TubeTK/Documentation: Difference between revisions
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* [[TubeTK/Installation|Installation]] | * [[TubeTK/Installation|Installation]] | ||
* [[TubeTK/Documentation|Methods & Apps]] | * [[TubeTK/Documentation|Methods & Apps]] | ||
* [[TubeTK/Slicer|TubeTK with 3D Slicer]] | * [[TubeTK/Slicer|TubeTK with 3D Slicer]] | ||
* [[TubeTK/OsiriX|TubeTK with OsiriX]] | * [[TubeTK/OsiriX|TubeTK with OsiriX]] | ||
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<br> | <br> | ||
'''[[TubeTK/ | '''[[TubeTK/Contact|Contact Us]]''' | ||
| width="800px" align="left" | | | width="800px" align="left" | | ||
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# '''Command-line (CLI) Applications''' | # '''Command-line (CLI) Applications''' | ||
#* Command-line applications can be run directly from the command line, or graphically using 3D Slicer | #* Command-line applications can be run directly from the command line, or graphically using 3D Slicer | ||
#* [[TubeTK/HessianVesselness2D | Hessian Vesselness 2D]] | #* [[TubeTK/Documentation/AtlasBuilderUsingIntensity | AtlasBuilderUsingIntensity]] | ||
#* [[TubeTK/ExtractCurves2D | Extract Curves 2D]] | #* [[TubeTK/Documentation/ComputeBinaryImageSimilarityMetrics | ComputeBinaryImageSimilarityMetrics]] | ||
#* [[TubeTK/ComputeTortuosity | Compute Tortuosity]] | #* [[TubeTK/Documentation/ComputeImageSimilarityMetrics | ComputeImageSimilarityMetrics]] | ||
#* [[TubeTK/Sliding_Organ_Registration | Sliding Geometries Registration]] | #* [[TubeTK/Documentation/ComputeImageStatisticsUsingMask | ComputeImageStatisticsUsingMask]] | ||
#* [[TubeTK/Documentation/ComputeSegmentTubesParameters | ComputeSegmentTubesParameters]] | |||
#* [[TubeTK/Documentation/ComputeTubeGraphProbability | ComputeTubeGraphProbability]] | |||
#* [[TubeTK/Documentation/ComputeTubeMeasures | ComputeTubeMeasures]] | |||
#* [[TubeTK/Documentation/ComputeTubeProbability | ComputeTubeProbability]] | |||
#* [[TubeTK/Documentation/ConvertInnerOpticToPlus | ConvertInnerOpticToPlus]] | |||
#* [[TubeTK/Documentation/ConvertShrunkenSeedImageToList | ConvertShrunkenSeedImageToList]] | |||
#* [[TubeTK/Documentation/ConvertTRE | ConvertTRE]] | |||
#* [[TubeTK/Documentation/ConvertTubeGraphToImage | ConvertTubeGraphToImage]] | |||
#* [[TubeTK/Documentation/ConvertTubesToDensityImage | ConvertTubesToDensityImage]] | |||
#* [[TubeTK/Documentation/ConvertTubesToImage | ConvertTubesToImage]] | |||
#* [[TubeTK/Documentation/ConvertTubesToSurface | ConvertTubesToSurface]] | |||
#* [[TubeTK/Documentation/ConvertTubeToTubeGraph | ConvertTubeToTubeGraph]] | |||
#* [[TubeTK/Documentation/CropImage | CropImage]] | |||
#* [[TubeTK/Documentation/DeblendTomosynthesisSlicesUsingPrior | DeblendTomosynthesisSlicesUsingPrior]] | |||
#* [[TubeTK/Documentation/EnhanceCoherenceAndEdgesUsingDiffusion | EnhanceCoherenceAndEdgesUsingDiffusion]] | |||
#* [[TubeTK/Documentation/EnhanceCoherenceUsingDiffusion | EnhanceCoherenceUsingDiffusion]] | |||
#* [[TubeTK/Documentation/EnhanceContrastUsingPrior | EnhanceContrastUsingPrior]] | |||
#* [[TubeTK/Documentation/EnhanceEdgesUsingDiffusion | EnhanceEdgesUsingDiffusion]] | |||
#* [[TubeTK/Documentation/EnhanceTubesUsingDiffusion | EnhanceTubesUsingDiffusion]] | |||
#* [[TubeTK/Documentation/EnhanceTubesUsingDiscriminantAnalysis | EnhanceTubesUsingDiscriminantAnalysis]] | |||
