itkShapeLabelObject.h

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/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkShapeLabelObject_h
#define itkShapeLabelObject_h
 
#include "itkLabelObject.h"
#include "itkLabelMap.h"
#include "itkMath.h"
#include "itkAffineTransform.h"
 
namespace itk
{
template <typename TLabel, unsigned int VImageDimension>
class ShapeLabelObject : public LabelObject<TLabel, VImageDimension>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(ShapeLabelObject);
 
  using Self = ShapeLabelObject;
  using Superclass = LabelObject<TLabel, VImageDimension>;
  using LabelObjectType = typename Superclass::LabelObjectType;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
  using ConstWeakPointer = WeakPointer<const Self>;
 
  itkNewMacro(Self);
 
  itkTypeMacro(ShapeLabelObject, LabelObject);
 
  using LabelMapType = LabelMap<Self>;
 
  static constexpr unsigned int ImageDimension = VImageDimension;
 
  using IndexType = typename Superclass::IndexType;
 
  using LabelType = TLabel;
 
  using LineType = typename Superclass::LineType;
 
  using LengthType = typename Superclass::LengthType;
 
  using AttributeType = typename Superclass::AttributeType;
 
  static constexpr AttributeType NUMBER_OF_PIXELS = 100;
 
  static constexpr AttributeType PHYSICAL_SIZE = 101;
 
  static constexpr AttributeType CENTROID = 104;
 
  static constexpr AttributeType BOUNDING_BOX = 105;
 
  static constexpr AttributeType NUMBER_OF_PIXELS_ON_BORDER = 106;
 
  static constexpr AttributeType PERIMETER_ON_BORDER = 107;
 
  static constexpr AttributeType FERET_DIAMETER = 108;
 
  static constexpr AttributeType PRINCIPAL_MOMENTS = 109;
 
  static constexpr AttributeType PRINCIPAL_AXES = 110;
 
  static constexpr AttributeType ELONGATION = 111;
 
  static constexpr AttributeType PERIMETER = 112;
 
  static constexpr AttributeType ROUNDNESS = 113;
 
  static constexpr AttributeType EQUIVALENT_SPHERICAL_RADIUS = 114;
 
  static constexpr AttributeType EQUIVALENT_SPHERICAL_PERIMETER = 115;
 
  static constexpr AttributeType EQUIVALENT_ELLIPSOID_DIAMETER = 116;
 
  static constexpr AttributeType FLATNESS = 117;
 
  static constexpr AttributeType PERIMETER_ON_BORDER_RATIO = 118;
 
 
  static constexpr AttributeType ORIENTED_BOUNDING_BOX_ORIGIN = 119;
 
 
  static constexpr AttributeType ORIENTED_BOUNDING_BOX_SIZE = 120;
 
  static AttributeType
  GetAttributeFromName(const std::string & s)
  {
    if (s == "NumberOfPixels")
    {
      return NUMBER_OF_PIXELS;
    }
    else if (s == "PhysicalSize")
    {
      return PHYSICAL_SIZE;
    }
    else if (s == "Centroid")
    {
      return CENTROID;
    }
    else if (s == "BoundingBox")
    {
      return BOUNDING_BOX;
    }
    else if (s == "NumberOfPixelsOnBorder")
    {
      return NUMBER_OF_PIXELS_ON_BORDER;
    }
    else if (s == "PerimeterOnBorder")
    {
      return PERIMETER_ON_BORDER;
    }
    else if (s == "FeretDiameter")
    {
      return FERET_DIAMETER;
    }
    else if (s == "PrincipalMoments")
    {
      return PRINCIPAL_MOMENTS;
    }
    else if (s == "PrincipalAxes")
    {
      return PRINCIPAL_AXES;
    }
    else if (s == "Elongation")
    {
      return ELONGATION;
    }
    else if (s == "Perimeter")
    {
      return PERIMETER;
    }
    else if (s == "Roundness")
    {
      return ROUNDNESS;
    }
    else if (s == "EquivalentSphericalRadius")
    {
      return EQUIVALENT_SPHERICAL_RADIUS;
    }
    else if (s == "EquivalentSphericalPerimeter")
    {
      return EQUIVALENT_SPHERICAL_PERIMETER;
    }
    else if (s == "EquivalentEllipsoidDiameter")
    {
      return EQUIVALENT_ELLIPSOID_DIAMETER;
    }
    else if (s == "Flatness")
    {
      return FLATNESS;
    }
    else if (s == "PerimeterOnBorderRatio")
    {
      return PERIMETER_ON_BORDER_RATIO;
    }
    else if (s == "OrientedBoundingBoxOrigin")
    {
      return ORIENTED_BOUNDING_BOX_ORIGIN;
    }
    else if (s == "OrientedBoundingBoxSize")
    {
      return ORIENTED_BOUNDING_BOX_SIZE;
    }
    // can't recognize the name
    return Superclass::GetAttributeFromName(s);
  }
 
