LevelSet function that computes a speed image based on regional integrals. More...

#include <itkScalarRegionBasedLevelSetFunction.h>

Inheritance diagram for itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >:

Collaboration diagram for itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >:

Public Types
typedef ImageRegionConstIterator < FeatureImageType >	ConstFeatureIteratorType
typedef ImageRegionConstIteratorWithIndex < InputImageType >	ConstImageIteratorType
typedef SmartPointer< const Self >	ConstPointer
typedef ZeroFluxNeumannBoundaryCondition < ImageType >	DefaultBoundaryConditionType
typedef FeatureImageType::ConstPointer	FeatureImageConstPointer
typedef ImageRegionIteratorWithIndex < FeatureImageType >	FeatureImageIteratorType
typedef Superclass::FeatureImageType	FeatureImageType
typedef Superclass::FeatureIndexType	FeatureIndexType
typedef Superclass::FeatureOffsetType	FeatureOffsetType
typedef Superclass::FeaturePixelType	FeaturePixelType
typedef FeatureImageType::SpacingType	FeatureSpacingType
typedef Superclass::FloatOffsetType	FloatOffsetType
typedef Superclass::GlobalDataStruct	GlobalDataStruct
typedef HeavisideFunctionType::ConstPointer	HeavisideFunctionConstPointer
typedef HeavisideStepFunctionBase < InputPixelType, InputPixelType >	HeavisideFunctionType
typedef ImageRegionIteratorWithIndex < InputImageType >	ImageIteratorType
typedef Superclass::ImageType	ImageType
typedef Superclass::InputImageConstPointer	InputImageConstPointer
typedef Superclass::InputImagePointer	InputImagePointer
typedef Superclass::InputImageType	InputImageType
typedef Superclass::InputIndexType	InputIndexType
typedef Superclass::InputIndexValueType	InputIndexValueType
typedef Superclass::InputPixelType	InputPixelType
typedef Superclass::InputPointType	InputPointType
typedef Superclass::InputRegionType	InputRegionType
typedef Superclass::InputSizeType	InputSizeType
typedef Superclass::InputSizeValueType	InputSizeValueType
typedef Image< ListPixelType, itkGetStaticConstMacro(ImageDimension) >	ListImageType
typedef ListPixelType::const_iterator	ListPixelConstIterator
typedef ListPixelType::iterator	ListPixelIterator
typedef std::list< unsigned int >	ListPixelType
typedef Superclass::NeighborhoodScalesType	NeighborhoodScalesType
typedef Superclass::NeighborhoodType	NeighborhoodType
typedef double	PixelRealType
typedef Superclass::PixelType	PixelType
typedef SmartPointer< Self >	Pointer
typedef Superclass::RadiusType	RadiusType
typedef Superclass::ScalarValueType	ScalarValueType
typedef ScalarRegionBasedLevelSetFunction	Self
typedef Superclass::SharedDataPointer	SharedDataPointer
typedef Superclass::SharedDataType	SharedDataType
typedef RegionBasedLevelSetFunction < TInputImage, TFeatureImage, TSharedData >	Superclass
typedef Superclass::TimeStepType	TimeStepType
typedef Superclass::VectorType	VectorType
Public Member Functions
virtual VectorType	AdvectionField (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const
virtual void	CalculateAdvectionImage ()
virtual ScalarValueType	ComputeCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd)
TimeStepType	ComputeGlobalTimeStep (void *GlobalData) const
const NeighborhoodScalesType	ComputeNeighborhoodScales () const
virtual PixelType	ComputeUpdate (const NeighborhoodType &neighborhood, void *globalData, const FloatOffsetType &=FloatOffsetType(0.0))
virtual Pointer	CreateAnother () const
virtual ScalarValueType	CurvatureSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const
virtual void	Delete ()
ScalarValueType	GetAdvectionWeight () const
virtual const FeatureImageType *	GetFeatureImage () const
void *	GetGlobalDataPointer () const
virtual const char *	GetNameOfClass () const
const RadiusType &	GetRadius () const
virtual int	GetReferenceCount () const
virtual void	Initialize (const RadiusType &r)
virtual void	InitializeIteration ()
virtual ScalarValueType	LaplacianSmoothingSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Register () const
virtual void	ReleaseGlobalDataPointer (void *GlobalData) const
void	SetAdvectionWeight (const ScalarValueType &iA)
void	SetDomainFunction (const HeavisideFunctionType *f)
virtual void	SetFeatureImage (const FeatureImageType *f)
void	SetFunctionId (const unsigned int &iFid)
void	SetInitialImage (InputImageType *f)
void	SetRadius (const RadiusType &r)
virtual void	SetReferenceCount (int)
void	SetSharedData (SharedDataPointer sharedDataIn)
virtual void	UnRegister () const
void	UpdatePixel (const unsigned int &idx, NeighborhoodIterator< TInputImage > &iterator, InputPixelType &newValue, bool &status)
void	UpdateSharedData (bool forceUpdate)


