itkContourExtractor2DImageFilter.h

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/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkContourExtractor2DImageFilter_h
#define itkContourExtractor2DImageFilter_h
 
#include <deque>
#include <list>
#include <unordered_map>
#include "itkConceptChecking.h"
#include "itkImageRegionIterator.h"
#include "itkImageRegionRange.h"
#include "itkImageToPathFilter.h"
#include "itkIndexRange.h"
#include "itkPolyLineParametricPath.h"
 
namespace itk
{
template <typename TInputImage>
class ITK_TEMPLATE_EXPORT ContourExtractor2DImageFilter
  : public ImageToPathFilter<TInputImage, PolyLineParametricPath<2>>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(ContourExtractor2DImageFilter);
 
  static constexpr unsigned int InputImageDimension{ TInputImage::ImageDimension };
 
  using InputImageType = TInputImage;
  using OutputPathType = PolyLineParametricPath<2>;
 
  using Self = ContourExtractor2DImageFilter;
  using Superclass = ImageToPathFilter<InputImageType, OutputPathType>;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
 
  itkNewMacro(Self);
 
  itkOverrideGetNameOfClassMacro(ContourExtractor2DImageFilter);
 
  using InputImagePointer = typename InputImageType::Pointer;
  using InputIndexType = typename InputImageType::IndexType;
  using InputSizeType = typename InputImageType::SizeType;
  using InputOffsetType = typename InputImageType::OffsetType;
  using InputPixelType = typename InputImageType::PixelType;
  using InputRegionType = typename InputImageType::RegionType;
  using OutputPathPointer = typename OutputPathType::Pointer;
  using VertexListType = typename OutputPathType::VertexListType;
  using VertexListConstPointer = typename VertexListType::ConstPointer;
  using VertexType = typename OutputPathType::VertexType;
  using VertexValueType = typename VertexType::ValueType;
 
  using InputRealType = typename NumericTraits<InputPixelType>::RealType;
 
  using RegionIndexRange = ImageRegionIndexRange<InputImageType::ImageDimension>;
  using RegionRange = ImageRegionRange<InputImageType>;
  using RegionConstRange = ImageRegionRange<const InputImageType>;
  using RegionIterator = ImageRegionIterator<InputImageType>;
  using RegionConstIterator = ImageRegionConstIterator<InputImageType>;
 
  itkSetMacro(ReverseContourOrientation, bool);
  itkGetConstReferenceMacro(ReverseContourOrientation, bool);
  itkBooleanMacro(ReverseContourOrientation);
  itkSetMacro(VertexConnectHighPixels, bool);
  itkGetConstReferenceMacro(VertexConnectHighPixels, bool);
  itkBooleanMacro(VertexConnectHighPixels);
  itkSetMacro(LabelContours, bool);
  itkGetConstReferenceMacro(LabelContours, bool);
  itkBooleanMacro(LabelContours);
  void
  SetRequestedRegion(const InputRegionType region);
 
  itkGetConstReferenceMacro(RequestedRegion, InputRegionType);
  void
  ClearRequestedRegion();
 
  itkSetMacro(ContourValue, InputRealType);
  itkGetConstReferenceMacro(ContourValue, InputRealType);
#ifdef ITK_USE_CONCEPT_CHECKING
  // Begin concept checking
  itkConceptMacro(DimensionShouldBe2, (Concept::SameDimension<Self::InputImageDimension, 2>));
  itkConceptMacro(InputPixelTypeComparable, (Concept::Comparable<InputPixelType>));
  itkConceptMacro(InputHasPixelTraitsCheck, (Concept::HasPixelTraits<InputPixelType>));
  itkConceptMacro(InputHasNumericTraitsCheck, (Concept::HasNumericTraits<InputPixelType>));
  // End concept checking
#endif
 
protected:
  ContourExtractor2DImageFilter();
  ~ContourExtractor2DImageFilter() override = default;
  void
  PrintSelf(std::ostream & os, Indent indent) const override;
 
  void
  GenerateData() override;
 
  void
  GenerateInputRequestedRegion() override;
 
private:
  using LabelsContainer = std::vector<InputPixelType>;
  using LabelsConstIterator = typename LabelsContainer::const_iterator;
  using LabelsIterator = typename LabelsContainer::iterator;
 