  static std::string
  GetNameFromAttribute(const AttributeType & a)
  {
    std::string name;
    switch (a)
    {
      case NUMBER_OF_PIXELS:
        name = "NumberOfPixels";
        break;
      case PHYSICAL_SIZE:
        name = "PhysicalSize";
        break;
      case CENTROID:
        name = "Centroid";
        break;
      case BOUNDING_BOX:
        name = "BoundingBox";
        break;
      case NUMBER_OF_PIXELS_ON_BORDER:
        name = "NumberOfPixelsOnBorder";
        break;
      case PERIMETER_ON_BORDER:
        name = "PerimeterOnBorder";
        break;
      case FERET_DIAMETER:
        name = "FeretDiameter";
        break;
      case PRINCIPAL_MOMENTS:
        name = "PrincipalMoments";
        break;
      case PRINCIPAL_AXES:
        name = "PrincipalAxes";
        break;
      case ELONGATION:
        name = "Elongation";
        break;
      case PERIMETER:
        name = "Perimeter";
        break;
      case ROUNDNESS:
        name = "Roundness";
        break;
      case EQUIVALENT_SPHERICAL_RADIUS:
        name = "EquivalentSphericalRadius";
        break;
      case EQUIVALENT_SPHERICAL_PERIMETER:
        name = "EquivalentSphericalPerimeter";
        break;
      case EQUIVALENT_ELLIPSOID_DIAMETER:
        name = "EquivalentEllipsoidDiameter";
        break;
      case FLATNESS:
        name = "Flatness";
        break;
      case PERIMETER_ON_BORDER_RATIO:
        name = "PerimeterOnBorderRatio";
        break;
      case ORIENTED_BOUNDING_BOX_ORIGIN:
        name = "OrientedBoundingBoxOrigin";
        break;
      case ORIENTED_BOUNDING_BOX_SIZE:
        name = "OrientedBoundingBoxSize";
        break;
      default:
        // can't recognize the name
        name = Superclass::GetNameFromAttribute(a);
        break;
    }
    return name;
  }
 
  using RegionType = ImageRegion<VImageDimension>;
 
  using CentroidType = Point<double, VImageDimension>;
 
  using MatrixType = Matrix<double, VImageDimension, VImageDimension>;
 
  using VectorType = Vector<double, VImageDimension>;
 
public:
  using OrientedBoundingBoxDirectionType = MatrixType;
 
  using OrientedBoundingBoxPointType = Point<double, VImageDimension>;
 
  using OrientedBoundingBoxSizeType = Vector<double, VImageDimension>;
 
  using OrientedBoundingBoxVerticesType =
    FixedArray<OrientedBoundingBoxPointType, Math::UnsignedPower<unsigned int>(2, ImageDimension)>;
 
 
  const RegionType &
  GetBoundingBox() const
  {
    return m_BoundingBox;
  }
 
  void
  SetBoundingBox(const RegionType & v)
  {
    m_BoundingBox = v;
  }
 
  const double &
  GetPhysicalSize() const
  {
    return m_PhysicalSize;
  }
 
  void
  SetPhysicalSize(const double & v)
  {
    m_PhysicalSize = v;
  }
 
  const SizeValueType &
  GetNumberOfPixels() const
  {
    return m_NumberOfPixels;
  }
 
  void
  SetNumberOfPixels(const SizeValueType & v)
  {
    m_NumberOfPixels = v;
  }
 