void	SetAreaWeight (const ScalarValueType &nu)
ScalarValueType	GetAreaWeight () const


void	SetLambda1 (const ScalarValueType &lambda1)
ScalarValueType	GetLambda1 () const


void	SetLambda2 (const ScalarValueType &lambda2)
ScalarValueType	GetLambda2 () const


void	SetOverlapPenaltyWeight (const ScalarValueType &gamma)
ScalarValueType	GetOverlapPenaltyWeight () const


virtual void	SetCurvatureWeight (const ScalarValueType c)
ScalarValueType	GetCurvatureWeight () const


void	SetReinitializationSmoothingWeight (const ScalarValueType c)
ScalarValueType	GetReinitializationSmoothingWeight () const


void	SetVolumeMatchingWeight (const ScalarValueType &tau)
ScalarValueType	GetVolumeMatchingWeight () const


void	SetVolume (const ScalarValueType &volume)
ScalarValueType	GetVolume () const


void	SetScaleCoefficients (PixelRealType vals[ImageDimension])
Static Public Member Functions
static void	BreakOnError ()
static Pointer	New ()
Static Public Attributes
static const unsigned int	ImageDimension = TFeatureImage::ImageDimension
Protected Types


typedef int	InternalReferenceCountType
Protected Member Functions
virtual ScalarValueType	ComputeExternalTerm (const FeaturePixelType &iValue, const FeatureIndexType &iIdx)=0
ScalarValueType	ComputeGlobalTerm (const ScalarValueType &imagePixel, const InputIndexType &inputIndex)
void	ComputeHessian (const NeighborhoodType &it, GlobalDataStruct *globalData)
void	ComputeHImage ()
virtual ScalarValueType	ComputeInternalTerm (const FeaturePixelType &iValue, const FeatureIndexType &iIdx)=0
ScalarValueType	ComputeLaplacian (GlobalDataStruct *gd)
virtual ScalarValueType	ComputeOverlapParameters (const FeatureIndexType &featIndex, ScalarValueType &pr)=0
ScalarValueType	ComputeOverlapParameters (const FeatureIndexType &featIndex, ScalarValueType &product)
virtual void	ComputeParameters ()=0
ScalarValueType	ComputeVolumeRegularizationTerm ()
void	PrintSelf (std::ostream &os, Indent indent) const
	ScalarRegionBasedLevelSetFunction ()
virtual void	UpdateSharedDataInsideParameters (const unsigned int &iId, const FeaturePixelType &iVal, const ScalarValueType &iChange)=0
virtual void	UpdateSharedDataOutsideParameters (const unsigned int &iId, const FeaturePixelType &iVal, const ScalarValueType &iChange)=0
virtual void	UpdateSharedDataParameters ()=0
	~ScalarRegionBasedLevelSetFunction ()


virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
Static Protected Member Functions
static VectorType	InitializeZeroVectorConstant ()
Protected Attributes
ScalarValueType	m_AdvectionWeight
ScalarValueType	m_AreaWeight
::vcl_size_t	m_Center
ScalarValueType	m_CurvatureWeight
HeavisideFunctionConstPointer	m_DomainFunction
FeatureImageConstPointer	m_FeatureImage
unsigned int	m_FunctionId
InputImageConstPointer	m_InitialImage
double	m_InvSpacing [itkGetStaticConstMacro(ImageDimension)]
ScalarValueType	m_Lambda1
ScalarValueType	m_Lambda2
ScalarValueType	m_OverlapPenaltyWeight
RadiusType	m_Radius
InternalReferenceCountType	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock
ScalarValueType	m_ReinitializationSmoothingWeight
PixelRealType	m_ScaleCoefficients [ImageDimension]
SharedDataPointer	m_SharedData
bool	m_UpdateC
ScalarValueType	m_Volume
ScalarValueType	m_VolumeMatchingWeight
::vcl_size_t	m_xStride [itkGetStaticConstMacro(ImageDimension)]
std::slice	x_slice [itkGetStaticConstMacro(ImageDimension)]
Static Protected Attributes
static double	m_DT
static double	m_WaveDT
static VectorType	m_ZeroVectorConstant

Detailed Description

template<class TInputImage, class TFeatureImage, class TSharedData>
class itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >

LevelSet function that computes a speed image based on regional integrals.

