<typename TImageType , typename TFeatureImageType = TImageType>

ScalarValueType itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetEdgeWeight ( ) const

inline

Definition at line 130 of file itkThresholdSegmentationLevelSetFunction.h.

◆ GetLowerThreshold()

template<typename TImageType , typename TFeatureImageType = TImageType>

FeatureScalarType itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetLowerThreshold ( ) const

inline

Set/Get threshold values

Definition at line 102 of file itkThresholdSegmentationLevelSetFunction.h.

◆ GetNameOfClass()

template<typename TImageType , typename TFeatureImageType = TImageType>

const char* itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetNameOfClass ( ) const

overridevirtual

See also: LightObject::GetNameOfClass()

Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.

◆ GetSmoothingConductance()

template<typename TImageType , typename TFeatureImageType = TImageType>

ScalarValueType itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetSmoothingConductance ( ) const

inline

Definition at line 145 of file itkThresholdSegmentationLevelSetFunction.h.

◆ GetSmoothingIterations()

template<typename TImageType , typename TFeatureImageType = TImageType>

int itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetSmoothingIterations ( ) const

inline

Definition at line 160 of file itkThresholdSegmentationLevelSetFunction.h.

◆ GetSmoothingTimeStep()

template<typename TImageType , typename TFeatureImageType = TImageType>

ScalarValueType itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetSmoothingTimeStep ( ) const

inline

Definition at line 175 of file itkThresholdSegmentationLevelSetFunction.h.

◆ GetUpperThreshold()

template<typename TImageType , typename TFeatureImageType = TImageType>

FeatureScalarType itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::GetUpperThreshold ( ) const

inline

Set/Get threshold values

Definition at line 92 of file itkThresholdSegmentationLevelSetFunction.h.

◆ Initialize()

template<typename TImageType , typename TFeatureImageType = TImageType>

void itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::Initialize ( const RadiusType & r )

inlineoverridevirtual

This method creates the appropriate member variable operators for the level-set calculations. The argument to this function is a the radius necessary for performing the level-set calculations.

Reimplemented from itk::SegmentationLevelSetFunction< TImageType, TFeatureImageType >.

Definition at line 112 of file itkThresholdSegmentationLevelSetFunction.h.

◆ New()

template<typename TImageType , typename TFeatureImageType = TImageType>

static Pointer itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::New ( )

static

Method for creation through the object factory.

◆ PrintSelf()

template<typename TImageType , typename TFeatureImageType = TImageType>

void itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

inlineoverrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::LevelSetFunction< TImageType >.

Definition at line 197 of file itkThresholdSegmentationLevelSetFunction.h.

◆ SetEdgeWeight()

template<typename TImageType , typename TFeatureImageType = TImageType>

void itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetEdgeWeight ( const ScalarValueType p )

inline

Set/Get the weight applied to the edge (Laplacian) attractor in the speed term function. Zero will turn this term off.

Definition at line 124 of file itkThresholdSegmentationLevelSetFunction.h.

◆ SetLowerThreshold()

template<typename TImageType , typename TFeatureImageType = TImageType>

void itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetLowerThreshold ( FeatureScalarType f )

inline

Set/Get threshold values

Definition at line 97 of file itkThresholdSegmentationLevelSetFunction.h.

◆ SetSmoothingConductance()

template<typename TImageType , typename TFeatureImageType = TImageType>

void itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetSmoothingConductance ( const ScalarValueType p )

inline

Anisotropic diffusion is applied to the FeatureImage before calculating the Laplacian (edge) term. This method sets/gets the smoothing conductance.

Definition at line 139 of file itkThresholdSegmentationLevelSetFunction.h.

◆ SetSmoothingIterations()

template<typename TImageType , typename TFeatureImageType = TImageType>

void itk::ThresholdSegmentationLevelSetFunction< TImageType, TFeatureImageType >::SetSmoothingIterations ( const int p )

inline

Anisotropic diffusion is applied to the FeatureImage before calculating the Laplacian (edge) term. This method sets/gets the number of diffusion iterations.

Definition at line 154 of file itkThresholdSegmentationLevelSetFunction.h.