  InputRealType   m_ContourValue{};
  bool            m_ReverseContourOrientation{};
  bool            m_VertexConnectHighPixels{};
  bool            m_LabelContours{};
  bool            m_UseCustomRegion{};
  InputRegionType m_RequestedRegion{};
 
  // Represent each contour as deque of vertices to facilitate addition of
  // nodes at beginning or end. At the end of the processing, we will copy
  // the contour into a PolyLineParametricPath.
  // We subclass the deque to store an additional bit of information: an
  // identification number for each growing contour. We use this number so
  // that when it becomes necessary to merge two growing contours, we can
  // merge the newer one into the older one. This helps because then we can
  // guarantee that the output contour list is ordered from left to right,
  // top to bottom (in terms of the first pixel of the contour encountered
  // by the marching squares). Currently we make no guarantees that this
  // pixel is the first pixel in the contour list, just that the contours
  // are so ordered in the output. Ensuring this latter condition (first
  // pixel traversed = first pixel in contour) would be possible by either
  // changing the merging rules, which would make the contouring operation
  // slower, or by storing additional data as to which pixel was first.
  class ContourType : public std::deque<VertexType>
  {
  public:
    unsigned int m_ContourNumber;
  };
 
  // Store all the growing contours in a list. We may need to delete contours
  // from anywhere in the sequence (when we merge them together), so we need to
  // use a list instead of a vector or similar.
  using ContourConstIterator = typename ContourType::const_iterator;
  using ContourContainerType = std::list<ContourType>;
  using ContourContainerIterator = typename ContourContainerType::iterator;
  using ContourContainerConstIterator = typename ContourContainerType::const_iterator;
 
  // We use a hash to associate the endpoints of each contour with the
  // contour itself. This makes it easy to look up which contour we should add
  // a new arc to.
 
  // We can't store the contours themselves in the hashtable because we
  // need to have two tables (one to hash from beginpoint -> contour and one
  // for endpoint -> contour), and sometimes will remove a contour from the
  // tables (if it has been closed or merged with another contour). Because
  // sometimes we will need to merge contours, we need to be able to quickly
  // remove contours from our list when they have been merged into
  // another. Thus, we store an iterator pointing to the contour in the list.
 
  struct VertexHash
  {
    using CoordinateType = typename VertexType::CoordRepType;
    inline size_t
    operator()(const VertexType & v) const noexcept
    {
      return std::hash<CoordinateType>{}(v[0]) ^ (std::hash<CoordinateType>{}(v[1]) << 1);
    }
  };
  using VertexToContourContainerIteratorMap = std::unordered_map<VertexType, ContourContainerIterator, VertexHash>;
  using VertexToContourContainerIteratorMapIterator = typename VertexToContourContainerIteratorMap::iterator;
  using VertexToContourContainerIteratorMapConstIterator = typename VertexToContourContainerIteratorMap::const_iterator;
  using VertexToContourContainerIteratorMapKeyValuePair = typename VertexToContourContainerIteratorMap::value_type;
 
  // Subroutine to create contours for a single label.
  void
  CreateSingleContour(InputPixelType         label,
                      const InputImageType * input,
                      const InputRegionType  extendedRegion,
                      SizeValueType          totalNumberOfPixels,
                      ContourContainerType & contoursOutput);
 
  // Subroutine to handle the case that the supplied values are
  // labels, which are *not* compared to a contour value.
  void
  GenerateDataForLabels();
 
  VertexType
  InterpolateContourPosition(InputPixelType  fromValue,
                             InputPixelType  toValue,
                             InputIndexType  fromIndex,
                             InputOffsetType toOffset);
 
  struct ContourData
  {
    ContourContainerType                m_Contours;
    VertexToContourContainerIteratorMap m_ContourStarts;
    VertexToContourContainerIteratorMap m_ContourEnds;
    SizeValueType                       m_NumberOfContoursCreated = 0;
  };
 
  void
  AddSegment(const VertexType from, const VertexType to, ContourData & contourData);
 
  void
  FillOutputs(const std::vector<InputPixelType> &                        allLabels,
              std::unordered_map<InputPixelType, ContourContainerType> & labelsContoursOutput);
 
  InputPixelType m_UnusedLabel{};
};
} // end namespace itk
 
#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkContourExtractor2DImageFilter.hxx"
#endif
 
#endif