This class implements a level set function that computes the speed image by integrating values on the image domain. NOTE: The convention followed is inside of the level-set function is negative and outside is positive.

Based on the paper:

"An active contour model without edges" T. Chan and L. Vese. In Scale-Space Theories in Computer Vision, pages 141–151, 1999.

Author:: Mosaliganti K., Smith B., Gelas A., Gouaillard A., Megason S.

This code was taken from the Insight Journal paper:

"Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes" http://www.insight-journal.org/browse/publication/642 http://hdl.handle.net/10380/3055

That is based on the papers:

"Level Set Segmentation: Active Contours without edge" http://www.insight-journal.org/browse/publication/322 http://hdl.handle.net/1926/1532

and

"Level set segmentation using coupled active surfaces" http://www.insight-journal.org/browse/publication/323 http://hdl.handle.net/1926/1533

Definition at line 66 of file itkScalarRegionBasedLevelSetFunction.h.

Member Typedef Documentation

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef ImageRegionConstIterator< FeatureImageType > itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ConstFeatureIteratorType

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 115 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef ImageRegionConstIteratorWithIndex< InputImageType > itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ConstImageIteratorType

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 113 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef SmartPointer<const Self> itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ConstPointer

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 74 of file itkScalarRegionBasedLevelSetFunction.h.

typedef ZeroFluxNeumannBoundaryCondition<ImageType> itk::FiniteDifferenceFunction< TInputImage >::DefaultBoundaryConditionType [inherited]

The default boundary condition for finite difference functions that is used unless overridden in the Evaluate() method.

Definition at line 92 of file itkFiniteDifferenceFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef FeatureImageType::ConstPointer itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::FeatureImageConstPointer

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 95 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef ImageRegionIteratorWithIndex< FeatureImageType > itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::FeatureImageIteratorType

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 114 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::FeatureImageType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::FeatureImageType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 94 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::FeatureIndexType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::FeatureIndexType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 97 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::FeatureOffsetType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::FeatureOffsetType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 98 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::FeaturePixelType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::FeaturePixelType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 96 of file itkScalarRegionBasedLevelSetFunction.h.

typedef FeatureImageType::SpacingType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::FeatureSpacingType [inherited]

Definition at line 143 of file itkRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::FloatOffsetType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::FloatOffsetType

A floating point offset from an image grid location. Used for interpolation among grid values in a neighborhood.

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 102 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::GlobalDataStruct itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::GlobalDataStruct

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 105 of file itkScalarRegionBasedLevelSetFunction.h.

typedef HeavisideFunctionType::ConstPointer itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::HeavisideFunctionConstPointer [inherited]

Definition at line 150 of file itkRegionBasedLevelSetFunction.h.

typedef HeavisideStepFunctionBase< InputPixelType, InputPixelType > itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::HeavisideFunctionType [inherited]

Definition at line 149 of file itkRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef ImageRegionIteratorWithIndex< InputImageType > itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ImageIteratorType

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 112 of file itkScalarRegionBasedLevelSetFunction.h.

typedef Superclass::ImageType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ImageType [inherited]

Extract some parameters from the image type

Reimplemented from itk::FiniteDifferenceFunction< TInputImage >.