  const CentroidType &
  GetCentroid() const
  {
    return m_Centroid;
  }
 
  void
  SetCentroid(const CentroidType & centroid)
  {
    m_Centroid = centroid;
  }
 
  const SizeValueType &
  GetNumberOfPixelsOnBorder() const
  {
    return m_NumberOfPixelsOnBorder;
  }
 
  void
  SetNumberOfPixelsOnBorder(const SizeValueType & v)
  {
    m_NumberOfPixelsOnBorder = v;
  }
 
  const double &
  GetPerimeterOnBorder() const
  {
    return m_PerimeterOnBorder;
  }
 
  void
  SetPerimeterOnBorder(const double & v)
  {
    m_PerimeterOnBorder = v;
  }
 
  const double &
  GetFeretDiameter() const
  {
    return m_FeretDiameter;
  }
 
  void
  SetFeretDiameter(const double & v)
  {
    m_FeretDiameter = v;
  }
 
  const VectorType &
  GetPrincipalMoments() const
  {
    return m_PrincipalMoments;
  }
 
  void
  SetPrincipalMoments(const VectorType & v)
  {
    m_PrincipalMoments = v;
  }
 
  const MatrixType &
  GetPrincipalAxes() const
  {
    return m_PrincipalAxes;
  }
 
  void
  SetPrincipalAxes(const MatrixType & v)
  {
    m_PrincipalAxes = v;
  }
 
  const double &
  GetElongation() const
  {
    return m_Elongation;
  }
 
  void
  SetElongation(const double & v)
  {
    m_Elongation = v;
  }
 
  const double &
  GetPerimeter() const
  {
    return m_Perimeter;
  }
 
  void
  SetPerimeter(const double & v)
  {
    m_Perimeter = v;
  }
 
  const double &
  GetRoundness() const
  {
    return m_Roundness;
  }
 
  void
  SetRoundness(const double & v)
  {
    m_Roundness = v;
  }
 
  const double &
  GetEquivalentSphericalRadius() const
  {
    return m_EquivalentSphericalRadius;
  }
 
  void
  SetEquivalentSphericalRadius(const double & v)
  {
    m_EquivalentSphericalRadius = v;
  }
 
  const double &
  GetEquivalentSphericalPerimeter() const
  {
    return m_EquivalentSphericalPerimeter;
  }
 
  void
  SetEquivalentSphericalPerimeter(const double & v)
  {
    m_EquivalentSphericalPerimeter = v;
  }
 
  const VectorType &
  GetEquivalentEllipsoidDiameter() const
  {
    return m_EquivalentEllipsoidDiameter;
  }
 
  void
  SetEquivalentEllipsoidDiameter(const VectorType & v)
  {
    m_EquivalentEllipsoidDiameter = v;
  }
 
  const double &
  GetFlatness() const
  {
    return m_Flatness;
  }
 
  void
  SetFlatness(const double & v)
  {
    m_Flatness = v;
  }
 
  const double &
  GetPerimeterOnBorderRatio() const
  {
    return m_PerimeterOnBorderRatio;
  }
 
  void
  SetPerimeterOnBorderRatio(const double & v)
  {
    m_PerimeterOnBorderRatio = v;
  }
 
  const OrientedBoundingBoxPointType &
  GetOrientedBoundingBoxOrigin() const
  {
    return m_OrientedBoundingBoxOrigin;
  }
 
  void
  SetOrientedBoundingBoxOrigin(const OrientedBoundingBoxPointType & v)
  {
    m_OrientedBoundingBoxOrigin = v;
  }
 
  const OrientedBoundingBoxSizeType &
  GetOrientedBoundingBoxSize() const
  {
    return m_OrientedBoundingBoxSize;
  }
 
  void
  SetOrientedBoundingBoxSize(const OrientedBoundingBoxSizeType & v)
  {
    m_OrientedBoundingBoxSize = v;
  }
 
 
  // some helper methods - not really required, but really useful!
 
  const RegionType &
  GetRegion() const
  {
    return m_BoundingBox;
  }
 
 
  const OrientedBoundingBoxDirectionType &
  GetOrientedBoundingBoxDirection() const
  {
    return this->GetPrincipalAxes();
  }
 
