ITK  5.3.0
Insight Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Protected Attributes | Private Attributes | List of all members
itk::ImageFileReader< TOutputImage, ConvertPixelTraits > Class Template Reference

#include <itkImageFileReader.h>

+ Inheritance diagram for itk::ImageFileReader< TOutputImage, ConvertPixelTraits >:
+ Collaboration diagram for itk::ImageFileReader< TOutputImage, ConvertPixelTraits >:

Public Types

using ImageRegionType = typename TOutputImage::RegionType
 
using IndexType = typename TOutputImage::IndexType
 
using OutputImagePixelType = typename TOutputImage::InternalPixelType
 
using Pointer = SmartPointer< Self >
 
using Self = ImageFileReader
 
using SizeType = typename TOutputImage::SizeType
 
using Superclass = ImageSource< TOutputImage >
 
- Public Types inherited from itk::ImageSource< TOutputImage >
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = Superclass::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType
 
using OutputImagePixelType = typename OutputImageType::PixelType
 
using OutputImagePointer = typename OutputImageType::Pointer
 
using OutputImageRegionType = typename OutputImageType::RegionType
 
using OutputImageType = TOutputImage
 
using Pointer = SmartPointer< Self >
 
using Self = ImageSource
 
using Superclass = ProcessObject
 
- Public Types inherited from itk::ProcessObject
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = DataObject::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArray = std::vector< DataObjectPointer >
 
using DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
 
using MultiThreaderType = MultiThreaderBase
 
using NameArray = std::vector< DataObjectIdentifierType >
 
using Pointer = SmartPointer< Self >
 
using Self = ProcessObject
 
using Superclass = Object
 
- Public Types inherited from itk::Object
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = Object
 
using Superclass = LightObject
 
- Public Types inherited from itk::LightObject
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = LightObject
 

Public Member Functions

virtual const char * GetNameOfClass () const
 
virtual void SetFileNameInput (const SimpleDataObjectDecorator< std::string > *_arg)
 
void SetImageIO (ImageIOBase *imageIO)
 
virtual ImageIOBaseGetModifiableImageIO ()
 
virtual void SetUseStreaming (bool _arg)
 
virtual const bool & GetUseStreaming () const
 
virtual void UseStreamingOn ()
 
- Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageTypeGetOutput (unsigned int idx)
 
OutputImageTypeGetOutput ()
 
const OutputImageTypeGetOutput () const
 
virtual void GraftOutput (DataObject *graft)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *graft)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *graft)
 
ProcessObject::DataObjectPointer MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
 
ProcessObject::DataObjectPointer MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOn ()
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreaderTypeGetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual DataObjectPointerArraySizeType GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual float GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
void IncrementProgress (float increment)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
void SetMultiThreader (MultiThreaderType *threader)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
virtual void SetReleaseDataFlag (bool val)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void SetNumberOfWorkUnits (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfWorkUnits () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
unsigned long AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const
 
LightObject::Pointer CreateAnother () const override
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetReferenceCount (int) override
 
void UnRegister () const noexcept override
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMetaDataDictionary (MetaDataDictionary &&rrhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
Pointer Clone () const
 
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool val)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Protected Member Functions

void DoConvertBuffer (void *inputData, vcl_size_t numberOfPixels)
 
void EnlargeOutputRequestedRegion (DataObject *output) override
 
void GenerateData () override
 
void GenerateOutputInformation () override
 
 ImageFileReader ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
void TestFileExistanceAndReadability ()
 
 ~ImageFileReader () override=default
 
- Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void BeforeThreadedGenerateData ()
 
void ClassicMultiThread (ThreadFunctionType callbackFunction)
 
virtual const ImageRegionSplitterBaseGetImageRegionSplitter () const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
 ~ImageSource () override=default
 
virtual void ThreadedGenerateData (const OutputImageRegionType &region, ThreadIdType threadId)
 
virtual void DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread)
 
virtual bool GetDynamicMultiThreading () const
 
virtual void SetDynamicMultiThreading (bool _arg)
 
virtual void DynamicMultiThreadingOn ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateInputRequestedRegion ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const DataObjectPointerArraySizeTypeGetNumberOfRequiredInputs () const
 
virtual const DataObjectPointerArraySizeTypeGetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
virtual void PopBackInput ()
 
virtual void PopFrontInput ()
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void PushBackInput (const DataObject *input)
 
virtual void PushFrontInput (const DataObject *input)
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &name, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *object)
 
virtual void SetPrimaryOutput (DataObject *object)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyInputInformation () ITKv5_CONST
 
virtual void VerifyPreconditions () ITKv5_CONST
 
 ~ProcessObject () override
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType i)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType i) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
virtual bool GetThreaderUpdateProgress () const
 
virtual void ThreaderUpdateProgressOn ()
 
virtual void SetThreaderUpdateProgress (bool arg)
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &timeStamp)
 