Definition at line 85 of file itkRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::InputImageConstPointer itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputImageConstPointer

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 84 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::InputImagePointer itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputImagePointer

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 85 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::InputImageType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputImageType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 83 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::InputIndexType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputIndexType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 87 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::InputIndexValueType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputIndexValueType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 88 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::InputPixelType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputPixelType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 86 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::InputPointType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputPointType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 92 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::InputRegionType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputRegionType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 91 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::InputSizeType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputSizeType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 89 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::InputSizeValueType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::InputSizeValueType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 90 of file itkScalarRegionBasedLevelSetFunction.h.

typedef int itk::LightObject::InternalReferenceCountType [protected, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 139 of file itkLightObject.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Image< ListPixelType, itkGetStaticConstMacro(ImageDimension) > itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ListImageType

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 121 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef ListPixelType::const_iterator itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ListPixelConstIterator

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 118 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef ListPixelType::iterator itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ListPixelIterator

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 119 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef std::list< unsigned int > itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ListPixelType

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 117 of file itkScalarRegionBasedLevelSetFunction.h.

typedef Superclass::NeighborhoodScalesType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::NeighborhoodScalesType [inherited]

The type of data structure that holds the scales with which the neighborhood is weighted to properly account for spacing and neighborhood radius.

Reimplemented from itk::FiniteDifferenceFunction< TInputImage >.

Definition at line 90 of file itkRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::NeighborhoodType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::NeighborhoodType

The type of data structure that is passed to this function object to evaluate at a pixel that does not lie on a data set boundary.

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 101 of file itkScalarRegionBasedLevelSetFunction.h.

typedef double itk::FiniteDifferenceFunction< TInputImage >::PixelRealType [inherited]

Definition at line 81 of file itkFiniteDifferenceFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::PixelType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::PixelType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 106 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef SmartPointer<Self> itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::Pointer

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 73 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::RadiusType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::RadiusType

Neighborhood radius type

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 103 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::ScalarValueType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ScalarValueType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 100 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef ScalarRegionBasedLevelSetFunction itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::Self

Standard class typedefs.

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 70 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::SharedDataPointer itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::SharedDataPointer

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 110 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::SharedDataType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::SharedDataType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 109 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData > itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::Superclass

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 72 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::TimeStepType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::TimeStepType

Extract some parameters from the superclass.

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 104 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

typedef Superclass::VectorType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::VectorType

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 107 of file itkScalarRegionBasedLevelSetFunction.h.

Constructor & Destructor Documentation

template<class TInputImage , class TFeatureImage , class TSharedData >

itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ScalarRegionBasedLevelSetFunction ( ) [inline, protected]

Definition at line 133 of file itkScalarRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::~ScalarRegionBasedLevelSetFunction ( ) [inline, protected]

Definition at line 134 of file itkScalarRegionBasedLevelSetFunction.h.

Member Function Documentation

virtual VectorType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::AdvectionField	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	= `0`
	)			const `[inline, virtual, inherited]`

Advection field. Default implementation returns a vector of zeros.

Definition at line 213 of file itkRegionBasedLevelSetFunction.h.

static void itk::LightObject::BreakOnError ( ) [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

virtual void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::CalculateAdvectionImage ( ) [inline, virtual, inherited]

This method must be defined in a subclass to implement a working function object. This method is called before the solver begins its work to produce the speed image used as the level set function's Advection field term. See LevelSetFunction for more information.

Definition at line 306 of file itkRegionBasedLevelSetFunction.h.

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeCurvature	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	gd
	)			`[virtual, inherited]`

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeExternalTerm	(	const FeaturePixelType &	iValue,
		const FeatureIndexType &	iIdx
	)			`[protected, pure virtual, inherited]`

Compute the external term.

Parameters:

`[in]`	iValue	Feature Image Value
`[in]`	iIdx	Feature Image Index
`[in]`	pr	Product of Heaviside Functions

Note:: after discussion with kishore, pr is not and unsigned int

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeGlobalTerm	(	const ScalarValueType &	imagePixel,
		const InputIndexType &	inputIndex
	)			`[protected, inherited]`

Compute the global term as a combination of the internal, external, overlapping and volume regularization terms.

TimeStepType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeGlobalTimeStep ( void * GlobalData ) const [virtual, inherited]

Computes the time step for an update given a global data structure. The data used in the computation may take different forms depending on the nature of the equations. This global data cannot be kept in the instance of the equation object itself since the equation object must remain stateless for thread safety. The global data is therefore managed for each thread by the finite difference solver filters.

Implements itk::FiniteDifferenceFunction< TInputImage >.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeHessian	(	const NeighborhoodType &	it,
		GlobalDataStruct *	globalData
	)			`[protected, inherited]`

Compute Hessian Matrix.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeHImage ( ) [protected, inherited]

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeInternalTerm	(	const FeaturePixelType &	iValue,
		const FeatureIndexType &	iIdx
	)			`[protected, pure virtual, inherited]`

Compute the internal term.