  OrientedBoundingBoxVerticesType
  GetOrientedBoundingBoxVertices() const
  {
    const MatrixType obbToPhysical(this->GetOrientedBoundingBoxDirection().GetTranspose());
 
 
    OrientedBoundingBoxVerticesType vertices;
 
    // Use binary index to map the vertices of the OBB to an array. For
    // example, in 2D, binary  counting will give[0,0], [0,1], [1,0],
    // [1,1], which corresponds to [minX,minY], [minX,maxY],
    // [maxX,minY], [maxX,maxY].
    for (unsigned int i = 0; i < OrientedBoundingBoxVerticesType::Length; ++i)
    {
      constexpr unsigned int         msb = 1 << (ImageDimension - 1);
      Vector<double, ImageDimension> offset;
      for (unsigned int j = 0; j < ImageDimension; ++j)
      {
        if (i & msb >> j)
        {
          offset[j] = m_OrientedBoundingBoxSize[j];
        }
        else
        {
          offset[j] = 0;
        }
      }
      vertices[i] = m_OrientedBoundingBoxOrigin + obbToPhysical * offset;
    }
    return vertices;
  }
 
  using AffineTransformType = AffineTransform<double, VImageDimension>;
  using AffineTransformPointer = typename AffineTransformType::Pointer;
 
  AffineTransformPointer
  GetPrincipalAxesToPhysicalAxesTransform() const
  {
    typename AffineTransformType::MatrixType matrix;
    typename AffineTransformType::OffsetType offset;
    for (unsigned int i = 0; i < VImageDimension; i++)
    {
      offset[i] = m_Centroid[i];
      for (unsigned int j = 0; j < VImageDimension; j++)
      {
        matrix[j][i] = m_PrincipalAxes[i][j]; // Note the transposition
      }
    }
 
    AffineTransformPointer result = AffineTransformType::New();
 
    result->SetMatrix(matrix);
    result->SetOffset(offset);
 
    return result;
  }
 
  AffineTransformPointer
  GetPhysicalAxesToPrincipalAxesTransform() const
  {
    typename AffineTransformType::MatrixType matrix;
    typename AffineTransformType::OffsetType offset;
    for (unsigned int i = 0; i < VImageDimension; i++)
    {
      offset[i] = m_Centroid[i];
      for (unsigned int j = 0; j < VImageDimension; j++)
      {
        matrix[j][i] = m_PrincipalAxes[i][j]; // Note the transposition
      }
    }
 
    AffineTransformPointer result = AffineTransformType::New();
    result->SetMatrix(matrix);
    result->SetOffset(offset);
 
    AffineTransformPointer inverse = AffineTransformType::New();
    result->GetInverse(inverse);
 
    return inverse;
  }
 
  template <typename TSourceLabelObject>
  void
  CopyAttributesFrom(const TSourceLabelObject * src)
  {
    Superclass::template CopyAttributesFrom<TSourceLabelObject>(src);
 
    m_BoundingBox = src->GetBoundingBox();
    m_NumberOfPixels = src->GetNumberOfPixels();
    m_PhysicalSize = src->GetPhysicalSize();
    m_Centroid = src->GetCentroid();
    m_NumberOfPixelsOnBorder = src->GetNumberOfPixelsOnBorder();
    m_PerimeterOnBorder = src->GetPerimeterOnBorder();
    m_FeretDiameter = src->GetFeretDiameter();
    m_PrincipalMoments = src->GetPrincipalMoments();
    m_PrincipalAxes = src->GetPrincipalAxes();
    m_Elongation = src->GetElongation();
    m_Perimeter = src->GetPerimeter();
    m_Roundness = src->GetRoundness();
    m_EquivalentSphericalRadius = src->GetEquivalentSphericalRadius();
    m_EquivalentSphericalPerimeter = src->GetEquivalentSphericalPerimeter();
    m_EquivalentEllipsoidDiameter = src->GetEquivalentEllipsoidDiameter();
    m_Flatness = src->GetFlatness();
    m_PerimeterOnBorderRatio = src->GetPerimeterOnBorderRatio();
    m_OrientedBoundingBoxOrigin = src->GetOrientedBoundingBoxOrigin();
    m_OrientedBoundingBoxSize = src->GetOrientedBoundingBoxSize();
  }
 
