itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage > Class Template Reference

#include <itkLesionSegmentationImageFilter8.h>

Inheritance diagram for itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >:

Collaboration diagram for itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >:

Detailed Description

template<typename TInputImage, typename TOutputImage>
class itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >

Definition at line 45 of file itkLesionSegmentationImageFilter8.h.

Public Types
using	CannyEdgesFeatureGeneratorType = CannyEdgesFeatureGenerator< ImageDimension >
using	ConstPointer = SmartPointer< const Self >
using	IndexType = typename TInputImage::IndexType
using	InputImagePixelType = typename TInputImage::PixelType
using	InputImageType = TInputImage
using	OutputImagePixelType = typename TOutputImage::PixelType
using	OutputImageRegionType = typename TOutputImage::RegionType
using	OutputImageType = TOutputImage
using	Pointer = SmartPointer< Self >
using	PointListType = typename SeedSpatialObjectType::PointListType
using	RegionType = typename TOutputImage::RegionType
using	SeedSpatialObjectType = itk::LandmarkSpatialObject< ImageDimension >
using	Self = LesionSegmentationImageFilter8
using	SigmaArrayType = typename CannyEdgesFeatureGeneratorType::SigmaArrayType
using	SpacingType = typename InputImageType::SpacingType
using	Superclass = ImageToImageFilter< TInputImage, TOutputImage >
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
using	ConstPointer = SmartPointer< const Self >
using	InputImageConstPointer = typename InputImageType::ConstPointer
using	InputImagePixelType = typename InputImageType::PixelType
using	InputImagePointer = typename InputImageType::Pointer
using	InputImageRegionType = typename InputImageType::RegionType
using	InputImageType = TInputImage
using	OutputImagePixelType = typename Superclass::OutputImagePixelType
using	OutputImageRegionType = typename Superclass::OutputImageRegionType
using	Pointer = SmartPointer< Self >
using	Self = ImageToImageFilter
using	Superclass = ImageSource< TOutputImage >
Public Types inherited from itk::ImageSource< TOutputImage >
using	ConstPointer = SmartPointer< const Self >
using	DataObjectIdentifierType = Superclass::DataObjectIdentifierType
using	DataObjectPointer = DataObject::Pointer
using	DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType
using	OutputImagePixelType = typename OutputImageType::PixelType
using	OutputImagePointer = typename OutputImageType::Pointer
using	OutputImageRegionType = typename OutputImageType::RegionType
using	OutputImageType = TOutputImage
using	Pointer = SmartPointer< Self >
using	Self = ImageSource
using	Superclass = ProcessObject
Public Types inherited from itk::ProcessObject
using	ConstPointer = SmartPointer< const Self >
using	DataObjectIdentifierType = DataObject::DataObjectIdentifierType
using	DataObjectPointer = DataObject::Pointer
using	DataObjectPointerArray = std::vector< DataObjectPointer >
using	DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
using	MultiThreaderType = MultiThreaderBase
using	NameArray = std::vector< DataObjectIdentifierType >
using	Pointer = SmartPointer< Self >
using	Self = ProcessObject
using	Superclass = Object
Public Types inherited from itk::Object
using	ConstPointer = SmartPointer< const Self >
using	Pointer = SmartPointer< Self >
using	Self = Object
using	Superclass = LightObject
Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >
using	Pointer = SmartPointer< Self >
using	Self = LightObject