Parameters:

`[in]`	iValue	Feature Image Value
`[in]`	iIdx	Feature Image Index
`[in]`	fId	Index of the LevelSet Function

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeLaplacian ( GlobalDataStruct * gd ) [protected, inherited]

Compute the laplacian term.

Returns:

$\Delta \phi - \div(\frac{\nabla \phi}{|\nabla \phi|})$

For details see
  @inproceedings{bb30335,
  AUTHOR = "Li, C.M. and Xu, C.Y. and Gui, C. and Fox, M.D.",
  TITLE = "Level Set Evolution without Re-Initialization: A New Variational Formulation",
  BOOKTITLE = CVPR05,
  YEAR = "2005",
  PAGES = "I: 430-436"}

Compute the laplacian

$\Delta \phi$

const NeighborhoodScalesType itk::FiniteDifferenceFunction< TInputImage >::ComputeNeighborhoodScales ( ) const [inherited]

Compute the scales that weight the neighborhood during difference operations to properly account for spacing and neighborhood radius

template<class TInputImage , class TFeatureImage , class TSharedData >

ScalarValueType itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ComputeOverlapParameters	(	const FeatureIndexType &	featIndex,
		ScalarValueType &	product
	)			`[protected]`

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeOverlapParameters	(	const FeatureIndexType &	featIndex,
		ScalarValueType &	pr
	)			`[protected, pure virtual, inherited]`

Compute the overlap term.

Parameters:

`[in]`	featIndex
`[out]`	pr	= $\prod_{i \neq j} H(\phi_i)$

Returns:: OverlapTerm = $\sum_{i \neq j} H(\phi_i)$

virtual void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeParameters ( ) [protected, pure virtual, inherited]

Compute Parameters for the inner and outer parts.

Implemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

virtual PixelType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeUpdate	(	const NeighborhoodType &	neighborhood,
		void *	globalData,
		const FloatOffsetType &	= `FloatOffsetType(0.0)`
	)			`[virtual, inherited]`

Compute the equation value.

Implements itk::FiniteDifferenceFunction< TInputImage >.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ComputeVolumeRegularizationTerm ( ) [protected, inherited]

Compute the overlap term.

Returns:: $\int_{p \in \Omega} H(\phi_i) dp - this->Volume$

Note:: the volume regularization does not depend on the spacing. So the volume must be set in number of pixels (not in real world unit).

virtual Pointer itk::LightObject::CreateAnother ( ) const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::CurvatureSpeed	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	= `0`
	)			const `[inline, virtual, inherited]`

Curvature speed can be used to spatially modify the effects of curvature . The default implementation returns one.

Definition at line 297 of file itkRegionBasedLevelSetFunction.h.

virtual void itk::LightObject::Delete ( ) [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetAdvectionWeight ( ) const [inline, inherited]

Definition at line 254 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetAreaWeight ( ) const [inline, inherited]

Nu. Area regularization values

Definition at line 220 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetCurvatureWeight ( ) const [inline, inherited]

Gamma. Scales all curvature weight values

Definition at line 248 of file itkRegionBasedLevelSetFunction.h.

virtual const FeatureImageType* itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetFeatureImage ( ) const [inline, virtual, inherited]

Definition at line 199 of file itkRegionBasedLevelSetFunction.h.

void* itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetGlobalDataPointer ( ) const [inline, virtual, inherited]

Returns a pointer to a global data structure that is passed to this object from the solver at each calculation. The idea is that the solver holds the state of any global values needed to calculate the time step, while the equation object performs the actual calculations.

The global data should also be initialized in this method.

Implements itk::FiniteDifferenceFunction< TInputImage >.

Definition at line 183 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetLambda1 ( ) const [inline, inherited]

Lambda1. Internal intensity difference weight

Definition at line 227 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetLambda2 ( ) const [inline, inherited]

Lambda2. External intensity difference weight

Definition at line 234 of file itkRegionBasedLevelSetFunction.h.

template<class TInputImage , class TFeatureImage , class TSharedData >

virtual const char* itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::GetNameOfClass ( ) const [virtual]

Run-time type information (and related methods)

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetOverlapPenaltyWeight ( ) const [inline, inherited]

Gamma. Overlap penalty

Definition at line 241 of file itkRegionBasedLevelSetFunction.h.

const RadiusType& itk::FiniteDifferenceFunction< TInputImage >::GetRadius ( void ) const [inline, inherited]

Returns the radius of the neighborhood this FiniteDifferenceFunction needs to perform its calculations.

