template<typename TFixedImage, typename TMovingImage, typename TDisplacementField>
class itk::VariationalSymmetricDiffeomorphicRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField >
Symmetric diffeomorphic deformable registration of two images using static velocity fields.
VariationalSymmetricDiffeomorphicRegistrationFilter is derived from VariationalRegistrationFilter and aims to minimize the functional
with and is a static velocity field. Let denote the force term corresponding to the similarity measure and denote the linear differential operator associated with the regularization term , VariationalSymmetricDiffeomorphicRegistrationFilter implements the following iterative scheme to compute (and ):
- initialize (default ), and
- do
- compute the forward update field using and the warped image
- compute the backward update field using the warped image and
- compute the next velocity field by
- compute the next transformation and the inverse
- until is fulfilled or
The force term is implemented in a subclass of VariationalRegistrationFunction. The computation of the regularization with is implemented in a subclass of VariationalRegistrationRegularizer. The exponentiation of the velocity field is done using the ExponentialDisplacementFieldImageFilter.
You can set SmoothUpdateFieldOn() to smooth the velocity field before exponentiation.
- See Also
- VariationalRegistrationFilter
-
VariationalDiffeomorphicRegistrationFilter
-
VariationalRegistrationFunction
-
VariationalRegistrationRegularizer
-
ExponentialDisplacementFieldImageFilter
-
DenseFiniteDifferenceImageFilter
- Note
- This class was developed with funding from the German Research Foundation (DFG: EH 224/3-1 and HA 235/9-1).
- Author
- Alexander Schmidt-Richberg
-
Rene Werner
-
Jan Ehrhardt
For details see:
- Alexander Schmidt-Richberg, Rene Werner, Heinz Handels and Jan Ehrhardt: A Flexible Variational Registration Framework, Insight Journal, 2014 http://hdl.handle.net/10380/3460
- Rene Werner, Alexander Schmidt-Richberg, Heinz Handels and Jan Ehrhardt: Estimation of lung motion fields in 4D CT data by variational non-linear intensity-based registration: A comparison and evaluation study, Phys. Med. Biol., 2014
- Jan Ehrhardt, Rene Werner, Alexander Schmidt-Richberg and Heinz Handels: Statistical modeling of 4D respiratory lung motion using diffeomorphic image registration. IEEE Trans. Med. Imaging, 30(2), 2011
Definition at line 90 of file itkVariationalSymmetricDiffeomorphicRegistrationFilter.h.
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using | ConstPointer = SmartPointer< const Self > |
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using | DisplacementFieldPointer = typename DisplacementFieldType::Pointer |
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using | DisplacementFieldType = TDisplacementField |
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using | FixedImageConstPointer = typename FixedImageType::ConstPointer |
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using | FixedImagePointer = typename FixedImageType::Pointer |
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using | FixedImageType = TFixedImage |
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using | MovingImageConstPointer = typename MovingImageType::ConstPointer |
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using | MovingImagePointer = typename MovingImageType::Pointer |
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using | MovingImageType = TMovingImage |
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using | OutputImageType = typename Superclass::OutputImageType |
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using | Pointer = SmartPointer< Self > |
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using | RegistrationFunctionType = typename Superclass::RegistrationFunctionType |
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using | RegularizerType = typename Superclass::RegularizerType |
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using | Self = VariationalSymmetricDiffeomorphicRegistrationFilter |
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using | Superclass = VariationalDiffeomorphicRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > |
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using | TimeStepType = typename Superclass::TimeStepType |
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using | UpdateBufferType = OutputImageType |
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using | ConstPointer = SmartPointer< const Self > |
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using | DisplacementFieldPointer = typename DisplacementFieldType::Pointer |
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using | DisplacementFieldType = TDisplacementField |
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using | FixedImageConstPointer = typename FixedImageType::ConstPointer |
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using | FixedImagePointer = typename FixedImageType::Pointer |
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using | FixedImageType = TFixedImage |
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using | MovingImageConstPointer = typename MovingImageType::ConstPointer |
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using | MovingImagePointer = typename MovingImageType::Pointer |
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using | MovingImageType = TMovingImage |
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using | OutputImageType = typename Superclass::OutputImageType |
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using | Pointer = SmartPointer< Self > |
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using | RegistrationFunctionType = typename Superclass::RegistrationFunctionType |
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using | RegularizerType = typename Superclass::RegularizerType |
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using | Self = VariationalDiffeomorphicRegistrationFilter |
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using | Superclass = VariationalRegistrationFilter< TFixedImage, TMovingImage, TDisplacementField > |
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using | TimeStepType = typename Superclass::TimeStepType |
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using | ConstPointer = SmartPointer< const Self > |
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using | DefaultRegistrationFunctionType = VariationalRegistrationDemonsFunction< FixedImageType, MovingImageType, DisplacementFieldType > |
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using | DefaultRegularizerType = VariationalRegistrationDiffusionRegularizer< DisplacementFieldType > |
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using | DisplacementFieldPointer = typename DisplacementFieldType::Pointer |
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using | DisplacementFieldType = TDisplacementField |
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using | FixedImageConstPointer = typename FixedImageType::ConstPointer |
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using | FixedImagePointer = typename FixedImageType::Pointer |
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using | FixedImageType = TFixedImage |
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using | MaskImageConstPointer = typename MaskImageType::ConstPointer |
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using | MaskImagePixelType = unsigned char |
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using | MaskImagePointer = typename MaskImageType::Pointer |
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using | MaskImageType = Image< MaskImagePixelType, ImageDimension > |
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using | MovingImageConstPointer = typename MovingImageType::ConstPointer |
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using | MovingImagePointer = typename MovingImageType::Pointer |
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using | MovingImageType = TMovingImage |