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const
void	GenerateInputRequestedRegion () override throw (InvalidRequestedRegionError)
virtual const char *	GetNameOfClass () const
PointListType	GetSeeds ()
const char *	GetStatusMessage () const
void	ProgressUpdate (Object *caller, const EventObject &event)
void	SetAbortGenerateData (const bool) override
void	SetSeeds (PointListType p)
virtual void	SetSigma (SigmaArrayType sigmas)
virtual void	SetRegionOfInterest (RegionType _arg)
virtual RegionType	GetRegionOfInterest ()
virtual void	SetSigmoidBeta (double _arg)
virtual double	GetSigmoidBeta ()
virtual void	SetResampleThickSliceData (bool _arg)
virtual bool	GetResampleThickSliceData ()
virtual void	ResampleThickSliceDataOn ()
virtual void	ResampleThickSliceDataOff ()
virtual void	SetAnisotropyThreshold (double _arg)
virtual double	GetAnisotropyThreshold ()
virtual void	SetUseVesselEnhancingDiffusion (bool)
virtual void	UseVesselEnhancingDiffusionOn ()
virtual void	UseVesselEnhancingDiffusionOff ()
Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput () const
const InputImageType *	GetInput (unsigned int idx) const
void	PopBackInput () override
void	PopFrontInput () override
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const TInputImage *image)
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)
OutputImageType *	GetOutput ()
const OutputImageType *	GetOutput () const
virtual void	GraftOutput (DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData () const
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
NameArray	GetInputNames () const
DataObjectPointerArray	GetInputs ()
MultiThreaderType *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
DataObjectPointerArray	GetOutputs ()
virtual const float &	GetProgress () const
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
void	SetMultiThreader (MultiThreaderType *threader)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float progress)
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag () const
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfWorkUnits (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfWorkUnits () const
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetReferenceCount (int) override
void	UnRegister () const noexceptoverride
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()

Static Public Attributes
static constexpr unsigned int	ImageDimension = TInputImage::ImageDimension
static constexpr unsigned int	OutputImageDimension = TOutputImage::ImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static constexpr unsigned int	InputImageDimension = TInputImage::ImageDimension
static constexpr unsigned int	OutputImageDimension = TOutputImage::ImageDimension
Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static constexpr unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Types
using	CommandType = MemberCommand< Self >
using	CropFilterType = RegionOfInterestImageFilter< InputImageType, InputImageType >
using	FeatureAggregatorType = MinimumFeatureAggregator< ImageDimension >
using	InputImageSpatialObjectType = ImageSpatialObject< ImageDimension, InputImagePixelType >
using	IsotropicResamplerType = IsotropicResamplerImageFilter< InputImageType, InputImageType >
using	LesionSegmentationMethodType = LesionSegmentationMethod< ImageDimension >
using	LungWallGeneratorType = LungWallFeatureGenerator< ImageDimension >
using	OutputSpatialObjectType = typename SegmentationModuleType::OutputSpatialObjectType
using	SegmentationModuleType = FastMarchingAndGeodesicActiveContourLevelSetSegmentationModule< ImageDimension >
using	SigmoidFeatureGeneratorType = SigmoidFeatureGenerator< ImageDimension >
using	SizeType = typename RegionType::SizeType
using	SizeValueType = typename SizeType::SizeValueType
using	SpatialObjectType = typename SegmentationModuleType::SpatialObjectType
using	VesselnessGeneratorType = SatoVesselnessSigmoidFeatureGenerator< ImageDimension >
Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
using	InputToOutputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::OutputImageDimension, Self::InputImageDimension >
using	OutputToInputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::InputImageDimension, Self::OutputImageDimension >

Protected Member Functions
void	GenerateData () override
void	GenerateOutputInformation () override
	LesionSegmentationImageFilter8 ()
	LesionSegmentationImageFilter8 (const Self &)
void	PrintSelf (std::ostream &os, Indent indent) const override
Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
	ImageToImageFilter ()
void	VerifyInputInformation () ITKv5_CONST override
	~ImageToImageFilter () override
void	PushBackInput (const DataObject *input) override
void	PushFrontInput (const DataObject *input) override
Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
virtual void	BeforeThreadedGenerateData ()
void	ClassicMultiThread (ThreadFunctionType callbackFunction)
virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
	~ImageSource () override=default
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread)
virtual bool	GetDynamicMultiThreading () const
virtual void	SetDynamicMultiThreading (bool _arg)
virtual void	DynamicMultiThreadingOn ()
virtual void	DynamicMultiThreadingOff ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
void	AddOptionalInputName (const DataObjectIdentifierType &)
void	AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const
bool	IsIndexedInputName (const DataObjectIdentifierType &) const
bool	IsIndexedOutputName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const
DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyPreconditions () ITKv5_CONST
	~ProcessObject () override
DataObject *	GetInput (DataObjectPointerArraySizeType idx)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryInputName () const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryOutputName () const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
	~Object () override
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Member Functions
	~LesionSegmentationImageFilter8 () override