Definition at line 146 of file itkFiniteDifferenceFunction.h.

virtual int itk::LightObject::GetReferenceCount ( ) const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 106 of file itkLightObject.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetReinitializationSmoothingWeight ( ) const [inline, inherited]

Weight of the laplacian smoothing term

Definition at line 260 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetVolume ( ) const [inline, inherited]

Pixel Volume = Number of pixels inside the level-set

Definition at line 274 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::GetVolumeMatchingWeight ( ) const [inline, inherited]

Volume matching weight.

Definition at line 267 of file itkRegionBasedLevelSetFunction.h.

virtual void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::Initialize ( const RadiusType & r ) [inline, virtual, inherited]

Definition at line 157 of file itkRegionBasedLevelSetFunction.h.

References itk::Neighborhood< TPixel, VDimension, TAllocator >::GetStride(), HardConnectedComponentImageFilter::ImageDimension, itk::Neighborhood< TPixel, VDimension, TAllocator >::SetRadius(), and itk::Neighborhood< TPixel, VDimension, TAllocator >::Size().

virtual void itk::FiniteDifferenceFunction< TInputImage >::InitializeIteration ( ) [inline, virtual, inherited]

This method allows the function to set its state before each iteration of the finite difference solver (image filter) that uses it. This is a thread-safe time to manipulate the object's state.

An example of how this can be used: the Anisotropic diffusion class of FiniteDifferenceFunctions use this method to pre-calculate an average gradient magnitude across the entire image region. This value is set in the function object and used by the ComputeUpdate methods that are called at each pixel as a constant.

Definition at line 118 of file itkFiniteDifferenceFunction.h.

static VectorType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::InitializeZeroVectorConstant ( ) [static, protected, inherited]

This method's only purpose is to initialize the zero vector constant.

virtual ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::LaplacianSmoothingSpeed	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	= `0`
	)			const `[inline, virtual, inherited]`

Laplacian smoothing speed can be used to spatially modify the effects of laplacian smoothing of the level set function.

Definition at line 290 of file itkRegionBasedLevelSetFunction.h.

static Pointer itk::LightObject::New ( ) [static, inherited]

Method for creation through the object factory.

Referenced by itk::RegionBasedLevelSetFunctionSharedData< TInputImage, TFeatureImage, TSingleData >::SetFunctionCount().

void itk::LightObject::Print	(	std::ostream &	os,
		Indent	indent = `0`
	)			const `[inherited]`

Cause the object to print itself out.

Referenced by itk::WeakPointer< ProcessObject >::Print().

virtual void itk::LightObject::PrintHeader	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual, inherited]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

void itk::FiniteDifferenceFunction< TInputImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual, inherited]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::LightObject.

virtual void itk::LightObject::PrintTrailer	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual, inherited]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

virtual void itk::LightObject::Register ( ) const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented in itk::Object.

virtual void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::ReleaseGlobalDataPointer ( void * GlobalData ) const [inline, virtual, inherited]

When the finite difference solver filter has finished using a global data pointer, it passes it to this method, which frees the memory.

The solver cannot free the memory because it does not know the type to which the pointer points.

Implements itk::FiniteDifferenceFunction< TInputImage >.

Definition at line 282 of file itkRegionBasedLevelSetFunction.h.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetAdvectionWeight ( const ScalarValueType & iA ) [inline, inherited]

Definition at line 252 of file itkRegionBasedLevelSetFunction.h.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetAreaWeight ( const ScalarValueType & nu ) [inline, inherited]

Nu. Area regularization values

Definition at line 218 of file itkRegionBasedLevelSetFunction.h.

virtual void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetCurvatureWeight ( const ScalarValueType c ) [inline, virtual, inherited]

Gamma. Scales all curvature weight values

Definition at line 246 of file itkRegionBasedLevelSetFunction.h.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetDomainFunction ( const HeavisideFunctionType * f ) [inline, inherited]

Definition at line 152 of file itkRegionBasedLevelSetFunction.h.

virtual void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetFeatureImage ( const FeatureImageType * f ) [inline, virtual, inherited]

Definition at line 201 of file itkRegionBasedLevelSetFunction.h.