 ~Object () override
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Protected Attributes

ImageIOBase::Pointer m_ImageIO
 
bool m_UserSpecifiedImageIO
 
bool m_UseStreaming
 
- Protected Attributes inherited from itk::ImageSource< TOutputImage >
bool m_DynamicMultiThreading
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
std::atomic< int > m_ReferenceCount
 

Private Attributes

ImageIORegion m_ActualIORegion
 
std::string m_ExceptionMessage
 

Additional Inherited Members

- Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static constexpr unsigned int OutputImageDimension = TOutputImage::ImageDimension
 
- Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBaseGetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION ThreaderCallback (void *arg)
 
- Static Protected Member Functions inherited from itk::ProcessObject
static constexpr float progressFixedToFloat (uint32_t fixed)
 
static uint32_t progressFloatToFixed (float f)
 

Detailed Description

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
class itk::ImageFileReader< TOutputImage, ConvertPixelTraits >

Data source that reads image data from a single file.

This source object is a general filter to read data from a variety of file formats. It works with a ImageIOBase subclass to actually do the reading of the data. Object factory machinery can be used to automatically create the ImageIOBase, or the ImageIOBase can be manually created and set. Note that this class reads data from a single file; if you wish to read data from a series of files use ImageSeriesReader.

TOutputImage is the type expected by the external users of the filter. If data stored in the file is stored in a different format then specified by TOutputImage, than this filter converts data between the file type and the external expected type. The ConvertPixelTraits template parameter is used to do the conversion.

A Pluggable factory pattern is used this allows different kinds of readers to be registered (even at run time) without having to modify the code in this class. Normally just setting the FileName with the appropriate suffix is enough to get the reader to instantiate the correct ImageIO and read the file properly. However, some files (like raw binary format) have no accepted suffix, so you will have to manually create the ImageIO instance of the write type.