  template <typename TSourceLabelObject>
  void
  CopyAllFrom(const TSourceLabelObject * src)
  {
    itkAssertOrThrowMacro((src != nullptr), "Null Pointer");
    this->template CopyLinesFrom<TSourceLabelObject>(src);
    this->template CopyAttributesFrom<TSourceLabelObject>(src);
  }
 
protected:
  ShapeLabelObject()
  {
    m_NumberOfPixels = 0;
    m_PhysicalSize = 0;
    m_Centroid.Fill(0);
    m_NumberOfPixelsOnBorder = 0;
    m_PerimeterOnBorder = 0;
    m_FeretDiameter = 0;
    m_PrincipalMoments.Fill(0);
    m_PrincipalAxes.Fill(0);
    m_Elongation = 0;
    m_Perimeter = 0;
    m_Roundness = 0;
    m_EquivalentSphericalRadius = 0;
    m_EquivalentSphericalPerimeter = 0;
    m_EquivalentEllipsoidDiameter.Fill(0);
    m_Flatness = 0;
    m_PerimeterOnBorderRatio = 0;
    m_OrientedBoundingBoxSize.Fill(0);
    m_OrientedBoundingBoxOrigin.Fill(0);
  }
 
  void
  PrintSelf(std::ostream & os, Indent indent) const override
  {
    Superclass::PrintSelf(os, indent);
 
    os << indent << "NumberOfPixels: " << m_NumberOfPixels << std::endl;
    os << indent << "PhysicalSize: " << m_PhysicalSize << std::endl;
    os << indent << "Perimeter: " << m_Perimeter << std::endl;
    os << indent << "NumberOfPixelsOnBorder: " << m_NumberOfPixelsOnBorder << std::endl;
    os << indent << "PerimeterOnBorder: " << m_PerimeterOnBorder << std::endl;
    os << indent << "PerimeterOnBorderRatio: " << m_PerimeterOnBorderRatio << std::endl;
    os << indent << "Elongation: " << m_Elongation << std::endl;
    os << indent << "Flatness: " << m_Flatness << std::endl;
    os << indent << "Roundness: " << m_Roundness << std::endl;
    os << indent << "Centroid: " << m_Centroid << std::endl;
    os << indent << "BoundingBox: ";
    m_BoundingBox.Print(os, indent);
    os << indent << "EquivalentSphericalRadius: " << m_EquivalentSphericalRadius << std::endl;
    os << indent << "EquivalentSphericalPerimeter: " << m_EquivalentSphericalPerimeter << std::endl;
    os << indent << "EquivalentEllipsoidDiameter: " << m_EquivalentEllipsoidDiameter << std::endl;
    os << indent << "PrincipalMoments: " << m_PrincipalMoments << std::endl;
    os << indent << "PrincipalAxes: " << std::endl << m_PrincipalAxes;
    os << indent << "FeretDiameter: " << m_FeretDiameter << std::endl;
    os << indent << "m_OrientedBoundingBoxSize: " << m_OrientedBoundingBoxSize << std::endl;
    os << indent << "m_OrientedBoundingBoxOrigin: " << m_OrientedBoundingBoxOrigin << std::endl;
  }
 
private:
  RegionType    m_BoundingBox;
  SizeValueType m_NumberOfPixels;
  double        m_PhysicalSize;
  CentroidType  m_Centroid;
  SizeValueType m_NumberOfPixelsOnBorder;
  double        m_PerimeterOnBorder;
  double        m_FeretDiameter;
  VectorType    m_PrincipalMoments;
  MatrixType    m_PrincipalAxes;
  double        m_Elongation;
  double        m_Perimeter;
  double        m_Roundness;
  double        m_EquivalentSphericalRadius;
  double        m_EquivalentSphericalPerimeter;
  VectorType    m_EquivalentEllipsoidDiameter;
  double        m_Flatness;
  double        m_PerimeterOnBorderRatio;
 
  OrientedBoundingBoxSizeType  m_OrientedBoundingBoxSize;
  OrientedBoundingBoxPointType m_OrientedBoundingBoxOrigin;
};
} // end namespace itk
 
#endif