#* [[TubeTK/Documentation/EnhanceUsingDiscriminantAnalysis | EnhanceUsingDiscriminantAnalysis]] | |||
#* [[TubeTK/Documentation/EnhanceUsingNJetDiscriminantAnalysis | EnhanceUsingNJetDiscriminantAnalysis]] | |||
#* [[TubeTK/Documentation/ImageCompareCommand | ImageCompareCommand]] | |||
#* [[TubeTK/Documentation/JsonCompareCommand | JsonCompareCommand]] | |||
#* [[TubeTK/Documentation/MergeAdjacentImages | MergeAdjacentImages]] | |||
#* [[TubeTK/Documentation/MergeTubeGraphs | MergeTubeGraphs]] | |||
#* [[TubeTK/Documentation/RegisterImages | RegisterImages]] | |||
#* [[TubeTK/Documentation/RegisterUsingImageCenters | RegisterUsingImageCenters]] | |||
#* [[TubeTK/Documentation/RegisterUsingSlidingGeometries | RegisterUsingSlidingGeometries]] | |||
#* [[TubeTK/Documentation/ResampleImage | ResampleImage]] | |||
#* [[TubeTK/Documentation/SampleCLIApplication | SampleCLIApplication]] | |||
#* [[TubeTK/Documentation/SegmentBinaryImageSkeleton | SegmentBinaryImageSkeleton]] | |||
#* [[TubeTK/Documentation/SegmentConnectedComponents | SegmentConnectedComponents]] | |||
#* [[TubeTK/Documentation/SegmentConnectedComponentsUsingParzenPDFs | SegmentConnectedComponentsUsingParzenPDFs]] | |||
#* [[TubeTK/Documentation/SegmentTubes | SegmentTubes]] | |||
#* [[TubeTK/Documentation/SegmentUsingOtsuThreshold | SegmentUsingOtsuThreshold]] | |||
#* [[TubeTK/Documentation/ShrinkImage | ShrinkImage]] | |||
#* [[TubeTK/Documentation/SimulateAcquisitionArtifactsUsingPrior | SimulateAcquisitionArtifactsUsingPrior]] | |||
#* [[TubeTK/Documentation/SubSampleTubes | SubSampleTubes]] | |||
#* [[TubeTK/Documentation/TextCompareCommand | TextCompareCommand]] | |||
#* [[TubeTK/Documentation/TransformTubes | TransformTubes]] | |||
#* [[TubeTK/Documentation/HessianVesselness2D | Hessian Vesselness 2D]] | |||
#* [[TubeTK/Documentation/ExtractCurves2D | Extract Curves 2D]] | |||
#* [[TubeTK/Documentation/ComputeTortuosity | Compute Tortuosity]] | |||
#* [[TubeTK/Documentation/Sliding_Organ_Registration | Sliding Geometries Registration]] | |||
# '''3D Slicer Python Applications''' | # '''3D Slicer Python Applications''' | ||
#* [[TubeTK/InteractivePDFSegmenter | Interactive PDF Segmenter]] | #* [[TubeTK/Documentation/InteractivePDFSegmenter | Interactive PDF Segmenter]] | ||
= Modules = | = Modules = | ||
# Pre-processing | # Pre-processing | ||
#* [[TubeTK/Anisotropic Hybrid Diffusion with Continuous Switch]] | #* [[TubeTK/Anisotropic Hybrid Diffusion with Continuous Switch|Anisotropic Hybrid Diffusion with Continuous Switch]] | ||
# Object segmentation | # Object segmentation | ||
# Tube extraction | # Tube extraction | ||
#* [[TubeTK/RadiusEstimationFunction|Radius Estimations Functions]] | |||
# Data structures | # Data structures | ||
# Topology analysis | # Topology analysis | ||
# Editing | # Editing | ||
# Export | # Export | ||
# [[TubeTK/OpenIGTLink | OpenIGTLink]] | # [[TubeTK/OpenIGTLink|OpenIGTLink]] | ||
# Python | # Python | ||
#* [http://nbviewer.ipython.org/5925084 Tube NumPy Array] | #* [http://nbviewer.ipython.org/5925084 Tube NumPy Array] | ||
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= Related Efforts = | = Related Efforts = | ||
* [[TubeTK/ | * [[TubeTK/Related Work|Related Work]] | ||
|} | |} | ||
[[Category:TubeTK]] | [[Category:TubeTK|Documentation]] | ||
Latest revision as of 20:36, 13 October 2015
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