References HardConnectedComponentImageFilter::ImageDimension.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetFunctionId ( const unsigned int & iFid ) [inline, inherited]

Set function id.

Definition at line 279 of file itkRegionBasedLevelSetFunction.h.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetInitialImage ( InputImageType * f ) [inline, inherited]

Definition at line 194 of file itkRegionBasedLevelSetFunction.h.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetLambda1 ( const ScalarValueType & lambda1 ) [inline, inherited]

Lambda1. Internal intensity difference weight

Definition at line 225 of file itkRegionBasedLevelSetFunction.h.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetLambda2 ( const ScalarValueType & lambda2 ) [inline, inherited]

Lambda2. External intensity difference weight

Definition at line 232 of file itkRegionBasedLevelSetFunction.h.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetOverlapPenaltyWeight ( const ScalarValueType & gamma ) [inline, inherited]

Gamma. Overlap penalty

Definition at line 239 of file itkRegionBasedLevelSetFunction.h.

void itk::FiniteDifferenceFunction< TInputImage >::SetRadius ( const RadiusType & r ) [inline, inherited]

Sets the radius of the neighborhood this FiniteDifferenceFunction needs to perform its calculations.

Definition at line 141 of file itkFiniteDifferenceFunction.h.

virtual void itk::LightObject::SetReferenceCount ( int ) [virtual, inherited]

Sets the reference count on this object. This is a dangerous method, use it with care.

Reimplemented in itk::Object.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetReinitializationSmoothingWeight ( const ScalarValueType c ) [inline, inherited]

Weight of the laplacian smoothing term

Definition at line 258 of file itkRegionBasedLevelSetFunction.h.

void itk::FiniteDifferenceFunction< TInputImage >::SetScaleCoefficients ( PixelRealType vals[ImageDimension] ) [inline, inherited]

Set the ScaleCoefficients for the difference operators. The defaults a 1.0. These can be set to take the image spacing into account.

Definition at line 152 of file itkFiniteDifferenceFunction.h.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetSharedData ( SharedDataPointer sharedDataIn ) [inline, inherited]

Definition at line 176 of file itkRegionBasedLevelSetFunction.h.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetVolume ( const ScalarValueType & volume ) [inline, inherited]

Pixel Volume = Number of pixels inside the level-set

Definition at line 272 of file itkRegionBasedLevelSetFunction.h.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::SetVolumeMatchingWeight ( const ScalarValueType & tau ) [inline, inherited]

Volume matching weight.

Definition at line 265 of file itkRegionBasedLevelSetFunction.h.

virtual void itk::LightObject::UnRegister ( ) const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented in itk::Object.

template<class TInputImage , class TFeatureImage , class TSharedData >

void itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::UpdatePixel	(	const unsigned int &	idx,
		NeighborhoodIterator< TInputImage > &	iterator,
		InputPixelType &	newValue,
		bool &	status
	)

Performs the narrow-band update of the Heaviside function for each voxel. The characteristic function of each region is recomputed (note the shared data which contains information from the other level sets). Using the new H values, the previous c_i are updated.

void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::UpdateSharedData ( bool forceUpdate ) [inherited]

template<class TInputImage , class TFeatureImage , class TSharedData >

virtual void itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::UpdateSharedDataInsideParameters	(	const unsigned int &	iId,
		const FeaturePixelType &	iVal,
		const ScalarValueType &	iChange
	)			`[protected, pure virtual]`

template<class TInputImage , class TFeatureImage , class TSharedData >

virtual void itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::UpdateSharedDataOutsideParameters	(	const unsigned int &	iId,
		const FeaturePixelType &	iVal,
		const ScalarValueType &	iChange
	)			`[protected, pure virtual]`

virtual void itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::UpdateSharedDataParameters ( ) [protected, pure virtual, inherited]

Update and save the inner and outer parameters in the shared data structure.

Implemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Member Data Documentation

template<class TInputImage , class TFeatureImage , class TSharedData >

const unsigned int itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >::ImageDimension = TFeatureImage::ImageDimension [static]

Save image dimension.

Reimplemented from itk::RegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Reimplemented in itk::ScalarChanAndVeseLevelSetFunction< TInputImage, TFeatureImage, TSharedData >.

Definition at line 81 of file itkScalarRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_AdvectionWeight [protected, inherited]

Definition at line 343 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_AreaWeight [protected, inherited]

Area regularization weight

Definition at line 323 of file itkRegionBasedLevelSetFunction.h.

::vcl_size_t itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_Center [protected, inherited]

Definition at line 351 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_CurvatureWeight [protected, inherited]

Curvature Regularization Weight

Definition at line 341 of file itkRegionBasedLevelSetFunction.h.

HeavisideFunctionConstPointer itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_DomainFunction [protected, inherited]

Definition at line 320 of file itkRegionBasedLevelSetFunction.h.

double itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_DT [static, protected, inherited]

Definition at line 356 of file itkRegionBasedLevelSetFunction.h.

FeatureImageConstPointer itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_FeatureImage [protected, inherited]

The feature image

Definition at line 317 of file itkRegionBasedLevelSetFunction.h.

unsigned int itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_FunctionId [protected, inherited]

Definition at line 348 of file itkRegionBasedLevelSetFunction.h.

InputImageConstPointer itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_InitialImage [protected, inherited]

The initial level set image

Definition at line 314 of file itkRegionBasedLevelSetFunction.h.

double itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_InvSpacing[itkGetStaticConstMacro(ImageDimension)] [protected, inherited]

Definition at line 353 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_Lambda1 [protected, inherited]

Internal functional of the level set weight

Definition at line 326 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_Lambda2 [protected, inherited]

External functional of the level set weight

Definition at line 329 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_OverlapPenaltyWeight [protected, inherited]

Overlap Penalty Weight

Definition at line 332 of file itkRegionBasedLevelSetFunction.h.

RadiusType itk::FiniteDifferenceFunction< TInputImage >::m_Radius [protected, inherited]

Definition at line 203 of file itkFiniteDifferenceFunction.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount [mutable, protected, inherited]

Number of uses of this object by other objects.

Definition at line 144 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited]

Mutex lock to protect modification to the reference count

Definition at line 147 of file itkLightObject.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_ReinitializationSmoothingWeight [protected, inherited]

Laplacian Regularization Weight

Definition at line 346 of file itkRegionBasedLevelSetFunction.h.

PixelRealType itk::FiniteDifferenceFunction< TInputImage >::m_ScaleCoefficients[ImageDimension] [protected, inherited]

Definition at line 204 of file itkFiniteDifferenceFunction.h.

SharedDataPointer itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_SharedData [protected, inherited]

Definition at line 319 of file itkRegionBasedLevelSetFunction.h.

bool itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_UpdateC [protected, inherited]

Definition at line 420 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_Volume [protected, inherited]

Volume Constraint in pixels

Definition at line 338 of file itkRegionBasedLevelSetFunction.h.

ScalarValueType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_VolumeMatchingWeight [protected, inherited]

Volume Regularization Weight

Definition at line 335 of file itkRegionBasedLevelSetFunction.h.

double itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_WaveDT [static, protected, inherited]

Definition at line 355 of file itkRegionBasedLevelSetFunction.h.

::vcl_size_t itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_xStride[itkGetStaticConstMacro(ImageDimension)] [protected, inherited]

Definition at line 352 of file itkRegionBasedLevelSetFunction.h.

VectorType itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::m_ZeroVectorConstant [static, protected, inherited]

Zero vector constant.

Definition at line 427 of file itkRegionBasedLevelSetFunction.h.

std::slice itk::RegionBasedLevelSetFunction< TInputImage , TFeatureImage , TSharedData >::x_slice[itkGetStaticConstMacro(ImageDimension)] [protected, inherited]

Definition at line 350 of file itkRegionBasedLevelSetFunction.h.

The documentation for this class was generated from the following file:

itkScalarRegionBasedLevelSetFunction.h

itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData > Class Template Reference

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Types

Protected Member Functions

Static Protected Member Functions

Protected Attributes

Static Protected Attributes

Detailed Description

template<class TInputImage, class TFeatureImage, class TSharedData> class itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class TInputImage, class TFeatureImage, class TSharedData>
class itk::ScalarRegionBasedLevelSetFunction< TInputImage, TFeatureImage, TSharedData >