Private Attributes
double	m_AnisotropyThreshold
CannyEdgesFeatureGeneratorType::Pointer	m_CannyEdgesFeatureGenerator
CommandType::Pointer	m_CommandObserver
CropFilterType::Pointer	m_CropFilter
double	m_FastMarchingDistanceFromSeeds
double	m_FastMarchingStoppingTime
FeatureAggregatorType::Pointer	m_FeatureAggregator
InputImageSpatialObjectType::Pointer	m_InputSpatialObject
IsotropicResamplerType::Pointer	m_IsotropicResampler
LesionSegmentationMethodType::Pointer	m_LesionSegmentationMethod
LungWallGeneratorType::Pointer	m_LungWallFeatureGenerator
RegionType	m_RegionOfInterest
bool	m_ResampleThickSliceData
SeedSpatialObjectType::PointListType	m_Seeds
SegmentationModuleType::Pointer	m_SegmentationModule
double	m_SigmoidBeta
SigmoidFeatureGeneratorType::Pointer	m_SigmoidFeatureGenerator
std::string	m_StatusMessage
bool	m_UserSpecifiedSigmas
VesselnessGeneratorType::Pointer	m_VesselnessFeatureGenerator

Additional Inherited Members
Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderCallback (void *arg)
Protected Attributes inherited from itk::ImageSource< TOutputImage >
bool	m_DynamicMultiThreading
Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime
bool	m_Updating
Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount

Member Typedef Documentation

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CannyEdgesFeatureGeneratorType = CannyEdgesFeatureGenerator< ImageDimension >

Definition at line 82 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CommandType = MemberCommand< Self >

protected

Definition at line 179 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ConstPointer = SmartPointer<const Self>

Definition at line 59 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CropFilterType = RegionOfInterestImageFilter< InputImageType, InputImageType >

protected

Definition at line 172 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::FeatureAggregatorType = MinimumFeatureAggregator< ImageDimension >

protected

Definition at line 170 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::IndexType = typename TInputImage::IndexType

Definition at line 64 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImagePixelType = typename TInputImage::PixelType

Define pixel types.

Definition at line 62 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImageSpatialObjectType = ImageSpatialObject< ImageDimension, InputImagePixelType >

protected

Definition at line 175 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImageType = TInputImage

Image type alias support

Definition at line 54 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::IsotropicResamplerType = IsotropicResamplerImageFilter< InputImageType, InputImageType >

protected

Definition at line 176 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationMethodType = LesionSegmentationMethod< ImageDimension >

protected

Definition at line 166 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LungWallGeneratorType = LungWallFeatureGenerator< ImageDimension >

protected

Definition at line 168 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImagePixelType = typename TOutputImage::PixelType

Definition at line 63 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageRegionType = typename TOutputImage::RegionType

Typedef to describe the output image region type.

Definition at line 71 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageType = TOutputImage

Definition at line 55 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputSpatialObjectType = typename SegmentationModuleType::OutputSpatialObjectType

protected

Definition at line 174 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Pointer = SmartPointer<Self>

SmartPointer type alias support

Definition at line 58 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::PointListType = typename SeedSpatialObjectType::PointListType

Definition at line 136 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::RegionType = typename TOutputImage::RegionType

Definition at line 72 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SeedSpatialObjectType = itk::LandmarkSpatialObject< ImageDimension >

Definition at line 135 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SegmentationModuleType = FastMarchingAndGeodesicActiveContourLevelSetSegmentationModule< ImageDimension >

protected

Definition at line 171 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Self = LesionSegmentationImageFilter8

Standard "Self" & Superclass type alias.