See also
ImageSeriesReader
ImageIOBase
ITK Sphinx Examples:
Examples
Examples/DataRepresentation/Image/Image2.cxx, Examples/DataRepresentation/Image/ImageAdaptor1.cxx, Examples/DataRepresentation/Image/ImageAdaptor2.cxx, Examples/DataRepresentation/Image/ImageAdaptor3.cxx, Examples/DataRepresentation/Image/ImageAdaptor4.cxx, Examples/DataRepresentation/Image/RGBImage.cxx, Examples/DataRepresentation/Mesh/ImageToPointSet.cxx, Examples/DataRepresentation/Path/PolyLineParametricPath1.cxx, Examples/Filtering/AntiAliasBinaryImageFilter.cxx, Examples/Filtering/BilateralImageFilter.cxx, Examples/Filtering/BinaryMedianImageFilter.cxx, Examples/Filtering/BinaryMinMaxCurvatureFlowImageFilter.cxx, Examples/Filtering/BinaryThresholdImageFilter.cxx, Examples/Filtering/BinomialBlurImageFilter.cxx, Examples/Filtering/CannyEdgeDetectionImageFilter.cxx, Examples/Filtering/CastingImageFilters.cxx, Examples/Filtering/CompositeFilterExample.cxx, Examples/Filtering/CurvatureAnisotropicDiffusionImageFilter.cxx, Examples/Filtering/CurvatureFlowImageFilter.cxx, Examples/Filtering/DanielssonDistanceMapImageFilter.cxx, Examples/Filtering/DerivativeImageFilter.cxx, Examples/Filtering/DigitallyReconstructedRadiograph1.cxx, Examples/Filtering/DiscreteGaussianImageFilter.cxx, Examples/Filtering/FFTDirectInverse.cxx, Examples/Filtering/FFTDirectInverse2.cxx, Examples/Filtering/FFTImageFilter.cxx, Examples/Filtering/FFTImageFilterFourierDomainFiltering.cxx, Examples/Filtering/FlipImageFilter.cxx, Examples/Filtering/GaussianBlurImageFunction.cxx, Examples/Filtering/GradientAnisotropicDiffusionImageFilter.cxx, Examples/Filtering/GradientMagnitudeImageFilter.cxx, Examples/Filtering/GradientMagnitudeRecursiveGaussianImageFilter.cxx, Examples/Filtering/GradientRecursiveGaussianImageFilter.cxx, Examples/Filtering/GradientVectorFlowImageFilter.cxx, Examples/Filtering/GrayscaleFunctionDilateImageFilter.cxx, Examples/Filtering/LaplacianImageFilter.cxx, Examples/Filtering/LaplacianRecursiveGaussianImageFilter1.cxx, Examples/Filtering/LaplacianRecursiveGaussianImageFilter2.cxx, Examples/Filtering/LaplacianSharpeningImageFilter.cxx, Examples/Filtering/MathematicalMorphologyBinaryFilters.cxx, Examples/Filtering/MathematicalMorphologyGrayscaleFilters.cxx, Examples/Filtering/MeanImageFilter.cxx, Examples/Filtering/MedianImageFilter.cxx, Examples/Filtering/MinMaxCurvatureFlowImageFilter.cxx, Examples/Filtering/MorphologicalImageEnhancement.cxx, Examples/Filtering/OtsuMultipleThresholdImageFilter.cxx, Examples/Filtering/OtsuThresholdImageFilter.cxx, Examples/Filtering/ResampleImageFilter.cxx, Examples/Filtering/ResampleImageFilter2.cxx, Examples/Filtering/ResampleImageFilter3.cxx, Examples/Filtering/ResampleImageFilter4.cxx, Examples/Filtering/ResampleImageFilter5.cxx, Examples/Filtering/ResampleImageFilter6.cxx, Examples/Filtering/ResampleImageFilter7.cxx, Examples/Filtering/ResampleImageFilter8.cxx, Examples/Filtering/ResampleImageFilter9.cxx, Examples/Filtering/ResampleOrientedImageFilter.cxx, Examples/Filtering/ResampleVolumesToBeIsotropic.cxx, Examples/Filtering/RGBCurvatureAnisotropicDiffusionImageFilter.cxx, Examples/Filtering/RGBGradientAnisotropicDiffusionImageFilter.cxx, Examples/Filtering/RGBToGrayscale.cxx, Examples/Filtering/ScaleSpaceGenerator2D.cxx, Examples/Filtering/SecondDerivativeRecursiveGaussianImageFilter.cxx, Examples/Filtering/SigmoidImageFilter.cxx, Examples/Filtering/SignedDanielssonDistanceMapImageFilter.cxx, Examples/Filtering/SmoothingRecursiveGaussianImageFilter.cxx, Examples/Filtering/SmoothingRecursiveGaussianImageFilter2.cxx, Examples/Filtering/SubsampleVolume.cxx, Examples/Filtering/SurfaceExtraction.cxx, Examples/Filtering/ThresholdImageFilter.cxx, Examples/Filtering/VectorCurvatureAnisotropicDiffusionImageFilter.cxx, Examples/Filtering/VectorGradientAnisotropicDiffusionImageFilter.cxx, Examples/Filtering/VectorIndexSelection.cxx, Examples/Filtering/VesselnessMeasureImageFilter.cxx, Examples/Filtering/VotingBinaryHoleFillingImageFilter.cxx, Examples/Filtering/VotingBinaryIterativeHoleFillingImageFilter.cxx, Examples/Filtering/WarpImageFilter1.cxx, Examples/Filtering/ZeroCrossingBasedEdgeDetectionImageFilter.cxx, Examples/IO/ComplexImageReadWrite.cxx, Examples/IO/CovariantVectorImageExtractComponent.cxx, Examples/IO/CovariantVectorImageRead.cxx, Examples/IO/CovariantVectorImageWrite.cxx, Examples/IO/DicomImageReadChangeHeaderWrite.cxx, Examples/IO/DicomImageReadPrintTags.cxx, Examples/IO/DicomImageReadWrite.cxx, Examples/IO/DicomPrintPatientInformation.cxx, Examples/IO/ImageReadCastWrite.cxx, Examples/IO/ImageReadDicomSeriesWrite.cxx, Examples/IO/ImageReadExportVTK.cxx, Examples/IO/ImageReadExtractFilterInsertWrite.cxx, Examples/IO/ImageReadExtractWrite.cxx, Examples/IO/ImageReadImageSeriesWrite.cxx, Examples/IO/ImageReadRegionOfInterestWrite.cxx, Examples/IO/ImageReadWrite.cxx, Examples/IO/IOPlugin.cxx, Examples/IO/RGBImageReadWrite.cxx, Examples/IO/VectorImageReadWrite.cxx, Examples/IO/VisibleHumanPasteWrite.cxx, Examples/Iterators/ImageLinearIteratorWithIndex.cxx, Examples/Iterators/ImageLinearIteratorWithIndex2.cxx, Examples/Iterators/ImageRandomConstIteratorWithIndex.cxx, Examples/Iterators/NeighborhoodIterators1.cxx, Examples/Iterators/NeighborhoodIterators2.cxx, Examples/Iterators/NeighborhoodIterators3.cxx, Examples/Iterators/NeighborhoodIterators4.cxx, Examples/Iterators/NeighborhoodIterators5.cxx, Examples/Iterators/ShapedNeighborhoodIterators1.cxx, Examples/Iterators/ShapedNeighborhoodIterators2.cxx, Examples/RegistrationITKv4/BSplineWarping1.cxx, Examples/RegistrationITKv4/BSplineWarping2.cxx, Examples/RegistrationITKv4/ChangeInformationImageFilter.cxx, Examples/RegistrationITKv4/DeformableRegistration1.cxx, Examples/RegistrationITKv4/DeformableRegistration10.cxx, Examples/RegistrationITKv4/DeformableRegistration11.cxx, Examples/RegistrationITKv4/DeformableRegistration12.cxx, Examples/RegistrationITKv4/DeformableRegistration13.cxx, Examples/RegistrationITKv4/DeformableRegistration14.cxx, Examples/RegistrationITKv4/DeformableRegistration15.cxx, Examples/RegistrationITKv4/DeformableRegistration16.cxx, Examples/RegistrationITKv4/DeformableRegistration17.cxx, Examples/RegistrationITKv4/DeformableRegistration2.cxx, Examples/RegistrationITKv4/DeformableRegistration3.cxx, Examples/RegistrationITKv4/DeformableRegistration4.cxx, Examples/RegistrationITKv4/DeformableRegistration5.cxx, Examples/RegistrationITKv4/DeformableRegistration6.cxx, Examples/RegistrationITKv4/DeformableRegistration7.cxx, Examples/RegistrationITKv4/DeformableRegistration8.cxx, Examples/RegistrationITKv4/DeformableRegistration9.cxx, Examples/RegistrationITKv4/DisplacementFieldInitialization.cxx, Examples/RegistrationITKv4/ImageRegistration1.cxx, Examples/RegistrationITKv4/ImageRegistration10.cxx, Examples/RegistrationITKv4/ImageRegistration11.cxx, Examples/RegistrationITKv4/ImageRegistration12.cxx, Examples/RegistrationITKv4/ImageRegistration13.cxx, Examples/RegistrationITKv4/ImageRegistration14.cxx, Examples/RegistrationITKv4/ImageRegistration15.cxx, Examples/RegistrationITKv4/ImageRegistration16.cxx, Examples/RegistrationITKv4/ImageRegistration17.cxx, Examples/RegistrationITKv4/ImageRegistration18.cxx, Examples/RegistrationITKv4/ImageRegistration19.cxx, Examples/RegistrationITKv4/ImageRegistration2.cxx, Examples/RegistrationITKv4/ImageRegistration20.cxx, Examples/RegistrationITKv4/ImageRegistration3.cxx, Examples/RegistrationITKv4/ImageRegistration4.cxx, Examples/RegistrationITKv4/ImageRegistration5.cxx, Examples/RegistrationITKv4/ImageRegistration6.cxx, Examples/RegistrationITKv4/ImageRegistration7.cxx, Examples/RegistrationITKv4/ImageRegistration8.cxx, Examples/RegistrationITKv4/ImageRegistration9.cxx, Examples/RegistrationITKv4/ImageRegistrationHistogramPlotter.cxx, Examples/RegistrationITKv4/LandmarkWarping2.cxx, Examples/RegistrationITKv4/MeanSquaresImageMetric1.cxx, Examples/RegistrationITKv4/ModelToImageRegistration2.cxx, Examples/RegistrationITKv4/MultiResImageRegistration1.cxx, Examples/RegistrationITKv4/MultiResImageRegistration2.cxx, Examples/RegistrationITKv4/MultiResImageRegistration3.cxx, Examples/RegistrationITKv4/MultiStageImageRegistration1.cxx, Examples/RegistrationITKv4/MultiStageImageRegistration2.cxx, Examples/RegistrationITKv4/ThinPlateSplineWarp.cxx, Examples/Segmentation/CannySegmentationLevelSetImageFilter.cxx, Examples/Segmentation/ConfidenceConnected.cxx, Examples/Segmentation/ConfidenceConnected3D.cxx, Examples/Segmentation/ConnectedThresholdImageFilter.cxx, Examples/Segmentation/CurvesLevelSetImageFilter.cxx, Examples/Segmentation/FastMarchingImageFilter.cxx, Examples/Segmentation/GeodesicActiveContourImageFilter.cxx, Examples/Segmentation/GeodesicActiveContourShapePriorLevelSetImageFilter.cxx, Examples/Segmentation/GibbsPriorImageFilter1.cxx, Examples/Segmentation/HoughTransform2DCirclesImageFilter.cxx, Examples/Segmentation/HoughTransform2DLinesImageFilter.cxx, Examples/Segmentation/IsolatedConnectedImageFilter.cxx, Examples/Segmentation/LaplacianSegmentationLevelSetImageFilter.cxx, Examples/Segmentation/NeighborhoodConnectedImageFilter.cxx, Examples/Segmentation/RelabelComponentImageFilter.cxx, Examples/Segmentation/ShapeDetectionLevelSetFilter.cxx, Examples/Segmentation/ThresholdSegmentationLevelSetImageFilter.cxx, Examples/Segmentation/VectorConfidenceConnected.cxx, Examples/Segmentation/WatershedSegmentation1.cxx, Examples/Segmentation/WatershedSegmentation2.cxx, Examples/SpatialObjects/BoundingBoxFromImageMaskSpatialObject.cxx, Examples/Statistics/BayesianClassifier.cxx, Examples/Statistics/BayesianClassifierInitializer.cxx, Examples/Statistics/ImageEntropy1.cxx, Examples/Statistics/ImageHistogram1.cxx, Examples/Statistics/ImageHistogram2.cxx, Examples/Statistics/ImageHistogram3.cxx, Examples/Statistics/ImageHistogram4.cxx, Examples/Statistics/ImageMutualInformation1.cxx, Examples/Statistics/ScalarImageKmeansClassifier.cxx, Examples/Statistics/ScalarImageKmeansModelEstimator.cxx, Examples/Statistics/ScalarImageMarkovRandomField1.cxx, SphinxExamples/src/Core/Common/StoreNonPixelDataInImage/Code.cxx, SphinxExamples/src/Core/Common/TryCatchException/Code.cxx, SphinxExamples/src/Filtering/ImageGrid/ChangeImageOriginSpacingOrDirection/Code.cxx, SphinxExamples/src/Filtering/ImageGrid/Stack2DImagesInto3DImage/Code.cxx, SphinxExamples/src/ImageCompareCommand.cxx, SphinxExamples/src/IO/ImageBase/ReadAnImage/Code.cxx, SphinxExamples/src/IO/ImageBase/ReadUnknownImageType/Code.cxx, SphinxExamples/src/IO/ImageBase/RegisterIOFactories/Code.cxx, and SphinxExamples/src/Video/BridgeOpenCV/ConvertAnITKGrayScaleImageToCVMat/Code.cxx.