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using | OutputImageType = typename Superclass::OutputImageType |
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using | Pointer = SmartPointer< Self > |
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using | RegistrationFunctionType = VariationalRegistrationFunction< FixedImageType, MovingImageType, DisplacementFieldType > |
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using | RegularizerPointer = typename RegularizerType::Pointer |
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using | RegularizerType = VariationalRegistrationRegularizer< DisplacementFieldType > |
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using | Self = VariationalRegistrationFilter |
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using | Superclass = DenseFiniteDifferenceImageFilter< TDisplacementField, TDisplacementField > |
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using | TimeStepType = typename Superclass::TimeStepType |
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using | ConstPointer = SmartPointer< const Self > |
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using | FiniteDifferenceFunctionType = typename Superclass::FiniteDifferenceFunctionType |
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using | InputImageType = typename Superclass::InputImageType |
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using | OutputImageType = typename Superclass::OutputImageType |
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using | PixelType = typename Superclass::PixelType |
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using | Pointer = SmartPointer< Self > |
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using | Self = DenseFiniteDifferenceImageFilter |
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using | Superclass = FiniteDifferenceImageFilter< TDisplacementField, TDisplacementField > |
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using | TimeStepType = typename Superclass::TimeStepType |
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using | UpdateBufferType = OutputImageType |
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using | ConstPointer = SmartPointer< const Self > |
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using | FiniteDifferenceFunctionType = FiniteDifferenceFunction< TDisplacementField > |
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using | InputImageType = TDisplacementField |
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using | InputPixelType = typename TDisplacementField::PixelType |
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using | InputPixelValueType = typename NumericTraits< InputPixelType >::ValueType |
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using | NeighborhoodScalesType = typename FiniteDifferenceFunctionType::NeighborhoodScalesType |
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using | OutputImageType = TDisplacementField |
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using | OutputPixelType = typename TDisplacementField::PixelType |
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using | OutputPixelValueType = typename NumericTraits< OutputPixelType >::ValueType |
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using | PixelType = OutputPixelType |
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using | Pointer = SmartPointer< Self > |
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using | RadiusType = typename FiniteDifferenceFunctionType::RadiusType |
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using | Self = FiniteDifferenceImageFilter |
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using | Superclass = InPlaceImageFilter< TDisplacementField, TDisplacementField > |
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using | TimeStepType = typename FiniteDifferenceFunctionType::TimeStepType |
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using | ConstPointer = SmartPointer< const Self > |
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using | InputImageConstPointer = typename InputImageType::ConstPointer |
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using | InputImagePixelType = typename InputImageType::PixelType |
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using | InputImagePointer = typename InputImageType::Pointer |
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using | InputImageRegionType = typename InputImageType::RegionType |
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using | InputImageType = TDisplacementField |
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using | OutputImagePixelType = typename Superclass::OutputImagePixelType |
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using | OutputImagePointer = typename Superclass::OutputImagePointer |
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using | OutputImageRegionType = typename Superclass::OutputImageRegionType |
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using | OutputImageType = typename Superclass::OutputImageType |
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using | Pointer = SmartPointer< Self > |
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using | Self = InPlaceImageFilter |
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using | Superclass = ImageToImageFilter< TDisplacementField, TDisplacementField > |
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using | ConstPointer = SmartPointer< const Self > |
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using | InputImageConstPointer = typename InputImageType::ConstPointer |
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using | InputImagePixelType = typename InputImageType::PixelType |
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using | InputImagePointer = typename InputImageType::Pointer |
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using | InputImageRegionType = typename InputImageType::RegionType |
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using | InputImageType = TDisplacementField |
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using | OutputImagePixelType = typename Superclass::OutputImagePixelType |
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using | OutputImageRegionType = typename Superclass::OutputImageRegionType |
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using | Pointer = SmartPointer< Self > |
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using | Self = ImageToImageFilter |
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using | Superclass = ImageSource< TDisplacementField > |
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using | ConstPointer = SmartPointer< const Self > |
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using | DataObjectIdentifierType = Superclass::DataObjectIdentifierType |
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using | DataObjectPointer = DataObject::Pointer |
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using | DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType |
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using | OutputImagePixelType = typename OutputImageType::PixelType |
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using | OutputImagePointer = typename OutputImageType::Pointer |
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using | OutputImageRegionType = typename OutputImageType::RegionType |
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using | OutputImageType = TDisplacementField |
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using | Pointer = SmartPointer< Self > |
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using | Self = ImageSource |
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using | Superclass = ProcessObject |
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using | ConstPointer = SmartPointer< const Self > |
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using | DataObjectIdentifierType = DataObject::DataObjectIdentifierType |
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using | DataObjectPointer = DataObject::Pointer |
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using | DataObjectPointerArray = std::vector< DataObjectPointer > |
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using | DataObjectPointerArraySizeType = DataObjectPointerArray::size_type |
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using | MultiThreaderType = MultiThreaderBase |
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using | NameArray = std::vector< DataObjectIdentifierType > |
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using | Pointer = SmartPointer< Self > |
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using | Self = ProcessObject |
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using | Superclass = Object |
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using | ConstPointer = SmartPointer< const Self > |
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using | Pointer = SmartPointer< Self > |
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using | Self = Object |
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using | Superclass = LightObject |
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using | ConstPointer = SmartPointer< const Self > |
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using | Pointer = SmartPointer< Self > |
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using | Self = LightObject |
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void | ApplyUpdate (const TimeStepType &dt) override |
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virtual void | CalcInverseDeformationFromVelocityField (const DisplacementFieldType *velocityField) |
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TimeStepType | CalculateChange () override |
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virtual const UpdateBufferType * | GetBackwardUpdateBuffer () const |
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virtual UpdateBufferType * | GetModifiableBackwardUpdateBuffer () |
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void | Initialize () override |
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virtual void | InitializeBackwardIteration () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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void | ThreadedApplyUpdate (const TimeStepType &dt, const ThreadRegionType ®ionToProcess, unsigned int threadId) override |
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| VariationalSymmetricDiffeomorphicRegistrationFilter () |
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| ~VariationalSymmetricDiffeomorphicRegistrationFilter () override |
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void | ApplyUpdate (const TimeStepType &dt) override |
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virtual void | CalcDeformationFromVelocityField (const DisplacementFieldType *velocityField) |
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virtual FieldExponentiatorPointer | GetExponentiator () |
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| VariationalDiffeomorphicRegistrationFilter () |
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| ~VariationalDiffeomorphicRegistrationFilter () override |
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void | ApplyUpdate (const TimeStepType &dt) override |
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void | CopyInputToOutput () override |
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void | GenerateInputRequestedRegion () override |
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void | GenerateOutputInformation () override |
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bool | Halt () override |
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void | InitializeIteration () override |
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| VariationalRegistrationFilter () |
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void | VerifyInputInformation () const override |
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| ~VariationalRegistrationFilter () override |
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RegistrationFunctionType * | DownCastDifferenceFunctionType () |
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const RegistrationFunctionType * | DownCastDifferenceFunctionType () const |
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void | AllocateUpdateBuffer () override |
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void | ApplyUpdate (const TimeStepType &dt) override |
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TimeStepType | CalculateChange () override |
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void | CopyInputToOutput () override |
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| DenseFiniteDifferenceImageFilter () |
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virtual UpdateBufferType * | GetUpdateBuffer () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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virtual TimeStepType | ThreadedCalculateChange (const ThreadRegionType ®ionToProcess, ThreadIdType threadId) |
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| ~DenseFiniteDifferenceImageFilter () override=default |
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virtual void | ApplyUpdate (const TimeStepType &dt)=0 |
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| FiniteDifferenceImageFilter () |
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void | GenerateData () override |
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void | GenerateInputRequestedRegion () override |
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virtual void | PostProcessOutput () |
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void | PrintSelf (std::ostream &os, Indent indent) const override |
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virtual TimeStepType | ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const |
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virtual void | SetElapsedIterations (IdentifierType _arg) |
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virtual bool | ThreadedHalt (void *) |
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| ~FiniteDifferenceImageFilter () override=default |
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void | AllocateOutputs () override |
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virtual bool | GetRunningInPlace () const |
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| InPlaceImageFilter ()=default |
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void | ReleaseInputs () override |
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| ~InPlaceImageFilter () override=default |
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virtual void | CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion) |
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virtual void | CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion) |
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| ImageToImageFilter () |
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void | VerifyInputInformation () ITKv5_CONST override |
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| ~ImageToImageFilter () override |
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void | PushBackInput (const DataObject *input) override |
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void | PushFrontInput (const DataObject *input) override |
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virtual void | AfterThreadedGenerateData () |
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virtual void | BeforeThreadedGenerateData () |
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void | ClassicMultiThread (ThreadFunctionType callbackFunction) |
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virtual const
ImageRegionSplitterBase * | GetImageRegionSplitter () const |
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| ImageSource () |
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virtual unsigned int | SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion) |
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| ~ImageSource () override=default |
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virtual void | ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) |
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virtual void | DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread) |
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virtual bool | GetDynamicMultiThreading () const |
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virtual void | SetDynamicMultiThreading (bool _arg) |
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virtual void | DynamicMultiThreadingOn () |
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virtual void | DynamicMultiThreadingOff () |
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virtual void | AddInput (DataObject *input) |
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void | AddOptionalInputName (const DataObjectIdentifierType &) |
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void | AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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virtual void | AddOutput (DataObject *output) |
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bool | AddRequiredInputName (const DataObjectIdentifierType &) |
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bool | AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx) |
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virtual void | CacheInputReleaseDataFlags () |
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virtual void | GenerateOutputRequestedRegion (DataObject *output) |
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DataObject * | GetInput (const DataObjectIdentifierType &key) |
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const DataObject * | GetInput (const DataObjectIdentifierType &key) const |
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virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredInputs () const |
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virtual const
DataObjectPointerArraySizeType & | GetNumberOfRequiredOutputs () const |
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bool | IsIndexedInputName (const DataObjectIdentifierType &) const |
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bool | IsIndexedOutputName (const DataObjectIdentifierType &) const |
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bool | IsRequiredInputName (const DataObjectIdentifierType &) const |
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DataObjectPointerArraySizeType | MakeIndexFromInputName (const DataObjectIdentifierType &name) const |
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DataObjectPointerArraySizeType | MakeIndexFromOutputName (const DataObjectIdentifierType &name) const |
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DataObjectIdentifierType | MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const |
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DataObjectIdentifierType | MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const |
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| ProcessObject () |
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virtual void | PropagateResetPipeline () |
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virtual void | RemoveInput (const DataObjectIdentifierType &key) |
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virtual void | RemoveInput (DataObjectPointerArraySizeType) |
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virtual void | RemoveOutput (const DataObjectIdentifierType &key) |
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virtual void | RemoveOutput (DataObjectPointerArraySizeType idx) |
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bool | RemoveRequiredInputName (const DataObjectIdentifierType &) |
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virtual void | RestoreInputReleaseDataFlags () |
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virtual void | SetInput (const DataObjectIdentifierType &key, DataObject *input) |
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virtual void | SetNthInput (DataObjectPointerArraySizeType num, DataObject *input) |
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virtual void | SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output) |
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void | SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num) |
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void | SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num) |
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virtual void | SetNumberOfRequiredInputs (DataObjectPointerArraySizeType) |
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virtual void | SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg) |
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virtual void | SetOutput (const DataObjectIdentifierType &key, DataObject *output) |
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virtual void | SetPrimaryInput (DataObject *input) |
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virtual void | SetPrimaryOutput (DataObject *output) |
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void | SetRequiredInputNames (const NameArray &) |
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virtual void | VerifyPreconditions () ITKv5_CONST |
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| ~ProcessObject () override |
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DataObject * | GetInput (DataObjectPointerArraySizeType idx) |
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const DataObject * | GetInput (DataObjectPointerArraySizeType idx) const |
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DataObject * | GetPrimaryInput () |
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const DataObject * | GetPrimaryInput () const |
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virtual void | SetPrimaryInputName (const DataObjectIdentifierType &key) |
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virtual const char * | GetPrimaryInputName () const |
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DataObject * | GetOutput (const DataObjectIdentifierType &key) |
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const DataObject * | GetOutput (const DataObjectIdentifierType &key) const |
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virtual void | SetPrimaryOutputName (const DataObjectIdentifierType &key) |
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virtual const char * | GetPrimaryOutputName () const |
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DataObject * | GetOutput (DataObjectPointerArraySizeType idx) |
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const DataObject * | GetOutput (DataObjectPointerArraySizeType idx) const |
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DataObject * | GetPrimaryOutput () |
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const DataObject * | GetPrimaryOutput () const |
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| Object () |
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bool | PrintObservers (std::ostream &os, Indent indent) const |
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virtual void | SetTimeStamp (const TimeStamp &time) |
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| ~Object () override |
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virtual LightObject::Pointer | InternalClone () const |
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| LightObject () |
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virtual void | PrintHeader (std::ostream &os, Indent indent) const |
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virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
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virtual | ~LightObject () |
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