Definition at line 50 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SigmaArrayType = typename CannyEdgesFeatureGeneratorType::SigmaArrayType

Definition at line 83 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SigmoidFeatureGeneratorType = SigmoidFeatureGenerator< ImageDimension >

protected

Definition at line 169 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SizeType = typename RegionType::SizeType

protected

Definition at line 177 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SizeValueType = typename SizeType::SizeValueType

protected

Definition at line 178 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SpacingType = typename InputImageType::SpacingType

Definition at line 65 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SpatialObjectType = typename SegmentationModuleType::SpatialObjectType

protected

Definition at line 173 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Superclass = ImageToImageFilter<TInputImage, TOutputImage>

Definition at line 51 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

using itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::VesselnessGeneratorType = SatoVesselnessSigmoidFeatureGenerator< ImageDimension >

protected

Definition at line 167 of file itkLesionSegmentationImageFilter8.h.

Constructor & Destructor Documentation

template<typename TInputImage , typename TOutputImage >

itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationImageFilter8 ( )

protected

template<typename TInputImage , typename TOutputImage >

itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationImageFilter8 ( const Self &  )

inlineprotected

Definition at line 159 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::~LesionSegmentationImageFilter8 ( )

inlineoverrideprivate

Definition at line 183 of file itkLesionSegmentationImageFilter8.h.

Member Function Documentation

template<typename TInputImage , typename TOutputImage >

virtual::itk::LightObject::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TInputImage , typename TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateData ( )

overrideprotectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling DynamicThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter can be threaded, it should NOT provide a GenerateData() method but should provide a DynamicThreadedGenerateData() instead.

See Also

ThreadedGenerateData()

Reimplemented from itk::ImageSource< TOutputImage >.

template<typename TInputImage , typename TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateInputRequestedRegion ( ) throw ( InvalidRequestedRegionError )

overridevirtual

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierarchy. Up till now, the base assumption has been that the largest possible region will be requested of the input.

This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.

See Also

ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateOutputInformation ( )

overrideprotectedvirtual

Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Reimplemented from itk::ProcessObject.

template<typename TInputImage , typename TOutputImage >

virtual double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetAnisotropyThreshold ( )

virtual

If ResampleThickSliceData is ON, set the maximum anisotropy. Defauls to twice the minimum spacing of the data. That will mean that 0.7 x 0.7 x 1.25 mm CT data will not be resampled. However 0.7 x 0.7 x 2.5 mm CT data will be resampled to 0.7 x 0.7 x 1.25 mm thick slices. Values less than 1.0 result in supersampling of the data. A value of 1 results in Isotropic resampling of the data.

template<typename TInputImage , typename TOutputImage >

virtual const char* itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

virtual RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetRegionOfInterest ( )

virtual

Begin concept checking End concept checking Set the ROI

template<typename TInputImage , typename TOutputImage >

virtual bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetResampleThickSliceData ( )

virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<typename TInputImage , typename TOutputImage >

PointListType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetSeeds ( )

inline

Definition at line 139 of file itkLesionSegmentationImageFilter8.h.

References itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_Seeds.

template<typename TInputImage , typename TOutputImage >

virtual double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetSigmoidBeta ( )

virtual

Set the beta for the sigmoid intensity feature

template<typename TInputImage , typename TOutputImage >

const char* itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetStatusMessage ( ) const

inline

Definition at line 145 of file itkLesionSegmentationImageFilter8.h.

References itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_StatusMessage.

template<typename TInputImage , typename TOutputImage >

static Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::New ( )

static

Method for creation through the object factory.

template<typename TInputImage , typename TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ProgressUpdate	(	Object *	caller,
		const EventObject &	event
	)

Report progress

template<typename TInputImage , typename TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ResampleThickSliceDataOff ( )

virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<typename TInputImage , typename TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ResampleThickSliceDataOn ( )

virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<typename TInputImage , typename TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetAbortGenerateData ( const bool  )

overridevirtual

Override the superclass implementation so as to set the flag on all the filters within our lesion segmentation pipeline

Reimplemented from itk::ProcessObject.

template<typename TInputImage , typename TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetAnisotropyThreshold ( double  _arg )

virtual

If ResampleThickSliceData is ON, set the maximum anisotropy. Defauls to twice the minimum spacing of the data. That will mean that 0.7 x 0.7 x 1.25 mm CT data will not be resampled. However 0.7 x 0.7 x 2.5 mm CT data will be resampled to 0.7 x 0.7 x 1.25 mm thick slices. Values less than 1.0 result in supersampling of the data. A value of 1 results in Isotropic resampling of the data.

template<typename TInputImage , typename TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetRegionOfInterest ( RegionType  _arg )

virtual

Begin concept checking End concept checking Set the ROI

template<typename TInputImage , typename TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetResampleThickSliceData ( bool  _arg )

virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<typename TInputImage , typename TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSeeds ( PointListType  p )

inline

Definition at line 138 of file itkLesionSegmentationImageFilter8.h.

References itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_Seeds.

template<typename TInputImage , typename TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSigma ( SigmaArrayType  sigmas )

virtual

template<typename TInputImage , typename TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSigmoidBeta ( double  _arg )

virtual

Set the beta for the sigmoid intensity feature

template<typename TInputImage , typename TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetUseVesselEnhancingDiffusion ( bool  )

virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

template<typename TInputImage , typename TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::UseVesselEnhancingDiffusionOff ( )

virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

template<typename TInputImage , typename TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::UseVesselEnhancingDiffusionOn ( )

virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

Member Data Documentation

template<typename TInputImage , typename TOutputImage >

constexpr unsigned int itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ImageDimension = TInputImage::ImageDimension

static

ImageDimension constant

Definition at line 78 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_AnisotropyThreshold

private

Definition at line 204 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

CannyEdgesFeatureGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CannyEdgesFeatureGenerator

private

Definition at line 193 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

CommandType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CommandObserver

private

Definition at line 198 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

CropFilterType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CropFilter

private

Definition at line 196 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FastMarchingDistanceFromSeeds

private

Definition at line 187 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FastMarchingStoppingTime

private

Definition at line 186 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

FeatureAggregatorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FeatureAggregator

private

Definition at line 194 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

InputImageSpatialObjectType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_InputSpatialObject

private

Definition at line 202 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

IsotropicResamplerType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_IsotropicResampler

private

Definition at line 197 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

LesionSegmentationMethodType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_LesionSegmentationMethod

private

Definition at line 189 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

LungWallGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_LungWallFeatureGenerator

private

Definition at line 190 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_RegionOfInterest

private

Definition at line 199 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_ResampleThickSliceData

private

Definition at line 203 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

SeedSpatialObjectType::PointListType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_Seeds

private

Definition at line 201 of file itkLesionSegmentationImageFilter8.h.

Referenced by itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetSeeds(), and itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSeeds().

template<typename TInputImage , typename TOutputImage >

SegmentationModuleType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SegmentationModule

private

Definition at line 195 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SigmoidBeta

private

Definition at line 183 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

SigmoidFeatureGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SigmoidFeatureGenerator

private

Definition at line 192 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

std::string itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_StatusMessage

private

Definition at line 200 of file itkLesionSegmentationImageFilter8.h.

Referenced by itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetStatusMessage().

template<typename TInputImage , typename TOutputImage >

bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_UserSpecifiedSigmas

private

Definition at line 205 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

VesselnessGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_VesselnessFeatureGenerator

private

Definition at line 191 of file itkLesionSegmentationImageFilter8.h.

template<typename TInputImage , typename TOutputImage >

constexpr unsigned int itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension

static

Definition at line 80 of file itkLesionSegmentationImageFilter8.h.

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The documentation for this class was generated from the following file:

• itkLesionSegmentationImageFilter8.h