Definition at line 75 of file itkImageFileReader.h.

Member Typedef Documentation

◆ ImageRegionType

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
using itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::ImageRegionType = typename TOutputImage::RegionType

The region of the output image.

Definition at line 98 of file itkImageFileReader.h.

◆ IndexType

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
using itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::IndexType = typename TOutputImage::IndexType

The size of the output image.

Definition at line 95 of file itkImageFileReader.h.

◆ OutputImagePixelType

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
using itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::OutputImagePixelType = typename TOutputImage::InternalPixelType

The pixel type of the output image.

Definition at line 101 of file itkImageFileReader.h.

◆ Pointer

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
using itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::Pointer = SmartPointer<Self>

Definition at line 83 of file itkImageFileReader.h.

◆ Self

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
using itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::Self = ImageFileReader

Standard class type aliases.

Definition at line 81 of file itkImageFileReader.h.

◆ SizeType

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
using itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::SizeType = typename TOutputImage::SizeType

The size of the output image.

Definition at line 92 of file itkImageFileReader.h.

◆ Superclass

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
using itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::Superclass = ImageSource<TOutputImage>

Definition at line 82 of file itkImageFileReader.h.

Constructor & Destructor Documentation

◆ ImageFileReader()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::ImageFileReader ( )
protected

◆ ~ImageFileReader()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::~ImageFileReader ( )
overrideprotecteddefault

Member Function Documentation

◆ DoConvertBuffer()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
void itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::DoConvertBuffer ( void *  inputData,
vcl_size_t  numberOfPixels 
)
protected

Convert a block of pixels from one type to another.

◆ EnlargeOutputRequestedRegion()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
void itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::EnlargeOutputRequestedRegion ( DataObject output)
overrideprotectedvirtual

Give the reader a chance to indicate that it will produce more output than it was requested to produce. ImageFileReader cannot currently read a portion of an image (since the ImageIO objects cannot read a portion of an image), so the ImageFileReader must enlarge the RequestedRegion to the size of the image on disk.

Reimplemented from itk::ProcessObject.

◆ GenerateData()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
void itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::GenerateData ( )
overrideprotectedvirtual

Does the real work.

Reimplemented from itk::ImageSource< TOutputImage >.

◆ GenerateOutputInformation()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
void itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::GenerateOutputInformation ( )
overrideprotectedvirtual

Prepare the allocation of the output image during the first back propagation of the pipeline.

Reimplemented from itk::ProcessObject.

◆ GetModifiableImageIO()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
virtual ImageIOBase* itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::GetModifiableImageIO ( )
virtual

Set/Get the ImageIO helper class. Often this is created via the object factory mechanism that determines whether a particular ImageIO can read a certain file. This method provides a way to get the ImageIO instance that is created. Or you can directly specify the ImageIO to use to read a particular file in case the factory mechanism will not work properly (e.g., unknown or unusual extension).

◆ GetNameOfClass()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
virtual const char* itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageSource< TOutputImage >.

◆ GetUseStreaming()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
virtual const bool& itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::GetUseStreaming ( ) const
virtual

Set the stream On or Off

◆ New()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
static Pointer itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::New ( )
static

Method for creation through the object factory.

Examples
Examples/Filtering/DiffusionTensor3DReconstructionImageFilter.cxx.

Referenced by itk::ReadImage().

◆ PrintSelf()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
void itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageSource< TOutputImage >.

◆ SetFileNameInput()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
virtual void itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::SetFileNameInput ( const SimpleDataObjectDecorator< std::string > *  _arg)
virtual

Specify the file to read. This is forwarded to the IO instance.

◆ SetImageIO()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
void itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::SetImageIO ( ImageIOBase imageIO)

Set/Get the ImageIO helper class. Often this is created via the object factory mechanism that determines whether a particular ImageIO can read a certain file. This method provides a way to get the ImageIO instance that is created. Or you can directly specify the ImageIO to use to read a particular file in case the factory mechanism will not work properly (e.g., unknown or unusual extension).

◆ SetUseStreaming()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
virtual void itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::SetUseStreaming ( bool  _arg)
virtual

Set the stream On or Off

◆ TestFileExistanceAndReadability()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
void itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::TestFileExistanceAndReadability ( )
protected

Test whether the given filename exist and it is readable, this is intended to be called before attempting to use ImageIO classes for actually reading the file. If the file doesn't exist or it is not readable, and exception with an appropriate message will be thrown.

◆ UseStreamingOn()

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
virtual void itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::UseStreamingOn ( )
virtual

Set the stream On or Off

Member Data Documentation

◆ m_ActualIORegion

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
ImageIORegion itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::m_ActualIORegion
private

Definition at line 170 of file itkImageFileReader.h.

◆ m_ExceptionMessage

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
std::string itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::m_ExceptionMessage
private

Definition at line 166 of file itkImageFileReader.h.

◆ m_ImageIO

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
ImageIOBase::Pointer itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::m_ImageIO
protected

Definition at line 158 of file itkImageFileReader.h.

◆ m_UserSpecifiedImageIO

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
bool itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::m_UserSpecifiedImageIO
protected

Definition at line 160 of file itkImageFileReader.h.

◆ m_UseStreaming

template<typename TOutputImage, typename ConvertPixelTraits = DefaultConvertPixelTraits<typename TOutputImage::IOPixelType>>
bool itk::ImageFileReader< TOutputImage, ConvertPixelTraits >::m_UseStreaming
protected

Definition at line 163 of file itkImageFileReader.h.


The documentation for this class was generated from the following file: